pypi: CRISPResso | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0226694

AlleleProfileR: A versatile tool to identify and profile sequence variants in edited genomes
Cited by: 4
Author(s): Arne A.N. Bruyneel, Alexandre R. Colas, Ioannis Karakikes, Mark Mercola
Software Mentions: 9
Published: almost 5 years ago

10.1186/s13059-018-1515-0

All-in-one adeno-associated virus delivery and genome editing by Neisseria meningitidis Cas9 in vivo
Cited by: 85
Author(s): Raed Ibraheim, Chun‐Qing Song, Aamir Mir, Nadia Amrani, Wen Xue, Erik J. Sontheimer
Software Mentions: 4
Published: about 6 years ago

10.1186/s13059-021-02304-3

Prime editing in mice reveals the essentiality of a single base in driving tissue-specific gene expression
Cited by: 54
Author(s): Pan Gao, Qing Lyu, Amr R. Ghanam, Cícera R. Lazzarotto, Gregory A. Newby, Wei Zhang, Mi-Hyun Choi, Orazio J. Slivano, Kevin Holden, John Walker, Anastasia P. Kadina, Rob J. Munroe, Christian Abratte, John C. Schimenti, David R. Liu, Shengdar Q. Tsai, Xiaochun Long, Joseph M. Miano
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.41337

Programmed genome editing of the omega-1 ribonuclease of the blood fluke, Schistosoma mansoni
Cited by: 83
Author(s): Wannaporn Ittiprasert, Victoria H. Mann, Shannon E. Karinshak, Avril Coghlan, Gabriel Rinaldi, Geetha Sankaranarayanan, Apisit Chaidee, Toshihiko Tanno, Chutima Kumkhaek, Pannathee Prangtaworn, Margaret M. Mentink–Kane, Christina J Cochran, Patrick Driguez, Nancy Holroyd, Alan S. Tracey, Rutchannee Rodpai, Bart Everts, Cornelis H. Hokke, Karl F. Hoffmann, Matthew Berriman, Paul J. Brindley
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pgen.1008647

A fly model establishes distinct mechanisms for synthetic CRISPR/Cas9 sex distorters
Cited by: 35
Author(s): Barbara Fasulo, Angela Meccariello, Maya Morgan, Carl Borufka, Philippos Aris Papathanos, Nikolai Windbichler
Software Mentions: 3
Published: over 4 years ago

10.12688/wellcomeopenres.16031.2

Large CRISPR-Cas-induced deletions in the oxamniquine resistance locus of the human parasite Schistosoma mansoni
Cited by: 7
Author(s): Geetha Sankaranarayanan, Avril Coghlan, Patrick Driguez, Magda E. Lotkowska, Mandy Sanders, Nancy Holroyd, Alan S. Tracey, Matthew Berriman, Gabriel Rinaldi
Software Mentions: 3
Published: almost 4 years ago

10.1242/dev.169367

Distal-less activates butterfly eyespots consistent with a reaction diffusion process
Cited by: 53
Author(s): Heidi Connahs, Sham Tlili, Jelle van Creij, Tricia Y. J. Loo, Tirtha Das Banerjee, Timothy E. Saunders, Antónia Monteiro
Software Mentions: 3
Published: almost 6 years ago

10.1016/j.omtm.2021.03.024

CRISPAltRations: A validated cloud-based approach for interrogation of double-strand break repair mediated by CRISPR genome editing
Cited by: 17
Author(s): Gavin Kurgan, Rolf Turk, Heng Li, Nathan James Roberts, Garrett R. Rettig, Ashley M. Jacobi, Lauren Tso, Morgan Sturgeon, Massimo Mertens, Roel Noten, Kurt Florus, Mark A. Behlke, Yu Wang, Matthew McNeill
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pgen.1009321

Regulating the expression of gene drives is key to increasing their invasive potential and the mitigation of resistance
Cited by: 63
Author(s): Andrew Hammond, Xenia Karlsson, Ioanna Morianou, Kyros Kyrou, Andrea Beaghton, Matthew O. Gribble, Nace Kranjc, Roberto Galizi, Austin Burt, Andrea Crisanti, Tony Nolan
Software Mentions: 3
Published: almost 4 years ago

10.18632/oncotarget.25118

Functional significance of co-occurring mutations in PIK3CA and MAP3K1 in breast cancer
Cited by: 36
Author(s): Alvaro Avivar‐Valderas, Robert McEwen, Amir Taheri‐Ghahfarokhi, Larissa S. Carnevalli, Elizabeth Hardaker, Marcello Maresca, Kevin Hudson, Elizabeth A. Harrington, Francisco Cruzalegui
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pgen.1007503

No unexpected CRISPR-Cas9 off-target activity revealed by trio sequencing of gene-edited mice
Cited by: 101
Author(s): Vivek Iyer, Katharina Boroviak, Mark Thomas, Brendan Doe, Laura Riva, Edward Ryder, David J. Adams
Software Mentions: 2
Published: over 6 years ago

10.1089/crispr.2020.0047

One-Step Homology Mediated CRISPR-Cas Editing in Zygotes for Generating Genome Edited Cattle
Cited by: 12
Author(s): Ki‐Eun Park, Juli Foster Frey, Jerel Waters, Sean Simpson, Chris Coutu, Sarah J. Plummer, Matthew Campbell, David M. Donovan, Bhanu P. Telugu
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.celrep.2020.108093

Controlled Cycling and Quiescence Enables Efficient HDR in Engraftment-Enriched Adult Hematopoietic Stem and Progenitor Cells
Cited by: 47
Author(s): Jiyung Shin, Markus Schröder, Francisco Caiado, Stacia K. Wyman, Nicolas Bray, Matteo Bordi, Mark Dewitt, Jonathan T. Vu, Won‐Tae Kim, Dirk Hockemeyer, Markus G. Manz, Jacob E. Corn
Software Mentions: 2
Published: about 4 years ago

10.7150/ijbs.37152

Evaluation of the effects of sequence length and microsatellite instability on single-guide RNA activity and specificity
Cited by: 7
Author(s): Changzhi Zhao, Yunlong Wang, Xiongwei Nie, Xiaosong Han, Hailong Liu, Guanglei Li, Gaojuan Yang, Jinxue Ruan, Yunlong Ma, Xinyun Li, Hui‐Ling Cheng, Shuhong Zhao, Yaping Fang, Shengsong Xie
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.58461

Manipulation of the human tRNA pool reveals distinct tRNA sets that act in cellular proliferation or cell cycle arrest
Cited by: 17
Author(s): Noa Aharon-Hefetz, Idan Frumkin, Yoav Mayshar, Orna Dahan, Yitzhak Pilpel, Roni Rak
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pbio.3000747

High-fidelity SaCas9 identified by directional screening in human cells
Cited by: 35
Author(s): Haihua Xie, Xianglian Ge, Fayu Yang, Bang Wang, Shuang Li, Jinzhi Duan, Xiujuan Lv, Congsheng Cheng, Zongming Song, Changbao Liu, Junzhao Zhao, Yu Zhang, Jinyu Wu, Caixia Gao, Jinwei Zhang, Feng Gu
Software Mentions: 2
Published: over 4 years ago

10.1016/j.ajhg.2021.01.006

Allele-specific editing ameliorates dominant retinitis pigmentosa in a transgenic mouse model
Cited by: 31
Author(s): Clarissa Patrizi, Manel Llado, Daniela Benati, Carolina Iodice, Elena Marrocco, Rosellina Guarascio, Enrico Maria Surace, Michael E. Cheetham, Alberto Auricchio, Alessandra Recchia
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpls.2017.01441

Efficient CRISPR/Cas9-Mediated Genome Editing Using a Chimeric Single-Guide RNA Molecule
Cited by: 95
Author(s): Haroon Butt, Ayman Eid, Zahir Ali, Mohamed A. M. Atia, Morad M. Mokhtar, Norhan Hassan, Ciaran M. Lee, Gang Bao, Magdy M. Mahfouz
Software Mentions: 1
Published: about 7 years ago

10.1038/srep42127

Method for Dual Viral Vector Mediated CRISPR-Cas9 Gene Disruption in Primary Human Endothelial Cells
Cited by: 22
Author(s): Hui Gong, Meilin Liu, Jeff Klomp, Bradley J. Merrill, Jalees Rehman, Asrar B. Malik
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-07642-6

ssAAVs containing cassettes encoding SaCas9 and guides targeting hepatitis B virus inactivate replication of the virus in cultured cells
Cited by: 46
Author(s): Tristan Scott, Buhle Moyo, Samantha Nicholson, Mohube Betty Maepa, Koichi Watashi, Abdullah Ely, Marc S. Weinberg, Patrick Arbuthnot
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-39616-1

Probing the Behaviour of Cas1-Cas2 upon Protospacer Binding in CRISPR-Cas Systems using Molecular Dynamics Simulations
Cited by: 9
Author(s): Hua‐Ping Wan, Jianming Li, Shan Chang, Shiming Lin, Yuanxin Tian, Xin Tian, Meihua Wang, Jianping Hu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-40896-w

CRIS.py: A Versatile and High-throughput Analysis Program for CRISPR-based Genome Editing
Cited by: 96
Author(s): Jon P. Connelly, Shondra M. Pruett-Miller
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-55463-6

A qPCR method for genome editing efficiency determination and single-cell clone screening in human cells
Cited by: 21
Author(s): Bo Li, Naixia Ren, Lele Yang, Junhao Liu, Qilai Huang
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-69421-0

Physiological impact and comparison of mutant screening methods in piwil2 KO founder Nile tilapia produced by CRISPR/Cas9 system
Cited by: 11
Author(s): Ye Jin, Baoshan Liao, Hervé Migaud, Andrew Davie
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-90649-x

Disruption of the odorant coreceptor Orco impairs foraging and host finding behaviors in the New World screwworm fly
Cited by: 5
Author(s): Daniel F. Paulo, Ana Carolina M. Junqueira, Alex P. Arp, André Schwambach Vieira, Jorge Ceballos, S. Skoda, Adalberto A. Pérez-de-León, Agustin Sagel, W. Owen McMillan, Maxwell J. Scott, Carolina Concha, Ana Maria Lima de Azeredo-Espin
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.41463

Programmed knockout mutation of liver fluke granulin attenuates virulence of infection-induced hepatobiliary morbidity
Cited by: 59
Author(s): Patpicha Arunsan, Wannaporn Ittiprasert, Michael J. Smout, Christina J Cochran, Victoria H. Mann, Sujittra Chaiyadet, Shannon E. Karinshak, Banchob Sripa, Neil D. Young, Javier Sotillo, Alex Loukas, Paul J. Brindley, Thewarach Laha
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms22073718

Loss of the Metastasis Suppressor NME1, But Not of Its Highly Related Isoform NME2, Induces a Hybrid Epithelial–Mesenchymal State in Cancer Cells
Cited by: 5
Author(s): Anda Huna, Béatrice Nawrocki‐Raby, Teresita Padilla‐Benavides, Julie Gavard, Sylvie Coscoy, David Bernard, Mathieu Boissan
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2021.738746

FnCas12a/crRNA-Mediated Genome Editing in Eimeria tenella
Cited by: 4
Author(s): Peipei Cheng, Zhihao Zhang, Fayu Yang, Shuo Cai, Lina Wang, Chunmei Wang, Mi Wang, Yingchun Liu, Chenzhong Fei, Lifang Zhang, Feiqun Xue, Feng Gu
Software Mentions: 1
Published: about 3 years ago

10.1186/s12896-020-00638-7

Efficient generation of GGTA1-deficient pigs by electroporation of the CRISPR/Cas9 system into in vitro-fertilized zygotes
Cited by: 26
Author(s): Fuminori Tanihara, Maki Hirata, Nhien Thi Nguyen, Osamu Sawamoto, Takeshi Kikuchi, Masako Doi, Takeshige Otoi
Software Mentions: 1
Published: about 4 years ago

10.1186/s12896-019-0565-z

gRNA validation for wheat genome editing with the CRISPR-Cas9 system
Cited by: 48
Author(s): Taj Arndell, Niharika Sharma, Peter Langridge, Ute Baumann, Nathan S. Watson-Haigh, Ryan Whitford
Software Mentions: 1
Published: about 5 years ago

10.1186/s12896-020-00650-x

Enhancement of CRISPR-Cas9 induced precise gene editing by targeting histone H2A-K15 ubiquitination
Cited by: 7
Author(s): Sanum Bashir, Tu Dang, Jana Rossius, J. Wolf, Ralf Kühn
Software Mentions: 1
Published: about 4 years ago

10.1186/s12864-016-2877-x

Forward genetic screen of human transposase genomic rearrangements
Cited by: 11
Author(s): Anton Henssen, Eileen Jiang, Jiali Zhuang, Luca Pinello, Nicholas D. Socci, Richard P. Koche, Mithat Gönen, Camila M. Villasante, Scott A. Armstrong, Daniel E. Bauer, Zhiping Weng, Alex Kentsis
Software Mentions: 1
Published: over 8 years ago

10.1089/crispr.2020.0043

Novel Type V-A CRISPR Effectors Are Active Nucleases with Expanded Targeting Capabilities
Cited by: 6
Author(s): Daniela S. Aliaga Goltsman, Lisa Alexander, Audra E. Devoto, Justine B. Albers, Jason Liu, Cristina N. Butterfield, Christopher T. Brown, Brian C. Thomas
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.ymeth.2017.03.021

Simplified CRISPR tools for efficient genome editing and streamlined protocols for their delivery into mammalian cells and mouse zygotes
Cited by: 117
Author(s): Ashley M. Jacobi, Garrett R. Rettig, Rolf Turk, Michael A. Collingwood, Sarah A. Zeiner, Rolen M. Quadros, Donald W. Harms, Paul J. Bonthuis, Christopher Gregg, Masato Ohtsuka, Channabasavaiah B. Gurumurthy, Mark A. Behlke
Software Mentions: 1
Published: over 7 years ago

10.1016/j.omtn.2019.12.026

A Small Molecule-Controlled Cas9 Repressible System
Cited by: 21
Author(s): Youjun Wu, Lu Yang, Tzu-Ming Chang, Fouad Kandeel, Jiing‐Kuan Yee
Software Mentions: 1
Published: over 4 years ago

10.1080/20477724.2020.1803628

Cellular mechanisms regulating synthetic sex ratio distortion in the Anopheles gambiae germline
Cited by: 8
Author(s): Roya Elaine Haghighat-Khah, Atashi Sharma, Mariana Wunderlich, Giulia Morselli, Louise Anna Marston, Christopher Bamikole, Ann Hall, Nace Kranjc, Chrysanthi Taxiarchi, Igor V. Sharakhov, Roberto Galizi
Software Mentions: 1
Published: about 4 years ago

10.1111/pbi.13253

Reduced fire blight susceptibility in apple cultivars using a high‐efficiency CRISPR/Cas9‐FLP/FRT‐based gene editing system
Cited by: 78
Author(s): Valerio Pompili, Lorenza Dalla Costa, Stefano Piazza, Massimo Pindo, Mickaël Malnoy
Software Mentions: 1
Published: about 5 years ago

10.1111/pbi.13106

<scp>CRISPR</scp>/Cas9‐mediated knockout of Ms1 enables the rapid generation of male‐sterile hexaploid wheat lines for use in hybrid seed production
Cited by: 105
Author(s): Anzu Okada, Taj Arndell, Nikolai Borisjuk, Niharika Sharma, Nathan S. Watson‐Haigh, Elise J. Tucker, Ute Baumann, Peter Langridge, Ryan Whitford
Software Mentions: 1
Published: over 5 years ago

10.1111/pbi.12938

Genotyping genome-edited mutations in plants using CRISPR ribonucleoprotein complexes
Cited by: 54
Author(s): Zhen Liang, Kunling Chen, Yan Yan, Yi Zhang, Caixia Gao
Software Mentions: 1
Published: over 6 years ago

10.3390/plants10010062

Targeted Mutagenesis of the Female-Suppressor SyGI Gene in Tetraploid Kiwifruit by CRISPR/CAS9
Cited by: 6
Author(s): Gloria De Mori, Giusi Zaina, Bárbara Franco-Orozco, R. Testolin, Emanuele De Paoli, G. Cipriáni
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pbio.2005840

In vitro–transcribed guide RNAs trigger an innate immune response via the RIG-I pathway
Cited by: 77
Author(s): Beeke Wienert, Jiyung Shin, Elena Zelin, Kathleen Pestal, Jacob E. Corn
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0234146

Loss of STAT6 leads to anchorage-independent growth and trastuzumab resistance in HER2+ breast cancer cells
Cited by: 5
Author(s): Molly DiScala, Matthew S. Najor, Timothy Yung, Deri Morgan, Abde M. Abukhdeir, Melody A. Cobleigh
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0191503

Acute multi-sgRNA knockdown of KEOPS complex genes reproduces the microcephaly phenotype of the stable knockout zebrafish model
Cited by: 17
Author(s): Tilman Jobst-Schwan, Johanna Magdalena Schmidt, Ronen Schneider, Charlotte A. Hoogstraten, Jeremy F.P. Ullmann, David Schapiro, Amar J. Majmundar, Amy Kolb, Kaitlyn Eddy, Shirlee Shril, Daniela A. Braun, Annapurna Poduri
Software Mentions: 1
Published: almost 7 years ago

Projects: pypi: CRISPResso

Papers Mentioning CRISPResso 43