Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: heatmapper
https://packages.ecosyste.ms/registries/pypi.org/packages/heatmapper
Python library for creating heatmap
1 version
Latest release: over 3 years ago
3 downloads last month
Papers Mentioning heatmapper 37
10.1111/1755-0998.13205
A new method of metabarcoding Microsporidia and their hosts reveals high levels of microsporidian infections in mosquitoes (Culicidae)Cited by: 25
Author(s): Artur Trzebny, Anna Słodkowicz-Kowalska, James J. Becnel, Neil D. Sanscrainte, Mirosława Dabert
Software Mentions: 6
Published: over 4 years ago
10.1074/mcp.RA120.002175
Transcriptome and Secretome Analysis of Intra-Mammalian Life-Stages of Calicophoron daubneyi Reveals Adaptation to a Unique Host EnvironmentCited by: 3
Author(s): Kathryn M. Huson, Erwan Atcheson, Nicola A.M. Oliver, Philip M. Best, J.P. Barley, R.E.B. Hanna, Tom N. McNeilly, Yongxiang Fang, Sam Haldenby, Steve Paterson, Mark W. Robinson
Software Mentions: 5
Published: almost 4 years ago
10.3390/cancers13061375
Automatic Detection of the Circulating Cell-Free Methylated DNA Pattern of GCM2, ITPRIPL1 and CCDC181 for Detection of Early Breast Cancer and Surgical Treatment ResponseCited by: 9
Author(s): Sheng Chao Wang, Li Min Liao, Muhamad Ansar, Shih Yun Lin, Wei‐Wen Hsu, Chih-Ming Su, Yu Mei Chung, Cai Cing Liu, Chin Sheng Hung, Ruo Kai Lin
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-021-82125-3
Broad specificity of immune helminth scFv library to identify monoclonal antibodies targeting StrongyloidesCited by: 9
Author(s): Anizah Rahumatullah, Dinesh Balachandra, Rahmah Noordin, Zamrina Baharudeen, Yee Ying Lim, Yee Siew Choong, Theam Soon Lim
Software Mentions: 3
Published: almost 4 years ago
10.3389/fimmu.2018.01666
Dynamic Interplay of Innate and Adaptive Immunity During Sterile Retinal Inflammation: Insights From the TranscriptomeCited by: 8
Author(s): Riccardo Natoli, Elizabeth A. Mason, Haihan Jiao, Aaron Chuah, Hardip R. Patel, Nilisha Fernando, Krisztina Valter, Christine A. Wells, Jan Provis, Matt Rutar
Software Mentions: 3
Published: over 6 years ago
10.1186/s12864-020-07234-1
Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonicaCited by: 6
Author(s): Zhen-Dong Cao, David Rosenkranz, Shi-Fang Wu, Hongjin Liu, Qiuxiang Pang, Xiufang Zhang, Baohua Liu, Baisuo Zhao
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-021-95289-9
Intratumour heterogeneity in microRNAs expression regulates glioblastoma metabolismCited by: 6
Author(s): Huda Alfardus, Maria Estevez-Cebrero, Jonathan Rowlinson, Amna Aboalmaaly, Anbarasu Lourdusamy, Salah Abdelrazig, Catharine A. Ortori, Richard G. Grundy, Dong-Hyun Kim, Alan McIntyre, Stuart Smith
Software Mentions: 2
Published: over 3 years ago
10.1002/ijc.32624
JAK–STAT inhibition impairs K‐RAS‐driven lung adenocarcinoma progressionCited by: 50
Author(s): Julian Mohrherr, Marcel Haber, Kristina Breitenecker, Petra Aigner, Stefan Moritsch, Viktor Voronin, Robert Eferl, Richard Moriggl, Dagmar Stoiber, Balázs Győrffy, Luka Brčić, Viktória László, Balázs Döme, Judit Moldvay, Katalin Dezsö, Martin Bilban, Helmut Popper, Herwig P. Moll, Emilio Casanova
Software Mentions: 2
Published: about 5 years ago
10.3389/fpls.2021.652570
Molecular Analysis of the E2F/DP Gene Family of Daucus carota and Involvement of the DcE2F1 Factor in Cell ProliferationCited by: 2
Author(s): Lara Perrotta, Roberta Giordo, Dennis Francis, Hilary J. Rogers, Diego Albani
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-020-62183-9
Microbial community profiling of ammonia and nitrite oxidizing bacterial enrichments from brackishwater ecosystems for mitigating nitrogen speciesCited by: 55
Author(s): Viswanathan Baskaran, Prasanna Kumar Patil, M. Leo Antony, Satheesha Avunje, Vinay Tharabenahalli Nagaraju, Sudeep D. Ghate, Suganya Nathamuni, N. Dineshkumar, S.V. Alavandi, K. Vijayan
Software Mentions: 2
Published: over 4 years ago
10.7554/eLife.47970
Screening identifies small molecules that enhance the maturation of human pluripotent stem cell-derived myotubesCited by: 42
Author(s): Sridhar Selvaraj, Ricardo Mondragón-González, Bin Xu, Alessandro Magli, Hyunkee Kim, Jeanne Lainé, James P. Kiley, Holly Mckee, Fabrizio Rinaldi, Joy Aho, Nacira Tabti, Rita C.R. Perlingeiro
Software Mentions: 2
Published: about 5 years ago
10.3390/genes10030194
Halobacterium salinarum virus ChaoS9, a Novel Halovirus Related to PhiH1 and PhiCh1Cited by: 11
Author(s): Mike Dyall‐Smith, Peter Palm, Gerhard Wanner, Angela Witte, Dieter Oesterhelt, Friedhelm Pfeiffer
Software Mentions: 2
Published: over 5 years ago
10.3389/fmicb.2019.02353
Genetic Diversity of Campylobacter jejuni Isolated From Avian and Human Sources in EgyptCited by: 24
Author(s): Marwa I. Abd El-Hamid, Norhan K. Abd El-Aziz, Mohamed Samir, El-Sayed Y El-Naenaeey, Etab M. Abo Remela, Rasha Mosbah, Mahmoud M. Bendary
Software Mentions: 1
Published: about 5 years ago
10.3389/fpls.2021.645689
Identification and Regulation of Tomato Serine/Arginine-Rich Proteins Under High TemperaturesCited by: 10
Author(s): Remus Rosenkranz, Samia Bachiri, Stavros Vraggalas, Mario Keller, Stefan Simm, Enrico Schleiff, Sotirios Fragkostefanakis
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2021.613845
Grafting Snake Melon [Cucumis melo L. subsp. melo Var. flexuosus (L.) Naudin] in Organic Farming: Effects on Agronomic Performance; Resistance to Pathogens; Sugar, Acid, and VOC Profiles; and Consumer AcceptanceCited by: 13
Author(s): Alejandro Flores-León, Santiago García‐Martínez, Vicente Ferreira González, Ana Garcés-Claver, Raúl Martí, Carmen Julián, Alicia Sifres, Ana Pérez‐de‐Castro, María José Díez, Carmelo López, M. Ferriol, Carmina Gisbert, José L. Ruiz, Jaime Cebolla-Cornejo, Belén Picó
Software Mentions: 1
Published: almost 4 years ago
10.3390/ht8040018
Expression Profiling of Candidate Genes in Sugar Beet Leaves Treated with Leonardite-Based BiostimulantCited by: 6
Author(s): Hanifeh Seyed Hajizadeh, Bahram Heidari, Giovanni Bertoldo, Maria Cristina Della Lucia, Francesco Magro, Chiara Broccanello, Andrea Baglieri, Ivana Puglisi, Andrea Squartini, G. Campagna, Giuseppe Concheri, Serenella Nardi, Piergiorgio Stevanato
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-018-24421-z
Directed reprogramming of comprehensively characterized dental pulp stem cells extracted from natal toothCited by: 15
Author(s): Rishikaysh Pisal, J Suchánek, Richard Siller, Tomáš Soukup, Hana Hrebíková, Aleš Bezrouk, David Kunke, Stanislav Mičuda, Stanislav Filip, Gareth J. Sullivan, Jaroslav Mokrý
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-26103-2
The modulation of acetic acid pathway genes in Arabidopsis improves survival under drought stressCited by: 53
Author(s): Sultana Rasheed, Khurram Bashir, Jong-Myong Kim, Marina Ando, Maho Tanaka, Motoaki Seki
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-020-64914-4
In vitro passage alters virulence, immune activation and proteomic profiles of Burkholderia pseudomalleiCited by: 8
Author(s): Taksaon Duangurai, Onrapak Reamtong, Amporn Rungruengkitkun, Varintip Srinon, Usa Boonyuen, Direk Limmathurotsakul, Narisara Chantratita, Pornpan Pumirat
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-75636-y
Comprehensive ESI-Q TRAP-MS/MS based characterization of metabolome of two mango (Mangifera indica L) cultivars from ChinaCited by: 24
Author(s): Lin Tan, Zhiqiang Jin, Ge Yu, Habibullah Nadeem, Zhihao Cheng, Farrukh Azeem, Rulin Zhan
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-021-96076-2
Key features of the environment promoting liver cancer in the absence of cirrhosisCited by: 12
Author(s): Marco Y.W. Zaki, Ahmed Khairallah Mahdi, Gillian Patman, Anna Whitehead, João Maurício, Misti McCain, Despina Televantou, Sameh Abou-Beih, Erik Ramon‐Gil, Robyn Watson, Charlotte V. Cox, Jack Leslie, Caroline Wilson, Olivier Govaere, John Lunec, Derek A. Mann, Sirintra Nakjang, Fiona Oakley, Ruchi Shukla, Quentin M. Anstee, Dina Tiniakos, Helen L. Reeves
Software Mentions: 1
Published: over 3 years ago
10.1007/s12015-018-9845-6
Islet-Like Structures Generated In Vitro from Adult Human Liver Stem Cells Revert Hyperglycemia in Diabetic SCID MiceCited by: 21
Author(s): Víctor Navarro-Tableros, Chiara Gai, Yonathan Gomez, Sara Giunti, Chiara Pasquino, Maria Chiara Deregibus, Marta Tapparo, Adriana Pitino, Ciro Tetta, Maria Felice Brizzi, Camillo Ricordi, Giovanni Camussi
Software Mentions: 1
Published: about 6 years ago
10.1128/mBio.01534-20
A Novel Mycovirus Evokes Transcriptional Rewiring in the Fungus <i>Malassezia</i> and Stimulates Beta Interferon Production in MacrophagesCited by: 25
Author(s): Shelly Applen Clancey, Fiorella Ruchti, Salomé LeibundGut‐Landmann, Joseph Heitman, Giuseppe Ianiri
Software Mentions: 1
Published: about 4 years ago
10.3390/jof6030162
Microglial Response to Aspergillus flavus and Candida albicans: Implications in EndophthalmitisCited by: 3
Author(s): Jaishree Gandhi, Poonam Naik, Inderjeet Kaur, Ashok Kumar, Joveeta Joseph
Software Mentions: 1
Published: about 4 years ago
10.1007/s12031-020-01526-7
A Combined Proteomics and Bioinformatics Approach Reveals Novel Signaling Pathways and Molecular Targets After Intracerebral HemorrhageCited by: 6
Author(s): Rajaneekar Dasari, Wenbo Zhi, Frederick Bonsack, Sangeetha Sukumari‐Ramesh
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms22073787
Phosphorylation of GAPVD1 Is Regulated by the PER Complex and Linked to GAPVD1 DegradationCited by: 2
Author(s): Hussam Ibrahim, Philipp Reus, Anna Katharina Mundorf, Anna-Lena Grothoff, Valerie Rudenko, Christina Buschhaus, Anja Stefanski, Niklas Berleth, Björn Stork, Kai Stühler, Faiza Kalfalah, Hans Reinke
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2164-10-73
Three LIF-dependent signatures and gene clusters with atypical expression profiles, identified by transcriptome studies in mouse ES cells and early derivativesCited by: 29
Author(s): Marina Trouillas, Claire Saucourt, Bertrand Guillotin, Xavier Gauthereau, Li Ding, Frank Buchholz, Michael Xavier Doss, Agapios Sachinidis, Jürgen Hescheler, Oliver Hummel, Norbert Huebner, Raivo Kolde, Jaak Vilo, Herbert Schulz, Hélène Bœuf
Software Mentions: 1
Published: almost 16 years ago
10.1186/s12917-020-02380-w
Multilocus sequence typing characterizes diversity of Ureaplasma diversum strains, and intra-species variability induces different immune response profilesCited by: 4
Author(s): Yasmin M.F.S. Andrade, Manoel Neres Santos Júnior, Izadora S. Rezende, Maysa Santos Barbosa, Aline Teixeira Amorim, Ícaro B. S. Silva, Éllunny Chaves Queiroz, Bruno Lopes Bastos, Guilherme Barreto Campos, Jorge Timenetsky, Lucas Miranda Marques
Software Mentions: 1
Published: over 4 years ago
10.3390/microorganisms8111758
Streptococcus Thermophilus UASt-09 Upregulates Goblet Cell Activity in Colonic Epithelial Cells to a Greater Degree than other Probiotic StrainsCited by: 7
Author(s): Madhur D. Shastri, Wai Chin Chong, Ravichandra Vemuri, Christopher Martoni, Santosh Adhikari, Harinder Bhullar, Dale Kunde, Stephen Tristram, Rajaraman Eri
Software Mentions: 1
Published: about 4 years ago
10.3390/molecules24010163
Contributions and Challenges of High Throughput qPCR for Determining Antimicrobial Resistance in the Environment: A Critical ReviewCited by: 74
Author(s): Hassan Waseem, Sana Jameel, Jafar Ali, Hamza Saleem ur Rehman, Isfahan Tauseef, Umar Farooq, A. Rahman A. Jamal, Muhammad Ishtiaq Ali
Software Mentions: 1
Published: almost 6 years ago
10.3390/v12101117
Electrostatic Surface Properties of Blood and Semen Extracellular Vesicles: Implications of Sialylation and HIV-Induced Changes on EV InternalizationCited by: 18
Author(s): Hussein Kaddour, Tyler D. Panzner, Jennifer L. Welch, Nadia Shouman, Mahesh Mohan, Jack T. Stapleton, Chioma M. Okeoma
Software Mentions: 1
Published: about 4 years ago
10.3390/v12111215
High Rate of Circulating MERS-CoV in Dromedary Camels at Slaughterhouses in Riyadh, 2019Cited by: 12
Author(s): Taibah A. Aljasim, Abdulrahman Almasoud, Haya A. Aljami, Mohamed W. Alenazi, Suliman A. Alsagaby, Asma N. Alsaleh, Naif Khalaf Alharbi
Software Mentions: 1
Published: about 4 years ago
10.1051/parasite/2019033
Transcriptome and excretory–secretory proteome of infective-stage larvae of the nematode <i>Gnathostoma spinigerum</i> reveal potential immunodiagnostic targets for developmentCited by: 11
Author(s): Supaporn Nuamtanong, Onrapak Reamtong, Orawan Phuphisut, Palang Chotsiri, Preeyarat Malaithong, Paron Dekumyoy, Poom Adisakwattana
Software Mentions: 1
Published: almost 6 years ago
10.7717/peerj.9553
Interdependency of regulatory effects of iron and riboflavin in the foodborne pathogen Shigella flexneri determined by integral transcriptomicsCited by: 0
Author(s): Luis Fernando Lozano Aguirre, Juan Carlos Salazar, José Ignacio Vásquez, Víctor Antonio García-Angulo
Software Mentions: 1
Published: about 4 years ago
10.3390/cancers10030068
Tannic Acid Induces Endoplasmic Reticulum Stress-Mediated Apoptosis in Prostate CancerCited by: 43
Author(s): Prashanth K.B. Nagesh, Elham Hatami, Pallabita Chowdhury, Vivek K. Kashyap, Sheema Khan, Bilal Bin Hafeez, Subhash C. Chauhan, Meena Jaggi, Murali M. Yallapu
Software Mentions: 1
Published: over 6 years ago
10.3390/cells10082162
Proteomic Analysis of Hydromethylthionine in the Line 66 Model of Frontotemporal Dementia Demonstrates Actions on Tau-Dependent and Tau-Independent NetworksCited by: 1
Author(s): Karima Schwab, Valeria Melis, Charles R. Harrington, Claude M. Wischik, Mandy Magbagbeolu, Franz Theuring, Gernot Riedel
Software Mentions: 1
Published: over 3 years ago
10.3390/cells9081825
Cardiomyocyte Transplantation after Myocardial Infarction Alters the Immune Response in the HeartCited by: 9
Author(s): Praveen Vasudevan, Markus Wolfien, Heiko Lemcke, Cajetan Immanuel Lang, Anna Skorska, Ralf Gaebel, Dirk Koczan, Tobias Lindner, Robby Engelmann, Brigitte Vollmar, Bernd J. Krause, Olaf Wolkenhauer, Hermann Lang, Gustav Steinhoff, Róbert Dávid
Software Mentions: 1
Published: over 4 years ago