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pypi projects 9,932

pypi: LAM
Linear Analysis of Midgut
Papers that mentioned: 46
Very Likely Science (90)
pypi: gdistance
Python package for the gdistance
Papers that mentioned: 46
Very Likely Science (65)
pypi: Mallet
Mallet is a tool for building and maintaining Debian-based virtual servers for web application hosting.
Papers that mentioned: 46
Very Likely Science (65)
pypi: HDDM
HDDM is a python module that implements Hierarchical Bayesian estimation of Drift Diffusion Models.
Papers that mentioned: 46
Very Likely Science (100)
pypi: MAD
Simulation of microservices architectures dynamics
Papers that mentioned: 45
Very Likely Science (90)
pypi: tracer
Centralized sys.settrace management
Papers that mentioned: 45
Very Likely Science (65)
pypi: CR
The official CodeRed Cloud command line tool.
Papers that mentioned: 45
Very Likely Science (100)
pypi: snakemake
Workflow management system to create reproducible and scalable data analyses
Papers that mentioned: 45
Very Likely Science (100)
pypi: zoo
Zoo is a rpc framework for Python
Papers that mentioned: 45
Very Likely Science (65)
pypi: ks
kolmogorov schmirnov test
Papers that mentioned: 45
Very Likely Science (65)
pypi: treeview
Folder Strucutre Visualizer
Papers that mentioned: 45
Very Likely Science (65)
pypi: maestro
Deep Learning experiment orchestration tool
Papers that mentioned: 45
Very Likely Science (75)
pypi: gee
gee (good enough encryption): the simplest possible encryption tool for single files.
Papers that mentioned: 45
Very Likely Science (65)
pypi: graph
Directed and undirected graph data structures and algorithms.
Papers that mentioned: 45
Very Likely Science (90)
pypi: Trace
Python Web Scraping Utility.
Papers that mentioned: 45
Likely Science (40)
pypi: Jigsaw
A plugin framework for Python3.6+
Papers that mentioned: 45
Very Likely Science (85)
pypi: web
Web modules for CGI and WSGI web programming
Papers that mentioned: 44
Very Likely Science (65)
pypi: com
Papers that mentioned: 44
Unlikely Science (0)
pypi: emoji
Emoji for Python
Papers that mentioned: 44
Very Likely Science (100)
pypi: DANE
Utils for working with the Distributed Annotation and Enrichment system
Papers that mentioned: 44
Very Likely Science (100)
pypi: duplo
Makes testing easier
Papers that mentioned: 44
Very Likely Science (65)
pypi: Bayesian
Library and utility module for Bayesian reasoning
Papers that mentioned: 44
Likely Science (50)
pypi: structure
The Structure CLI (Command-Line Tool).
Papers that mentioned: 44
Very Likely Science (90)
pypi: venn
Venn diagrams for 2, 3, 4, 5, 6 sets
Papers that mentioned: 44
Very Likely Science (80)
pypi: Escher
Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Metabolic Pathways
Papers that mentioned: 43
Very Likely Science (90)
pypi: CRISPResso
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from deep sequencing data
Papers that mentioned: 43
Very Likely Science (100)
pypi: h2o
H2O, Fast Scalable Machine Learning, for python
Papers that mentioned: 43
Very Likely Science (100)
pypi: wget
pure python download utility
Papers that mentioned: 43
Likely Science (55)
pypi: CFA
China Futures Assistant 中国期货助手
Papers that mentioned: 43
Very Likely Science (65)
pypi: bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysis
Papers that mentioned: 43
Very Likely Science (100)
pypi: omega
Symbolic algorithms for solving games of infinite duration.
Papers that mentioned: 43
Very Likely Science (95)
pypi: sm
ssh host command manager tool
Papers that mentioned: 42
Very Likely Science (65)
pypi: kit
Flask, Celery, SQLAlchemy integration framework.
Papers that mentioned: 42
Very Likely Science (65)
pypi: arules
multi-purpose association rules analysis
Papers that mentioned: 42
Very Likely Science (75)
pypi: MinimPy
MinimPy is a desktop application program for sequential allocation of subjects to treatment groups in clinical trials by using the method of minimisation.
Papers that mentioned: 42
Very Likely Science (90)
pypi: IsoCor
IsoCor: Isotope Correction for mass spectrometry labeling experiments
Papers that mentioned: 42
Very Likely Science (100)
pypi: Integration
A simple program to perfom integration
Papers that mentioned: 42
Very Likely Science (65)
pypi: chimera
Simple Image Generation
Papers that mentioned: 42
Very Likely Science (90)
pypi: express
Safely process expressions and templates based on user input.
Papers that mentioned: 42
Very Likely Science (90)
pypi: lasso
A simple lasso package
Papers that mentioned: 42
Very Likely Science (65)
pypi: BESST
Scaffolder for genomic assemblies.
Papers that mentioned: 42
Very Likely Science (100)
pypi: Arachne
API for Scrapy spiders
Papers that mentioned: 42
Very Likely Science (65)
pypi: icoshift
icoshift: A versatile tool for the rapid alignment of 1D NMR spectra
Papers that mentioned: 42
Very Likely Science (80)
pypi: MAnorm
A robust model for quantitative comparison of ChIP-Seq data sets
Papers that mentioned: 42
Very Likely Science (80)
pypi: scikit-bio
Data structures, algorithms and educational resources for bioinformatics.
Papers that mentioned: 41
Very Likely Science (90)
pypi: eggnog-mapper
Fast functional annotation of novel sequences using eggNOG orthology assignments.
Papers that mentioned: 41
Very Likely Science (80)
pypi: pdb2pqr
Automates many of the common tasks of preparing structures for continuum solvation calculations as well as many other types of biomolecular structure modeling, analysis, and simulation.
Papers that mentioned: 41
Very Likely Science (90)
pypi: parallel
Elementary parallel programming for Python
Papers that mentioned: 41
Very Likely Science (65)
pypi: Merlot
A web based project management software
Papers that mentioned: 41
Likely Science (40)
pypi: robustbase
A Python Based Library to Calculate Estimators (Sn, Qn, MAD, IQR)
Papers that mentioned: 41
Very Likely Science (65)
pypi: Haskell
Haskell-style currying in python
Papers that mentioned: 41
Very Likely Science (65)
pypi: Solidity
Python interface for the Solidity FDEM code
Papers that mentioned: 41
Very Likely Science (65)
pypi: Ctrax
Ctrax: The Caltech Multiple Fly Tracker
Papers that mentioned: 41
Very Likely Science (80)
pypi: BooleanNet
Boolean Network Simulation Toolbox
Papers that mentioned: 41
Very Likely Science (95)
pypi: lima
Lightweight Marshalling of Python 3 Objects.
Papers that mentioned: 40
Very Likely Science (65)
pypi: weka
A Python wrapper for the Weka data mining library.
Papers that mentioned: 40
Very Likely Science (90)
pypi: weblogo
WebLogo3 : Sequence Logos Redrawn
Papers that mentioned: 40
Very Likely Science (70)
pypi: SIMLR
Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning
Papers that mentioned: 40
Very Likely Science (75)
pypi: ipython
IPython: Productive Interactive Computing
Papers that mentioned: 40
Likely Science (40)
pypi: BitBucket
Papers that mentioned: 40
Very Likely Science (65)
pypi: Hyperion
Monte-Carlo Radiative Transfer Code
Papers that mentioned: 40
Very Likely Science (65)
pypi: Aquarius
Aquarium IoT
Papers that mentioned: 40
Very Likely Science (80)
pypi: cox
Tools for Experiment Logging
Papers that mentioned: 40
Very Likely Science (100)
pypi: rpy2
Python interface to the R language (embedded R)
Papers that mentioned: 40
Very Likely Science (100)
pypi: Matador
Change management for Agresso systems
Papers that mentioned: 39
Very Likely Science (65)
pypi: star
import star
Papers that mentioned: 39
Very Likely Science (90)
pypi: broom
Keep your desktop clutter-free.
Papers that mentioned: 39
Very Likely Science (65)
pypi: it
Modern python code review tool / framework
Papers that mentioned: 39
Very Likely Science (65)
pypi: GenDoc
Generate a Markdown Documentation file from a Python Repository with DocStrings.
Papers that mentioned: 39
Very Likely Science (65)
pypi: Ginkgo
Lightweight service framework
Papers that mentioned: 39
Very Likely Science (65)
pypi: docker
A Python library for the Docker Engine API.
Papers that mentioned: 39
Very Likely Science (100)
pypi: EPANET
EPANET 2.0 calls from python
Papers that mentioned: 39
Very Likely Science (80)
pypi: quast
Genome assembly evaluation tool
Papers that mentioned: 39
Very Likely Science (80)
pypi: q
Quick-and-dirty debugging output for tired programmers
Papers that mentioned: 39
Very Likely Science (65)
pypi: wordcloud
A little word cloud generator
Papers that mentioned: 39
Very Likely Science (100)
pypi: lifelines
Survival analysis in Python, including Kaplan Meier, Nelson Aalen and regression
Papers that mentioned: 39
Very Likely Science (100)
pypi: to
A trainer for PyTorch
Papers that mentioned: 39
Very Likely Science (65)
pypi: Arpeggio
Packrat parser interpreter
Papers that mentioned: 39
Likely Science (55)
pypi: Rest
Rest is a rest client for python that makes it easy to make authenticated rest calls.
Papers that mentioned: 39
Very Likely Science (65)
pypi: jupyter
Jupyter metapackage. Install all the Jupyter components in one go.
Papers that mentioned: 39
Very Likely Science (90)
pypi: elastic
Extension for ASE to calculate elastic constants
Papers that mentioned: 38
Very Likely Science (90)
pypi: patchwork
Deployment/sysadmin operations, powered by Fabric
Papers that mentioned: 38
Very Likely Science (65)
pypi: nilearn
Statistical learning for neuroimaging in Python
Papers that mentioned: 38
Very Likely Science (90)
pypi: CRF
Conditional Random Fields for Vision and Language
Papers that mentioned: 38
Very Likely Science (65)
pypi: spm1d
One-Dimensional Statistical Parametric Mapping
Papers that mentioned: 38
Very Likely Science (100)
pypi: SQLAlchemy
Database Abstraction Library
Papers that mentioned: 38
Very Likely Science (65)
pypi: imbalanced-learn
Toolbox for imbalanced dataset in machine learning.
Papers that mentioned: 38
Very Likely Science (100)
pypi: Snake
Snake is yet another Make-like tool inspired by Rake.
Papers that mentioned: 38
Very Likely Science (65)
pypi: Poly
rapid development of embarrassingly parallelizable applications
Papers that mentioned: 38
Very Likely Science (80)
pypi: RapidSMS
Build SMS applications with Python and Django
Papers that mentioned: 38
Very Likely Science (65)
pypi: LDpred
A Python package that adjusts GWAS summary statistics for the effects of linkage disequilibrium (LD)
Papers that mentioned: 38
Very Likely Science (90)
pypi: application
Papers that mentioned: 37
Very Likely Science (65)
pypi: amap
Automated mouse atlas propagation
Papers that mentioned: 37
Very Likely Science (80)
pypi: neuralnet
A high-level library on top of Theano.
Papers that mentioned: 37
Very Likely Science (85)
pypi: alpha
Alpha platform
Papers that mentioned: 37
Very Likely Science (65)
pypi: o
Get operator information.
Papers that mentioned: 37
Very Likely Science (65)
pypi: demux
Application for demultiplexing sequence data
Papers that mentioned: 37
Very Likely Science (65)
pypi: heatmapper
Python library for creating heatmap
Papers that mentioned: 37
Very Likely Science (65)
pypi: Dovetail
A light-weight, multi-platform, build tool for Python with Continuous Integration servers like Jenkins in mind.
Papers that mentioned: 37
Very Likely Science (65)
pypi: multiqc
Create aggregate bioinformatics analysis reports across many samples and tools
Papers that mentioned: 37
Very Likely Science (90)