pypi: Matador | Projects | Ecosyste.ms: Papers

10.1186/s13321-016-0146-2

BioTriangle: a web-accessible platform for generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions
Cited by: 36
Author(s): Jie Dong, Zhi‐Jiang Yao, Ming Wen, Min Zhu, Ningning Wang, Hongyu Miao, Aiping Lu, Wenbin Zeng, Dong‐Sheng Cao
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0191006

A census of P. longum’s phytochemicals and their network pharmacological evaluation for identifying novel drug-like molecules against various diseases, with a special focus on neurological disorders
Cited by: 33
Author(s): Neha Choudhary, Vikram Singh
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0106298

Adverse Drug Reaction Prediction Using Scores Produced by Large-Scale Drug-Protein Target Docking on High-Performance Computing Machines
Cited by: 56
Author(s): Montiago X. LaBute, Xiaohua Zhang, Jason Lenderman, Brian J. Bennion, Sergio E. Wong, Felice C. Lightstone
Software Mentions: 5
Published: over 10 years ago

10.1186/s12859-021-04327-w

DTI-HeNE: a novel method for drug-target interaction prediction based on heterogeneous network embedding
Cited by: 14
Author(s): Yue Yang, Shan He
Software Mentions: 4
Published: over 3 years ago

10.3390/s150818613

Scalable and Cost-Effective Assignment of Mobile Crowdsensing Tasks Based on Profiling Trends and Prediction: The ParticipAct Living Lab Experience
Cited by: 28
Author(s): Paolo Bellavista, Antonio Corradi, Luca Foschini, Raffaele Ianniello
Software Mentions: 4
Published: over 9 years ago

10.1186/s12967-018-1535-2

In silico identification of drug target pathways in breast cancer subtypes using pathway cross-talk inhibition
Cited by: 22
Author(s): Claudia Cava, Gloria Bertoli, Isabella Castiglioni
Software Mentions: 3
Published: over 6 years ago

10.3390/e23020225

Patient-Specific Network for Personalized Breast Cancer Therapy with Multi-Omics Data
Cited by: 5
Author(s): Claudia Cava, Soudabeh Sabetian, Isabella Castiglioni
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0066952

Predicting Drug-Target Interactions for New Drug Compounds Using a Weighted Nearest Neighbor Profile
Cited by: 191
Author(s): Twan van Laarhoven, Elena Marchiori
Software Mentions: 2
Published: over 11 years ago

10.1186/s12920-015-0158-1

Predicting target proteins for drug candidate compounds based on drug-induced gene expression data in a chemical structure-independent manner
Cited by: 34
Author(s): Yoshiyuki Hizukuri, Ryusuke Sawada, Yoshihiro Yamanishi
Software Mentions: 2
Published: about 9 years ago

10.3390/v12040404

In Silico Discovery of Candidate Drugs against Covid-19
Cited by: 146
Author(s): Claudia Cava, Gloria Bertoli, Isabella Castiglioni
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-018-29516-1

KampoDB, database of predicted targets and functional annotations of natural medicines
Cited by: 8
Author(s): Ryusuke Sawada, Makoto Iwata, Masahito Umezaki, Yoshihiko Usui, Toshikazu Kobayashi, Takaki Kubono, Satoru Hayashi, Makoto Kadowaki, Yoshihiro Yamanishi
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0010431

A Comprehensive Panel of Three-Dimensional Models for Studies of Prostate Cancer Growth, Invasion and Drug Responses
Cited by: 298
Author(s): Ville Härmä, Johannes Virtanen, Rami Mäkelä, Antti P. Happonen, John-Patrick Mpindi, Matti Knuuttila, Pekka Kohonen, Jyrki Lötjönen, Olli Kallioniemi, Matthias Nees
Software Mentions: 2
Published: over 14 years ago

10.3390/molecules22071119

Prediction of Drug–Target Interaction Networks from the Integration of Protein Sequences and Drug Chemical Structures
Cited by: 60
Author(s): Fei Meng, Zhu-Hong You, Xing Chen, Yong Zhou, Jiyong An
Software Mentions: 1
Published: over 7 years ago

10.3390/molecules23123193

Adverse Drug Reaction Predictions Using Stacking Deep Heterogeneous Information Network Embedding Approach
Cited by: 20
Author(s): Baofang Hu, Hong Wang, Lutong Wang, Weihua Yuan
Software Mentions: 1
Published: about 6 years ago

10.3390/molecules24091714

Revealing Drug-Target Interactions with Computational Models and Algorithms
Cited by: 42
Author(s): Liqian Zhou, Zejun Li, Jialiang Yang, Geng Tian, Fuxing Liu, Qinghui Chen, Peng Li, Min Chen, Xu Ju, Lihong Peng
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.2524

Controlled-release of<i>Bacillus thurigiensis</i>formulations encapsulated in light-resistant colloidosomal microcapsules for the management of lepidopteran pests of<i>Brassica</i>crops
Cited by: 27
Author(s): Oumar Bashir, Jérôme P. Claverie, Pierre Lemoyne, Charles Vincent
Software Mentions: 1
Published: about 8 years ago

10.3390/pharmaceutics11090466

A Multi-Label Learning Framework for Drug Repurposing
Cited by: 13
Author(s): Suyu Mei, Kun Zhang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1004760

Neighborhood Regularized Logistic Matrix Factorization for Drug-Target Interaction Prediction
Cited by: 274
Author(s): Yong Liu, Min Wu, Chunyan Miao, Peilin Zhao, Yuanyuan Liu
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0230726

Modified linear regression predicts drug-target interactions accurately
Cited by: 14
Author(s): Krisztián Búza, Ladislav Peška, Júlia Koller
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2164-14-S4-S1

Exploring drug-target interaction networks of illicit drugs
Cited by: 10
Author(s): Ravi V. Atreya, Jingjing Sun, Zhongming Zhao
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0022187

Network Neighbors of Drug Targets Contribute to Drug Side-Effect Similarity
Cited by: 86
Author(s): Lucas Brouwers, Murat Iskar, Georg Zeller, Vera van Noort, Peer Bork
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0220925

Automated recognition of functional compound-protein relationships in literature
Cited by: 2
Author(s): Kersten Döring, Ammar Qaseem, Michael Becer, Jianyu Li, Pankaj Mishra, Mingjie Gao, Pascal A. Kirchner, Florian Sauter, Kiran K. Telukunta, Aurélien F. A. Moumbock, Philippe Thomas, Stefan Günther
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12859-016-1041-6

DrugQuest - a text mining workflow for drug association discovery
Cited by: 25
Author(s): Nikolas Papanikolaou, Georgios A. Pavlopoulos, Θεοδόσιος Θεοδοσίου, Ioannis S. Vizirianakis, Ioannis Iliopoulos
Software Mentions: 1
Published: over 8 years ago

10.1155/2013/621423

Network Pharmacology: A New Approach for Chinese Herbal Medicine Research
Cited by: 138
Author(s): Gui-biao Zhang, Qing-Ya Li, Qilong Chen, Shi‐Bing Su
Software Mentions: 1
Published: almost 12 years ago

10.3389/fphar.2019.01592

A Novel Approach for Drug-Target Interactions Prediction Based on Multimodal Deep Autoencoder
Cited by: 20
Author(s): Huiqing Wang, Jingjing Wang, Chunlin Dong, Yuanyuan Lian, Dan Liú, Zhiliang Yan
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13321-016-0128-4

DASPfind: new efficient method to predict drug–target interactions
Cited by: 73
Author(s): Wail Ba-Alawi, Othman Soufan, Magbubah Essack, Panos Kalnis, Vladimir B. Bajic
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12859-016-0890-3

A multiple kernel learning algorithm for drug-target interaction prediction
Cited by: 144
Author(s): André Nascimento, Ricardo B. C. Prudêncio, Ivan G. Costa
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-08079-7

Screening drug-target interactions with positive-unlabeled learning
Cited by: 32
Author(s): Lihong Peng, Wen Zhu, Bo Liao, Dengke Yu, Min Chen, Yi Chen, Jialiang Yang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-45497-1

Accommodation, slip inversion, and fault segmentation in a province-scale shear zone from high-resolution, densely spaced wide-aperture seismic profiling, Centennial Valley, MT, USA
Cited by: 6
Author(s): Pier Paolo Bruno, Claudio Berti, Frank J. Pazzaglia
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-89404-z

A novel thermostable beetle luciferase based cytotoxicity assay
Cited by: 1
Author(s): Sunju Choi, Hittu Matta, Ramakrishnan Gopalakrishnan, Venkatesh Natarajan, Songjie Gong, Alberto Jeronimo, Wei‐Ting Kuo, Bryant Bravo, Preet M. Chaudhary
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2105-13-S9-S7

DTome: a web-based tool for drug-target interactome construction
Cited by: 27
Author(s): Jingjing Sun, Yonghui Wu, Hua Xu, Zhongming Zhao
Software Mentions: 1
Published: over 12 years ago

10.3390/ijms22031392

SSnet: A Deep Learning Approach for Protein-Ligand Interaction Prediction
Cited by: 21
Author(s): Niraj Verma, Xingming Qu, Francesco Trozzi, Mohamed Elsaied, Nischal Karki, Peng Tao, Brian D. Zoltowski, Eric C. Larson, Elfi Kraka
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms22168993

SAG-DTA: Prediction of Drug–Target Affinity Using Self-Attention Graph Network
Cited by: 11
Author(s): Shuguang Zhang, Mingjian Jiang, Shuang Wang, Xiaofeng Wang, Zhiqiang Wei, Zhen Li
Software Mentions: 1
Published: over 3 years ago

10.1186/s12918-019-0691-1

Network-based characterization of drug-protein interaction signatures with a space-efficient approach
Cited by: 13
Author(s): Yasuo Tabei, Masaaki Kotera, Ryusuke Sawada, Yoshihiro Yamanishi
Software Mentions: 1
Published: over 5 years ago

10.1186/s12918-018-0663-x

A unified solution for different scenarios of predicting drug-target interactions via triple matrix factorization
Cited by: 18
Author(s): Jian-Yu Shi, Anqi Zhang, Shaowu Zhang, Kui-Tao Mao, Siu-Ming Yiu
Software Mentions: 1
Published: about 6 years ago

10.1186/s13040-021-00242-1

An efficient computational method for predicting drug-target interactions using weighted extreme learning machine and speed up robot features
Cited by: 4
Author(s): Jiyong An, Fei Meng, Yan Zhou
Software Mentions: 1
Published: almost 4 years ago

10.1155/2020/4516250

Ensemble Learning Prediction of Drug-Target Interactions Using GIST Descriptor Extracted from PSSM-Based Evolutionary Information
Cited by: 5
Author(s): Xin-Ke Zhan, Zhu‐Hong You, Chang-Qing Yu, Liping Li, Jie Pan
Software Mentions: 1
Published: over 4 years ago

10.1155/2015/670949

Systematic Analysis of the Associations between Adverse Drug Reactions and Pathways
Cited by: 6
Author(s): Xiaowen Chen, Yanqiu Wang, Pingping Wang, Baofeng Lian, Chunquan Li, Jingjing Wang, Xia Li, Wei Jiang
Software Mentions: 1
Published: almost 10 years ago

10.3390/molecules24162999

Drug-Target Interaction Prediction Based on Drug Fingerprint Information and Protein Sequence
Cited by: 20
Author(s): Yang Li, Yuan Huang, Zhu-Hong You, Liping Li, Zheng Wang
Software Mentions: 1
Published: over 5 years ago

Projects: pypi: Matador

Papers Mentioning Matador 39