Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: CR
https://packages.ecosyste.ms/registries/pypi.org/packages/CR
The official CodeRed Cloud command line tool.
2 versions
Latest release: over 1 year ago
239 downloads last month
Papers Mentioning CR 45
10.1107/S2053273319011446
Bayesian machine learning improves single-wavelength anomalous diffraction phasingCited by: 10
Author(s): María-José García-Bonete, Gergely Katona
Software Mentions: 7
Published: about 5 years ago
10.1098/rsos.171830
Lepidosaurian diversity in the Mesozoic–Palaeogene: the potential roles of sampling biases and environmental driversCited by: 34
Author(s): Terri J. Cleary, Roger Benson, Susan E. Evans, Paul M. Barrett
Software Mentions: 6
Published: over 6 years ago
10.1186/1471-2105-8-431
Comparative evaluation of gene-set analysis methodsCited by: 94
Author(s): Qi Liu, Irina Dinu, Adeniyi J. Adewale, John D. Potter, Yutaka Yasui
Software Mentions: 2
Published: about 17 years ago
10.3390/s20247013
Deep Feature Extraction and Classification of Android Malware ImagesCited by: 34
Author(s): Jaiteg Singh, Deepak Thakur, Farman Ali, Tanya Gera, Kyung Sup Kwak
Software Mentions: 2
Published: almost 4 years ago
10.1002/ece3.6642
Incorporating capture heterogeneity in the estimation of autoregressive coefficients of animal population dynamics using capture–recapture dataCited by: 7
Author(s): Pedro G. Nicolau, Sigrunn Holbek Sørbye, Nigel G. Yoccoz
Software Mentions: 2
Published: about 4 years ago
10.1002/hsr2.179
The capacity of schizophrenia and bipolar disorder individuals to make autonomous decisions about pharmacological treatments for their illness in real life: A scoping reviewCited by: 4
Author(s): Enric Vincens Pons, Luis Salvador‐Carulla, Alfredo Calcedo‐Barba, S. Paz, Thomas Messer, Bruno Pacciardi, Scott L. Zeller
Software Mentions: 2
Published: over 4 years ago
10.3389/fmicb.2017.00849
Bacterial Root Microbiome of Plants Growing in Oil Sands Reclamation CoversCited by: 75
Author(s): Eduardo K. Mitter, J. R. de Freitas, James J. Germida
Software Mentions: 2
Published: over 7 years ago
10.1120/jacmp.v17i2.5783
Assessment of radiobiological metrics applied to patient‐specific QA process of VMAT prostate treatmentsCited by: 9
Author(s): Francisco Clemente-Gutiérrez, C Pérez-Vara, María H. Clavo-Herranz, Concepción López-Carrizosa, J. Pérez-Regadera, Carmen Ibáñez-Villoslada
Software Mentions: 2
Published: over 8 years ago
10.1002/ece3.5119
Conservation genetics of the pond bat (<i>Myotis dasycneme</i>) with special focus on the populations in northwestern Germany and in Jutland, DenmarkCited by: 5
Author(s): Liselotte Wesley Andersen, Ronja Dirksen, Elena A. Nikulina, Hans J. Baagøe, Gunārs Pētersons, Péter Estók, Oleg L. Orlov, Maria V. Orlova, Florian Gloza‐Rausch, Matthias Göttsche, Esben Terp Fjederholt, Frauke Krüger, Morten Elmeros
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-020-74762-x
ENSO diversity driving low-frequency change in mesoscale activity off Peru and ChileCited by: 7
Author(s): Carlos Conejero, Boris Dewitte, Véronique Garçon, Joël Sudre, Ivonne Montès
Software Mentions: 2
Published: about 4 years ago
10.2349/biij.1.2.e12
Practical guidelines for radiographers to improve computed radiography image qualityCited by: 23
Author(s): Napapong Pongnapang
Software Mentions: 1
Published: about 19 years ago
10.1155/2016/9276508
A Virtual Reality-Cycling Training System for Lower Limb Balance ImprovementCited by: 14
Author(s): Chieh Yin, Ya-Hsin Hsueh, Chia-Yu Yeh, Hsin-Chang Lo, Yi-Ting Lan
Software Mentions: 1
Published: almost 9 years ago
10.21470/1678-9741-2020-0602
Reasons to Keep “Case Reports” AliveCited by: 2
Author(s): Paulo Roberto Barbosa Évora, Domingo Marcolino Braile
Software Mentions: 1
Published: almost 5 years ago
10.14202/vetworld.2018.488-496
Radiographic prediction of metallic foreign body penetration in the reticulum of cows and buffaloesCited by: 5
Author(s): Shanib Mehraj Makhdoomi, Vandana Sangwan, Ashwani Kumar
Software Mentions: 1
Published: over 6 years ago
10.7717/peerj.6681
Microfluidic chip combined with magnetic-activated cell sorting technology for tumor antigen-independent sorting of circulating hepatocellular carcinoma cellsCited by: 13
Author(s): Xuebin Wang, Li‐Ying Sun, Haiming Zhang, Wei Lin, Wei Qu, Zhili Zeng, Ying Liu, Zhi‐Jun Zhu
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0056388
Calorie Restriction Hysteretically Primes Aging Saccharomyces cerevisiae toward More Effective Oxidative MetabolismCited by: 24
Author(s): Erich Birelli Tahara, Fernanda Marques da Cunha, Thiago Olitta Basso, Bianca E. Della Bianca, Andreas Gombert, Alicia J. Kowaltowski
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0199775
Patient reported measures of informed consent for clinical trials: A systematic reviewCited by: 14
Author(s): Katie Gillies, A. Bradley Duthie, Seonaidh Cotton, Marion K Campbell
Software Mentions: 1
Published: over 6 years ago
10.1002/open.201700046
Electronic π-to-π* Excitations of Rhodamine Dyes Exhibit a Time-Dependent Kohn-Sham Theory “Cyanine Problem”Cited by: 19
Author(s): Barry D. Moore, Robert Schrader, Karol Kowalski, Jochen Autschbach
Software Mentions: 1
Published: over 7 years ago
10.1002/ece3.2319
Genetic diversity and evolutionary history of the <i>Schizothorax</i> species complex in the Lancang River (upper Mekong)Cited by: 15
Author(s): Weitao Chen, Yanjun Shen, Xiangchao Gan, Xuzhen Wang, Shunping He
Software Mentions: 1
Published: over 8 years ago
10.3389/fimmu.2021.637829
Role of the IL-23/IL-17 Pathway in Rheumatic Diseases: An OverviewCited by: 103
Author(s): Claudia Schinocca, Carla Rizzo, Serena Fasano, Giulia Grasso, Lidia La Barbera, Francesco Ciccia, Giuliana Guggino
Software Mentions: 1
Published: over 3 years ago
10.3389/fmolb.2018.00114
The Evolution and the Advantages of MicroEDCited by: 12
Author(s): Brent L. Nannenga, Guanhong Bu, Dan Shi
Software Mentions: 1
Published: almost 6 years ago
10.3389/fonc.2021.709511
Application Research of Individualized Conditional Reprogramming System to Guide Treatment of Gastric CancerCited by: 2
Author(s): Weizhu Zhao, Kai Li, Zhen Sun, Longgang Wang, Bing Liu, Luguang Liu, Xianlin Qu, Zhixiang Cao, Jian Sun, Jie Chai
Software Mentions: 1
Published: over 3 years ago
10.3389/fpsyt.2017.00304
Cognitive Remediation for Schizophrenia with Focus on NEARCited by: 4
Author(s): Tamiko Mogami
Software Mentions: 1
Published: almost 7 years ago
10.3389/fpsyg.2018.01952
Maternal Personality and Child Temperamental Reactivity: Differential Susceptibility for Child Externalizing Behavioral Problems in ChinaCited by: 5
Author(s): Shufen Xing, Xin Gao, Xia Liu, Yuanyuan Ma, Zhengyan Wang
Software Mentions: 1
Published: about 6 years ago
10.1007/s13244-015-0411-3
False positive and false negative diagnoses of prostate cancer at multi-parametric prostate MRI in active surveillanceCited by: 70
Author(s): Jeffrey S. Quon, Bardia Moosavi, Maneesh Khanna, Trevor A. Flood, Christopher Lim, Nicola Schieda
Software Mentions: 1
Published: over 9 years ago
10.1007/s13244-016-0518-1
Cinematic rendering – an alternative to volume rendering for 3D computed tomography imagingCited by: 127
Author(s): Evelyn Dappa, Kai Higashigaito, Jürgen Fornaro, Sebastian Leschka, Simon Wildermuth, Hatem Alkadhi
Software Mentions: 1
Published: about 8 years ago
10.1093/icb/icz120
High-Density Morphometric Analysis of Shape and Integration: The Good, the Bad, and the Not-Really-a-ProblemCited by: 62
Author(s): Anjali Goswami, Akinobu Watanabe, Ryan N. Felice, Carla Bardua, Anne‐Claire Fabre, P. David Polly
Software Mentions: 1
Published: over 5 years ago
10.1120/jacmp.v14i4.4122
Evaluation of different techniques for CT radiation profile width measurementCited by: 12
Author(s): Steven R. Jackson, Salahuddin Ahmad, Yanping Hu, Chun Ruan
Software Mentions: 1
Published: over 11 years ago
10.1038/s41598-019-46542-9
Role of Andaman and Nicobar Islands in eddy formation along western boundary of the Bay of BengalCited by: 19
Author(s): A. Mukherjee, Abhisek Chatterjee, P. A. Francis
Software Mentions: 1
Published: over 5 years ago
10.3390/s18010184
A Time-Domain Analog Spatial Compressed Sensing Encoder for Multi-Channel Neural RecordingCited by: 8
Author(s): Takayuki Okazawa, Ippei Akita
Software Mentions: 1
Published: almost 7 years ago
10.3390/s21082810
Lightweight Digital Certificate Management and Efficacious Symmetric Cryptographic Mechanism over Industrial Internet of ThingsCited by: 8
Author(s): Adel Ali Ahmed
Software Mentions: 1
Published: over 3 years ago
10.2196/mhealth.5501
Remotely Delivered Exercise-Based Cardiac Rehabilitation: Design and Content Development of a Novel mHealth PlatformCited by: 36
Author(s): Jonathan C Rawstorn, Nicholas Gant, Andrew Meads, Ian Warren, Ralph Maddison
Software Mentions: 1
Published: over 8 years ago
10.3390/ijms22157838
New Insights into Cancer Targeted Therapy: Nodal and Cripto-1 as Attractive CandidatesCited by: 2
Author(s): Paola Arboretto, Michele Cillo, Antonio Leonardi
Software Mentions: 1
Published: over 3 years ago
10.1007/s00702-020-02159-1
Recent advances in our understanding of the organization of dorsal horn neuron populations and their contribution to cutaneous mechanical allodyniaCited by: 64
Author(s): Cédric Peirs, Radhouane Dallel, Andrew J. Todd
Software Mentions: 1
Published: over 4 years ago
10.1111/os.12759
<scp>Bland–Altman</scp> Analysis of Different Radiographic Measurements of the Hallux Valgus Angle and the Intermetatarsal Angle After Distal OsteotomyCited by: 3
Author(s): Xuhan Cao, Zixing Bai, Chengyi Sun, Jie Wen, Xiang Lin, Weidong Sun
Software Mentions: 1
Published: about 4 years ago
10.3390/nu12102948
Impacts of Calorie Restriction and Intermittent Fasting on Health and Diseases: Current TrendsCited by: 6
Author(s): Hae Young Chung, Dae Hyun Kim, EunJin Bang, Byung Pal Yu
Software Mentions: 1
Published: about 4 years ago
10.1186/s12859-016-1317-x
Disease gene prioritization by integrating tissue-specific molecular networks using a robust multi-network modelCited by: 31
Author(s): Jingchao Ni, Mehmet Koyutürk, Hanghang Tong, Jonathan L. Haines, Rong Xu, Xiang Zhang
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12885-018-5135-6
Validation of Quality of Life Instruments for Cancer Patients – Colorectal Cancer (QLICP-CR) in patients with colorectal cancer in Northeast ChinaCited by: 5
Author(s): Min Liu, Wei Sun, Cai Xu Yue, Huazhang Wu
Software Mentions: 1
Published: almost 6 years ago
10.1186/1471-2148-8-312
The tree of genomes: An empirical comparison of genome-phylogeny reconstruction methodsCited by: 12
Author(s): A. McCann, James A. Cotton, James O. McInerney
Software Mentions: 1
Published: almost 16 years ago
10.1186/s12862-015-0463-5
Estimating the molecular evolutionary rates of mitochondrial genes referring to Quaternary ice age events with inferred population expansions and dispersals in Japanese ApodemusCited by: 40
Author(s): Yutaro Suzuki, Morihiko Tomozawa, Yuki Koizumi, Koichiro Tsuchiya, Hitoshi Suzuki
Software Mentions: 1
Published: about 9 years ago
10.1186/s12863-016-0466-2
A compendium of human genes regulating feeding behavior and body weight, its functional characterization and identification of GWAS genes involved in brain-specific PPI networkCited by: 14
Author(s): E. V. Ignatieva, D. A. Afonnikov, Olga V. Saik, Evgeny I. Rogaev, Nikolay А. Kolchanov
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12916-020-01654-2
Processes of consent in research for adults with impaired mental capacity nearing the end of life: systematic review and transparent expert consultation (MORECare_Capacity statement)Cited by: 21
Author(s): Catherine Evans, Emel Yorganci, Penney Lewis, Jonathan Koffman, Katie Stone, India Tunnard, Bee Wee, W. Bernal, Matthew Hotopf, Irene J Higginson
Software Mentions: 1
Published: over 4 years ago
10.1186/1471-2431-12-156
Assessing children’s competence to consent in research by a standardized tool: a validity studyCited by: 39
Author(s): Irma Hein, Pieter W. Troost, Robert Lindeboom, Martine C. de Vries, C. Michel Zwaan, Ramón Lindauer
Software Mentions: 1
Published: about 12 years ago
10.1186/s12918-014-0096-0
Modeling the dependence of respiration and photosynthesis upon light, acetate, carbon dioxide, nitrate and ammonium in Chlamydomonas reinhardtiiusing design of experiments and multiple regressionCited by: 18
Author(s): Stéphanie Gérin, Grégory Mathy, Fabrice Franck
Software Mentions: 1
Published: about 10 years ago
10.1017/S1352465815000168
The Feasibility and Acceptability to Service Users of CIRCuiTS, a Computerized Cognitive Remediation Therapy Programme for SchizophreniaCited by: 60
Author(s): Clare Reeder, Victoria Pile, Polly Joanna Crawford, Matteo Cella, Diana Rose, Til Wykes, Andrew Watson, Vyv Huddy, Felicity Callard
Software Mentions: 1
Published: over 9 years ago