pypi: lifelines | Projects | Ecosyste.ms: Papers

10.1038/s41396-020-00814-9

Food or just a free ride? A meta-analysis reveals the global diversity of the Plastisphere
Cited by: 96
Author(s): Robyn J. Wright, Morgan G. I. Langille, Tony R. Walker
Software Mentions: 23
Published: almost 4 years ago

10.1016/j.dnarep.2021.103158

Damage-Net: A program for DNA repair meta-analysis identifies a network of novel repair genes that facilitate cancer evolution
Cited by: 1
Author(s): Aldo S. Bader, Martin Bushell
Software Mentions: 10
Published: about 3 years ago

10.1093/jamia/ocab068

Stroke risk prediction using machine learning: a prospective cohort study of 0.5 million Chinese adults
Cited by: 26
Author(s): Matthew Chun, Robert Clarke, Benjamin J. Cairns, David A. Clifton, Derrick Bennett, Yiping Chen, Yu Guo, Pei Pei, Jun Lv, Canqing Yu, Ling Yang, Liming Li, Zhengming Chen, Tingting Zhu
Software Mentions: 9
Published: over 3 years ago

10.1186/s13073-020-00786-7

A cell-of-origin epigenetic tracer reveals clinically distinct subtypes of high-grade serous ovarian cancer
Cited by: 11
Author(s): Pietro Lo Riso, Carlo Emanuele Villa, Gilles Gasparoni, Andrea Vingiani, Raffaele Luongo, Anna Manfredi, Annemarie Jungmann, Alessia Bertolotti, Francesca Borgo, Annalisa Garbi, Michela Lupia, Pasquale Laise, Vivek Das, Giancarlo Pruneri, Giuseppe Viale, Nicoletta Colombo, Teresa Manzo, Luigi Nezi, Ugo Cavallaro, Davide Cacchiarelli, Jörn Walter, Giuseppe Testa
Software Mentions: 9
Published: almost 4 years ago

10.3390/cancers12123799

A Topic Modeling Analysis of TCGA Breast and Lung Cancer Transcriptomic Data
Cited by: 11
Author(s): Filippo Valle, Matteo Osella, Michele Caselle
Software Mentions: 8
Published: almost 4 years ago

10.1016/j.ebiom.2021.103390

AI-guided discovery of the invariant host response to viral pandemics
Cited by: 31
Author(s): Debashis Sahoo, Gajanan D. Katkar, Soni Khandelwal, Mahdi Behroozikhah, Amanraj Claire, Vanessa Castillo, Courtney Tindle, MacKenzie Fuller, Sahar Taheri, Thomas F. Rogers, Nathan Beutler, Sydney I. Ramirez, Stephen A. Rawlings, Victor Pretorius, Davey M Smith, Dennis R. Burton, Laura E. Crotty Alexander, Jason Duran, Shane Crotty, Jennifer M. Dan, Soumita Das, Pradipta Ghosh
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-021-92799-4

Long-term cancer survival prediction using multimodal deep learning
Cited by: 60
Author(s): Luís A. Vale-Silva, Karl Rohr
Software Mentions: 7
Published: about 3 years ago

10.1016/j.cell.2020.07.017

Therapy-Induced Evolution of Human Lung Cancer Revealed by Single-Cell RNA Sequencing
Cited by: 319
Author(s): Ashley Maynard, Caroline E. McCoach, Julia Rotow, Lincoln Harris, Franziska Haderk, D. Lucas Kerr, Elizabeth A. Yu, Erin L. Schenk, Weilun Tan, Alexander Zee, Michelle Tan, Philippe Gui, Tasha Lea, Wei Wu, Anatoly Urisman, Kirk D. Jones, Rene Sit, Pallav K. Kolli, E. Scott Seeley, Yaron Gesthalter, Daniel Le, Kevin A. Yamauchi, David M. Naeger, Sourav Bandyopadhyay, Khyati N. Shah, Lauren Cech, Norman Thomas, Anshal Gupta, Mayra A. Gonzalez, Hien Do, Lisa Tan, Bianca Bacaltos, Rafael Gómez-Sjöberg, Matthew A. Gubens, Thierry Jahan, Johannes R. Kratz, David M. Jablons, Norma Neff, Robert C. Doebele, Jonathan S. Weissman, Collin M. Blakely, Spyros Darmanis, Trever G. Bivona
Software Mentions: 7
Published: about 4 years ago

10.1126/scitranslmed.abi9915

Antibodies elicited by mRNA-1273 vaccination bind more broadly to the receptor binding domain than do those from SARS-CoV-2 infection
Cited by: 176
Author(s): Allison J Greaney, Andrea N Loes, Lauren E. Gentles, Katharine H.D. Crawford, Tyler N Starr, Keara D. Malone, Helen Y. Chu, Jesse D. Bloom
Software Mentions: 6
Published: about 3 years ago

10.1186/s12874-019-0673-4

Comparison of methods for early-readmission prediction in a high-dimensional heterogeneous covariates and time-to-event outcome framework
Cited by: 7
Author(s): Simon Bussy, Raphaël Veil, Vincent Looten, Anita Burgun, Stéphane Gaı̈ffas, Agathe Guilloux, Brigitte Ranque, Anne‐Sophie Jannot
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0235758

Development and validation of risk prediction models for multiple cardiovascular diseases and Type 2 diabetes
Cited by: 16
Author(s): Mehrdad Rezaee, Igor Putrenko, Arsia Takeh, Andrea Ganna, Erik Ingelsson
Software Mentions: 5
Published: about 4 years ago

10.3390/cancers13184671

Identifying New Potential Biomarkers in Adrenocortical Tumors Based on mRNA Expression Data Using Machine Learning
Cited by: 9
Author(s): André Marquardt, Laura‐Sophie Landwehr, Cristina L. Ronchi, Guido Di Dalmazi, Anna Riester, Philip Kollmannsberger, Barbara Altieri, Martin Fassnacht, Silviu Sbiera
Software Mentions: 5
Published: about 3 years ago

10.1186/s12967-020-02319-7

A LASSO-derived risk model for long-term mortality in Chinese patients with acute coronary syndrome
Cited by: 18
Author(s): Yiming Li, Zhuo-lun Li, Fei Chen, Qi Liu, Yong Peng, Mao Chen
Software Mentions: 4
Published: over 4 years ago

10.1002/1878-0261.12895

Benchmarking HLA genotyping and clarifying HLA impact on survival in tumor immunotherapy
Cited by: 15
Author(s): Xiangyong Li, Chi Zhou, Ke Chen, Bingding Huang, Qi Liu, Yue Hao
Software Mentions: 4
Published: over 3 years ago

10.3389/fonc.2021.621993

Ultrasound-Based Radiomics Analysis for Predicting Disease-Free Survival of Invasive Breast Cancer
Cited by: 21
Author(s): Lang Xiong, Haolin Chen, Xiaofeng Tang, Biyun Chen, Xinhua Jiang, Lizhi Liu, Yanqiu Feng, Longzhong Liu, Li Li
Software Mentions: 4
Published: over 3 years ago

10.1038/srep36493

Big genomics and clinical data analytics strategies for precision cancer prognosis
Cited by: 18
Author(s): Ghim Siong Ow, Vladimir A. Kuznetsov
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-019-41595-2

Automated tumour budding quantification by machine learning augments TNM staging in muscle-invasive bladder cancer prognosis
Cited by: 31
Author(s): Nicolas Brieu, Christos G. Gavriel, Ines P. Nearchou, David J. Harrison, Günter Schmidt, Peter D. Caie
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-84003-4

Combined unsupervised-supervised machine learning for phenotyping complex diseases with its application to obstructive sleep apnea
Cited by: 12
Author(s): Eun Yeol, Jeong Whun Kim, Young-Min Lee, Sung Woo Cho, Heeyoung Kim, Jae Kyoung Kim
Software Mentions: 4
Published: over 3 years ago

10.15252/msb.20188754

Inaccuracy of the log‐rank approximation in cancer data analysis
Cited by: 12
Author(s): Nimrod Rappoport, Ron Shamir
Software Mentions: 3
Published: about 5 years ago

10.7150/thno.37429

Association of MRI-derived radiomic biomarker with disease-free survival in patients with early-stage cervical cancer
Cited by: 50
Author(s): Fang Jin, Bin Zhang, Shuo Wang, Yan Jin, Fei Wang, Yingying Ding, Justin Chen, Liting Chen, Yueyue Li, Minmin Li, Zhuozhi Chen, Lizhi Liu, Zhenyu Liu, Jie Tian, Shuixing Zhang
Software Mentions: 3
Published: over 4 years ago

10.1007/s00280-019-03797-3

A novel method to address the association between received dose intensity and survival outcome: benefits of approaching treatment intensification at a more individualised level in a trial of the European Osteosarcoma Intergroup
Cited by: 18
Author(s): Carlo Lancia, Jakob Anninga, Matthew R. Sydes, Cristian Spitoni, Jeremy S Whelan, Pancras C.W. Hogendoorn, Hans Gelderblom, Marta Fiocco
Software Mentions: 3
Published: over 5 years ago

10.1186/s12885-020-06906-1

Stereotactic robotic body radiotherapy for patients with oligorecurrent pulmonary metastases
Cited by: 12
Author(s): P. Berkovic, Ákos Gulybán, Gilles Defraene, Laurie Swenen, D. Dechambre, Paul Viet Nguyen, Nicolas Jansen, C. Mievis, Pierre Lovinfosse, L. Jánváry, Maarten Lambrecht, Gert De Meerleer
Software Mentions: 3
Published: over 4 years ago

10.1186/s13073-021-00935-6

Distinct signatures of codon and codon pair usage in 32 primary tumor types in the novel database CancerCoCoPUTs for cancer-specific codon usage
Cited by: 4
Author(s): Douglas Meyer, Jacob Kames, Haim Bar, Anton A. Komar, Aikaterini Alexaki, Juan C. Ibla, Ryan Hunt, Luis V. Santana‐Quintero, Anton Golikov, Michael DiCuccio, Chava Kimchi-Sarfaty
Software Mentions: 3
Published: about 3 years ago

10.1186/s13062-019-0249-6

A novel framework for horizontal and vertical data integration in cancer studies with application to survival time prediction models
Cited by: 33
Author(s): Iliyan Mihaylov, Maciej M. Kańduła, Milko Krachunov, Dimitar Vassilev
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmed.2020.601602

Toward Machine-Learning-Based Decision Support in Diabetes Care: A Risk Stratification Study on Diabetic Foot Ulcer and Amputation
Cited by: 18
Author(s): Zeinab Schäfer, Andreas Mathisen, Kristina Bacher Svendsen, Susanne Engberg, Trine Rolighed Thomsen, Klaus Kirketerp‐Møller
Software Mentions: 2
Published: over 3 years ago

10.1002/1878-0261.12891

Molecular profiling of long‐term responders to immune checkpoint inhibitors in advanced non‐small cell lung cancer
Cited by: 20
Author(s): Joan Frigola, Alejandro Navarro, Caterina Carbonell, Ana Callejo, Patricia Izquierdo Iranzo, S. Cedrés, Alex Martínez-Martí, Núria Pardo, Nadia Saoudi-Gonzalez, Débora Martínez, José Jimenez, Irene Sansano, Francesco Mancuso, Paolo Nuciforo, Luis M. Montuenga, Montse Sánchez‐Céspedes, Aleix Prat, Ana Vivancos, Enriqueta Felip, Ramon Amat
Software Mentions: 2
Published: over 3 years ago

10.3390/life11080730

Increased Pace of Aging in COVID-Related Mortality
Cited by: 10
Author(s): Fedor Galkin, Austin J Parish, Evelyne Bischof, Junyi Zhang, Polina Mamoshina, Alex Zhavoronkov
Software Mentions: 2
Published: about 3 years ago

10.3390/jcm9051250

Multiparametric Modelling of Survival in Pancreatic Ductal Adenocarcinoma Using Clinical, Histomorphological, Genetic and Image-Derived Parameters
Cited by: 12
Author(s): Georgios Kaissis, Friederike Jungmann, Sebastian Ziegelmayer, Fabian Lohöfer, F Harder, Anna Melissa Schlitter, Alexander Muckenhuber, Katja Steiger, Rebekka Schirren, Helmut Frieß, Roland M. Schmid, Wilko Weichert, Marcus R. Makowski, Rickmer Braren
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-60480-x

High WBP5 expression correlates with elevation of HOX genes levels and is associated with inferior survival in patients with acute myeloid leukaemia
Cited by: 8
Author(s): Carl Ward, Pierre Cauchy, Paloma García, Jonathan Frampton, Miguel A. Esteban, Giacomo Volpe
Software Mentions: 2
Published: over 4 years ago

10.18632/aging.203447

Association between housing type and accelerated biological aging in different sexes: moderating effects of health behaviors
Cited by: 2
Author(s): Ted Kheng Siang Ng, David B. Matchar, Timothy V. Pyrkov, П. О. Федичев, Angelique Chan, Brian K. Kennedy
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pcbi.1008777

Assessing the contribution of tumor mutational phenotypes to cancer progression risk
Cited by: 1
Author(s): Yifeng Tao, Ashok Rajaraman, Xiaoyue Cui, Ziyi Cui, Haoran Chen, Yuanqi Zhao, Jesse Eaton, Hannah Kim, Jian Ma, Russell Schwartz
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-84137-5

Oncologic immunomodulatory agents in patients with cancer and COVID-19
Cited by: 11
Author(s): Justin Jee, Aaron J. Stonestrom, Sean M. Devlin, Teresa Nguyentran, Beatriz Wills, Varun Narendra, Michael B. Foote, Melissa Lumish, Santosha A. Vardhana, Stephen M. Pastores, Neha Korde, Dhwani Patel, Steven M. Horwitz, Michael Scordo, Anthony F. Daniyan
Software Mentions: 1
Published: over 3 years ago

10.3390/jcm10194567

To Close, Observe, or Reconstruct: The Third Way of Managing Dialysis Fistula Aneurysms in Kidney Transplant Recipients
Cited by: 2
Author(s): Krzysztof Bojakowski, Aneta I. Gziut, Rafał Góra, Bartosz Foroncewicz, Stanisław Kaźmierczak, Dominika Kasprzak, Jolanta Małyszko, Piotr Andziak
Software Mentions: 1
Published: almost 3 years ago

10.1093/gigascience/giaa128

Trajectories, bifurcations, and pseudo-time in large clinical datasets: applications to myocardial infarction and diabetes data
Cited by: 19
Author(s): С. Е. Головенкин, Jonathan Bac, Alexander Chervov, Evgeny M. Mirkes, Yu. V. Orlova, Emmanuel Barillot, Alexander N. Gorban, Andreï Zinovyev
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0248580

On the analysis of mortality risk factors for hospitalized COVID-19 patients: A data-driven study using the major Brazilian database
Cited by: 63
Author(s): Fernanda Sumika Hojo de Souza, Natália Satchiko Hojo-Souza, Ben Dêivide de Oliveira Batista, Cristiano M. Silva, Daniel L. Guidoni
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.47362

Systematic identification of cancer cell vulnerabilities to natural killer cell-mediated immune surveillance
Cited by: 54
Author(s): Matthew F. Pech, Linda Fong, Jacqueline E. Villalta, Leanne Jg Chan, Samir Kharbanda, Jonathon O’Brien, Fiona E. McAllister, Ari J. Firestone, Calvin H. Jan, Jeffrey Settleman
Software Mentions: 1
Published: about 5 years ago

10.7759/cureus.7061

Tumor Location and Treatment Modality are Associated with Overall Survival in Adult Medulloblastoma
Cited by: 1
Author(s): K Anthony, Isaac G. Freedman, Jun Hui Lee, Danielle F Miyagishima, Osama Ahmed, Jacky T. Yeung
Software Mentions: 1
Published: over 4 years ago

10.3390/genes12091458

Metatranscriptomic Analysis of Human Lung Metagenomes from Patients with Lung Cancer
Cited by: 17
Author(s): Ya‐Sian Chang, Meng‐Hsiang Hsu, Siang-Jyun Tu, Jiin Cherng Yen, Ya-Ting Lee, Hsin‐Yuan Fang, Jan-Gowth Chang
Software Mentions: 1
Published: almost 3 years ago

Projects: pypi: lifelines

Papers Mentioning lifelines 39