Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-021-02304-3

https://doi.org/10.1186/s13059-021-02304-3

Prime editing in mice reveals the essentiality of a single base in driving tissue-specific gene expression

Cited by: 54
Author(s): Pan Gao, Qing Lyu, Amr R. Ghanam, Cícera R. Lazzarotto, Gregory A. Newby, Wei Zhang, Mi-Hyun Choi, Orazio J. Slivano, Kevin Holden, John Walker, Anastasia P. Kadina, Rob J. Munroe, Christian Abratte, John C. Schimenti, David R. Liu, Shengdar Q. Tsai, Xiaochun Long, Joseph M. Miano
Published: over 3 years ago

Software Mentions 4

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: CRISPResso
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from deep sequencing data
Papers that mentioned: 43
pypi: scikit-bio
Data structures, algorithms and educational resources for bioinformatics.
Papers that mentioned: 41