pypi: icoshift | Projects | Ecosyste.ms: Papers

10.1007/s11306-017-1242-7

Navigating freely-available software tools for metabolomics analysis
Cited by: 165
Author(s): Rachel Spicer, Reza M. Salek, Pablo Moreno-Ger, Daniel Cañueto, Christoph Steinbeck
Software Mentions: 8
Published: about 7 years ago

10.1186/s12859-014-0396-9

Pathomx: an interactive workflow-based tool for the analysis of metabolomic data
Cited by: 22
Author(s): Martin Fitzpatrick, Catherine McGrath, Stephen P. Young
Software Mentions: 6
Published: almost 10 years ago

10.1002/ece3.7265

Integrating omics to characterize eco‐physiological adaptations: How moose diet and metabolism differ across biogeographic zones
Cited by: 3
Author(s): Christian Fohringer, Ilona Dudka, Robert L. Spitzer, Fredrik Stenbacka, Olena Rzhepishevska, Joris P. G. M. Cromsigt, Gerhard Gröbner, Göran Ericsson, Navinder J. Singh
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pcbi.1006018

speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification
Cited by: 40
Author(s): Charlie Beirnaert, Pieter Meysman, Trung Nghia Vu, Nina Hermans, Sandra Apers, Luc Pieters, Adrian Covaci, Kris Laukens
Software Mentions: 3
Published: over 6 years ago

10.3390/nu12113225

Prebiotic Xylo-Oligosaccharides Ameliorate High-Fat-Diet-Induced Hepatic Steatosis in Rats
Cited by: 24
Author(s): Sanna Lensu, Raghunath Pariyani, Elina Mäkinen, Baoru Yang, Wisam Saleem, Eveliina Munukka, Maarit Lehti, Anastasiia Driuchina, Jere Lindén, Marja Tiirola, Leo Lahti, Satu Pekkala
Software Mentions: 2
Published: about 4 years ago

10.1242/bio.029991

Amyloid β42 peptide is toxic to non-neural cells in<i>Drosophila</i>yielding a characteristic metabolite profile and the effect can be suppressed by PI3K
Cited by: 5
Author(s): Mercedes Arnés, Sergio Casas‐Tintó, Anders Malmendal, Alberto Ferrús
Software Mentions: 2
Published: almost 7 years ago

10.3390/metabo3020259

Getting Your Peaks in Line: A Review of Alignment Methods for NMR Spectral Data
Cited by: 93
Author(s): Trung Nghia Vu, Kris Laukens
Software Mentions: 2
Published: over 11 years ago

10.3390/metabo10020057

Background Diet Influences TMAO Concentrations Associated with Red Meat Intake without Influencing Apparent Hepatic TMAO-Related Activity in a Porcine Model
Cited by: 18
Author(s): Rebekka Thøgersen, Martin Rasmussen, Ulrik Kræmer Sundekilde, Sophie Goethals, Thomas Van Hecke, Els Vossen, Stefaan De Smet, Hanne Christine Bertram
Software Mentions: 2
Published: over 4 years ago

10.3390/microorganisms9051003

Administration of Bovine Milk Oligosaccharide to Weaning Gnotobiotic Mice Inoculated with a Simplified Infant Type Microbiota
Cited by: 0
Author(s): Louise Margrethe Arildsen Jakobsen, Ulrik Kræmer Sundekilde, Henrik J. Andersen, Witold Kot, Josué L. Castro‐Mejía, Dennis Sandris Nielsen, Axel Kornerup Hansen, Hanne Christine Bertram
Software Mentions: 2
Published: over 3 years ago

10.3390/pathogens9050399

LC-QTOF-MS and 1H NMR Metabolomics Verifies Potential Use of Greater Omentum for Klebsiella pneumoniae Biofilm Eradication in Rats
Cited by: 3
Author(s): Joanna Teul, Stanisław Deja, Katarzyna Celińska-Janowicz, Adam Ząbek, Piotr Młynarz, Piotr Barć, Adam Junka, Danuta Smutnicka, Marzenna Bartoszewicz, Jerzy Pałka, Wojciech Miltyk
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0047461

The Metabolic Profile of Long-Lived Drosophila melanogaster
Cited by: 38
Author(s): Pernille Sarup, Simon Metz Mariendal Pedersen, Niels Chr. Nielsen, Anders Malmendal, Volker Loeschcke
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0091923

Metabolomic Biomarkers in Serum and Urine in Women with Preeclampsia
Cited by: 51
Author(s): Marie Austdal, Ragnhild Bergene Skråstad, Astrid Gundersen, Rigmor Austgulen, Ann‐Charlotte Iversen, Tone Frost Bathen
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0062375

Spermine and Citrate as Metabolic Biomarkers for Assessing Prostate Cancer Aggressiveness
Cited by: 141
Author(s): Guro F. Giskeødegård, Helena Bertilsson, Kirsten Margrete Selnæs, Alan J. Wright, Tone Frost Bathen, Trond Viset, Jostein Halgunset, Anders Angelsen, Ingrid S. Gribbestad, May‐Britt Tessem
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0186197

PG-Metrics: A chemometric-based approach for classifying bacterial peptidoglycan data sets and uncovering their subjacent chemical variability
Cited by: 6
Author(s): Keshav Kumar, Akbar Espaillat, Felipe Cava
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0061578

Feasibility of MR Metabolomics for Immediate Analysis of Resection Margins during Breast Cancer Surgery
Cited by: 59
Author(s): Tone Frost Bathen, Brigitte Geurts, Beathe Sitter, Hans E. Fjøsne, Steinar Lundgren, L.M.C. Buydens, Ingrid S. Gribbestad, G.J. Postma, Guro F. Giskeødegård
Software Mentions: 2
Published: over 11 years ago

10.3390/diagnostics10110936

Metabolomics of Interstitial Fluid, Plasma and Urine in Patients with Arterial Hypertension: New Insights into the Underlying Mechanisms
Cited by: 9
Author(s): Angelika Chachaj, Rafał Matkowski, Gerhard Gröbner, Andrzej Szuba, Ilona Dudka
Software Mentions: 2
Published: almost 4 years ago

10.3389/fonc.2016.00017

Impact of Freezing Delay Time on Tissue Samples for Metabolomic Studies
Cited by: 39
Author(s): Tonje Husby Haukaas, Siver Andreas Moestue, Riyas Vettukattil, Beathe Sitter, Santosh Lamichhane, Remedios Segura, Guro F. Giskeødegård, Tone Frost Bathen
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-019-43780-9

Novel Genes and Metabolite Trends in Bifidobacterium longum subsp. infantis Bi-26 Metabolism of Human Milk Oligosaccharide 2′-fucosyllactose
Cited by: 32
Author(s): Bryan Zabel, Christian C. Yde, Paige Roos, Jørn Marcussen, Henrik Max Jensen, Krista Salli, Johanna Hirvonen, Arthur C. Ouwehand, Wesley Morovic
Software Mentions: 2
Published: over 5 years ago

10.1186/s12937-019-0446-2

The 1H NMR serum metabolomics response to a two meal challenge: a cross-over dietary intervention study in healthy human volunteers
Cited by: 10
Author(s): Millie Rådjursöga, Helen M. Lindqvist, Anders Pedersen, Bengt Karlsson, Daniel Malmodin, Carl Brunius, Lars Ellegård, Anna Winkvist
Software Mentions: 2
Published: over 5 years ago

10.1152/ajpregu.00268.2016

Metabolic and functional characterization of effects of developmental temperature in <i>Drosophila melanogaster</i>
Cited by: 45
Author(s): Mads Fristrup Schou, Torsten Nygaard Kristensen, Anders Pedersen, Bengt Karlsson, Volker Loeschcke, Anders Malmendal
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12859-014-0413-z

Identification of metabolites from 2D 1H-13C HSQC NMR using peak correlation plots
Cited by: 21
Author(s): Tommy Öman, May‐Britt Tessem, Tone Frost Bathen, Helena Bertilsson, Anders Angelsen, Mattias Hedenström, Trygve Andreassen
Software Mentions: 1
Published: almost 10 years ago

10.3389/fpls.2020.575467

Genetic Variance of Metabolomic Features and Their Relationship With Malting Quality Traits in Spring Barley
Cited by: 6
Author(s): Xiangyu Guo, Pernille Sarup, J. Jensen, Jihad Orabi, Nanna Hellum Kristensen, Frans A. A. Mulder, A. Jahoor, Just Jensen
Software Mentions: 1
Published: about 4 years ago

10.1155/2018/4207067

Higher Concentrations of BCAAs and 3-HIB Are Associated with Insulin Resistance in the Transition from Gestational Diabetes to Type 2 Diabetes
Cited by: 37
Author(s): Ulrika Andersson‐Hall, Catharina Gustavsson, Anders Pedersen, Daniel Malmodin, Louise Joelsson, Agneta Holmäng
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-38832-z

Metabolomic and lipidomic plasma profile changes in human participants ascending to Everest Base Camp
Cited by: 28
Author(s): Katie A. O’Brien, R. Andrew Atkinson, Larissa Richardson, Albert Koulman, Andrew J. Murray, Stephen Harridge, Daniel Martin, Denny Levett, Kay Mitchell, Monty Mythen, Hugh Montgomery, Michael P.W. Grocott, Julian L. Griffin, Lindsay M. Edwards
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0182767

Identification of a discriminative metabolomic fingerprint of potential clinical relevance in saliva of patients with periodontitis using 1H nuclear magnetic resonance (NMR) spectroscopy
Cited by: 31
Author(s): Matthias Rzeznik, Mohamed N. Triba, Pierre Lévy, Sébastien Jungo, Eliot Patrick Botosoa, Boris Duchemann, Laurence Le Moyec, Jean-François Bernaudin, Philippe Savarin, Dominique Guez
Software Mentions: 1
Published: about 7 years ago

10.3390/nu10081063

Nutritional Metabolomics: Postprandial Response of Meals Relating to Vegan, Lacto-Ovo Vegetarian, and Omnivore Diets
Cited by: 22
Author(s): Millie Rådjursöga, Helen M. Lindqvist, Anders Pedersen, Bengt Karlsson, Daniel Malmodin, Lars Ellegård, Anna Winkvist
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0237201

Impacts of thermal fluctuations on heat tolerance and its metabolomic basis in Arabidopsis thaliana, Drosophila melanogaster, and Orchesella cincta
Cited by: 9
Author(s): Natasja Krog Noer, Majken Pagter, Simon Bahrndorff, Anders Malmendal, Torsten Nygaard Kristensen
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-58325-8

Molecular level study of hot water extracted green tea buried in soils - a proxy for labile soil organic matter
Cited by: 3
Author(s): Nicholle G. A. Bell, Alan Jay Smith, Yong Zhu, William H. Beishuizen, Kangwei Chen, Dan Forster, Yiran Ji, Elizabeth A. Knox
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2407-14-941

Metabolic characterization of triple negative breast cancer
Cited by: 115
Author(s): Maria Dung Cao, Santosh Lamichhane, Steinar Lundgren, Anna M. Bofin, Hans E. Fjösne, Guro F. Giskeødegård, Tone Frost Bathen
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12866-020-01849-w

Metabolic changes associated with adaptive resistance to daptomycin in Streptococcus mitis-oralis
Cited by: 8
Author(s): Allison Parrett, Joseph M. Reed, Stewart G. Gardner, Nagendra N. Mishra, Arnold S. Bayer, Robert Powers, Greg A. Somerville
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0131249

Phenotypic Characterisation of Shewanella oneidensis MR-1 Exposed to X-Radiation
Cited by: 5
Author(s): Ashley R. Brown, Elon Correa, Yun Xu, Najla AlMasoud, Simon M. Pimblott, Royston Goodacre, Jonathan R. Lloyd
Software Mentions: 1
Published: over 9 years ago

10.3390/metabo9070139

Ancient Danish Apple Cultivars—A Comprehensive Metabolite and Sensory Profiling of Apple Juices
Cited by: 12
Author(s): Nunzia Iaccarino, Camilla Varming, Mikael Agerlin Petersen, Nanna Viereck, Birk Schütz, Torben Bo Toldam‐Andersen, Antonio Randazzo, Søren Balling Engelsen
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0257331

Changes in serum and urinary metabolomic profile after a dietary intervention in patients with irritable bowel syndrome
Cited by: 5
Author(s): Sanna Nybacka, Magnus Simrén, Stine Störsrud, Hans Törnblom, Anna Winkvist, Helen M. Lindqvist
Software Mentions: 1
Published: about 3 years ago

10.18632/oncotarget.8625

Preclinical evaluation of the anti-tumor effects of the natural isoflavone genistein in two xenograft mouse models monitored by [18F]FDG, [18F]FLT, and [64Cu]NODAGA-cetuximab small animal PET
Cited by: 9
Author(s): Valerie S. Honndorf, Stefan Wiehr, Anna-Maria Rolle, Julia Schmitt, Luisa Kreft, L Quintanilla-Martinez, Ursula Kohlhofer, Gerald Reischl, Andreas Maurer, Karsten Boldt, Michael Schwarz, Holger Schmidt, Bernd J. Pichler
Software Mentions: 1
Published: over 8 years ago

10.3390/metabo9010013

Rapid Cerebral Metabolic Shift during Neonatal Sepsis Is Attenuated by Enteral Colostrum Supplementation in Preterm Pigs
Cited by: 7
Author(s): Masoumeh Alinaghi, Pingping Jiang, Anders Brunse, Per Torp Sangild, Hanne Christine Bertram
Software Mentions: 1
Published: almost 6 years ago

10.1007/s11306-012-0446-0

Data fusion in metabolomic cancer diagnostics
Cited by: 48
Author(s): Rasmus Bro, Hans Jørgen Nielsen, Francesco Savorani, Karin Kjeldahl, Ib Jarle Christensen, Nils Brünner, Anders J. Lawaetz
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2407-12-39

Prognostic value of metabolic response in breast cancer patients receiving neoadjuvant chemotherapy
Cited by: 66
Author(s): Maria Dung Cao, Guro F. Giskeødegård, Tone Frost Bathen, Beathe Sitter, Anna M. Bofin, Per Eystein Lønning, Steinar Lundgren, Ingrid S. Gribbestad
Software Mentions: 1
Published: almost 13 years ago

10.1007/s11306-018-1321-4

Recommended strategies for spectral processing and post-processing of 1D 1H-NMR data of biofluids with a particular focus on urine
Cited by: 101
Author(s): Abdul‐Hamid Emwas, Edoardo Saccenti, Xin Gao, Ryan McKay, Vítor A. P. Martins dos Santos, Raja Roy, David S. Wishart
Software Mentions: 1
Published: over 6 years ago

10.1186/s12934-017-0749-y

A combination of HPLC and automated data analysis for monitoring the efficiency of high-pressure homogenization
Cited by: 16
Author(s): Britta Eggenreich, Vignesh Rajamanickam, David Johannes Wurm, Jens Fricke, Christoph Herwig, Oliver Spadiut
Software Mentions: 1
Published: over 7 years ago

10.1007/s00216-016-9907-z

A novel toolbox for E. coli lysis monitoring
Cited by: 10
Author(s): Vignesh Rajamanickam, David Johannes Wurm, Christoph Slouka, Christoph Herwig, Oliver Spadiut
Software Mentions: 1
Published: about 8 years ago

10.3390/molecules25153339

NMR-Based Metabolic Profiling of Edible Olives—Determination of Quality Parameters
Cited by: 16
Author(s): Stavros Beteinakis, A Papachristodoulou, Georgia Gogou, S. Katsikis, Emmanuel Mikros, Maria Halabalaki
Software Mentions: 1
Published: over 4 years ago

10.3390/molecules26051472

A Metabolomic Approach to Beer Characterization
Cited by: 15
Author(s): Nicola Cavallini, Francesco Savorani, Rasmus Bro, Marina Cocchi
Software Mentions: 1
Published: over 3 years ago

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