Ecosyste.ms: Papers

10.1093/gigascience/giaa039

Biospytial: spatial graph-based computing for ecological Big Data
Cited by: 5
Author(s): Juan Manuel Escamilla Molgora, Luigi Sedda, Peter M. Atkinson
Software Mentions: 14
Published: over 4 years ago

10.1371/journal.pcbi.1008991

Memes: A motif analysis environment in R using tools from the MEME Suite
Cited by: 22
Author(s): Spencer L. Nystrom, Daniel J. McKay
Software Mentions: 12
Published: about 3 years ago

10.3390/genes10110905

MicroRNAs in Vitis vinifera cv. Chardonnay Are Differentially Expressed in Response to Diaporthe Species
Cited by: 5
Author(s): Aleš Eichmeier, Tomáš Kiss, Eliška Peňázová, Jakub Pečenka, Akila Berraf-Tebbal, Miroslav Baránek, Robert Pokluda, Jana Čechová, David Gramaje, Dariusz Grzebelus
Software Mentions: 5
Published: about 5 years ago

10.1093/gigascience/giz071

The genome assembly and annotation of yellowhorn (Xanthoceras sorbifolium Bunge)
Cited by: 35
Author(s): Liang Qiang, Huayang Li, Shouke Li, Fuling Yuan, Jiantong Sun, Qicheng Duan, Qingyun Li, Rui Zhang, Ya Lin Sang, Nian Wang, Xiangwen Hou, Ke Yang, Jian Ning Liu, Long Yang
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pmed.1003731

Menopausal hormone therapy and women’s health: An umbrella review
Cited by: 63
Author(s): Guo Qiang Zhang, Jin Liang Chen, Ying Luo, Maya B. Mathur, Panagiotis Anagnostis, Ulugbek Nurmatov, Madar Talibov, Jing Zhang, Catherine M. Hawrylowicz, Mary Ann Lumsden, Hilary Critchley, Aziz Sheikh, Bo Lundbäck, Cecilia Lässer, Hannu Kankaanranta, Siew Hwa Lee, Bright I. Nwaru
Software Mentions: 4
Published: over 3 years ago

10.1186/s13643-021-01681-x

Massage therapy in infants and children under 5 years of age: protocol for an overview of systematic reviews
Cited by: 4
Author(s): Shu‐Cheng Chen, Juan Yu, Sam Chun Sum Yuen, Jason Chun Sing Lam, Lorna Kwai Ping Suen, Wing Fai Yeung
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0134719

Differential mRNA Accumulation upon Early Arabidopsis thaliana Infection with ORMV and TMV-Cg Is Associated with Distinct Endogenous Small RNAs Level
Cited by: 14
Author(s): Diego Zavallo, Humberto Julio Debat, Gabriela Conti, Carlos Augusto Manacorda, Marcelo Rodríguez, Sebastián Asurmendi
Software Mentions: 3
Published: over 9 years ago

10.1186/s13148-017-0336-4

Interaction between prenatal pesticide exposure and a common polymorphism in the PON1 gene on DNA methylation in genes associated with cardio-metabolic disease risk—an exploratory study
Cited by: 28
Author(s): Ken Declerck, Sylvie Remy, Christine Wohlfahrt-Veje, Katharina M. Main, Guy Van Camp, Greet Schoeters, Wim Vanden Berghe, Helle Raun Andersen
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0254191

What are the effects of teaching Evidence-Based Health Care (EBHC) at different levels of health professions education? An updated overview of systematic reviews
Cited by: 13
Author(s): Małgorzata M Bała, Tina Poklepović Peričić, J. Zaja̧c, Anke Rohwer, Jitka Klugarová, Maritta Välimäki, Tella Lantta, Luca Pingani, Miloslav Klugar, Mike Clarke, Taryn Young
Software Mentions: 3
Published: over 3 years ago

10.1093/gbe/evv186

Whole Genome Sequencing of the Asian Arowana (<i>Scleropages formosus</i>) Provides Insights into the Evolution of Ray-Finned Fishes
Cited by: 38
Author(s): Christopher M. Austin, Mun Hua Tan, Larry Croft, Michael P. Hammer, Han Ming Gan
Software Mentions: 3
Published: about 9 years ago

10.3389/fmicb.2016.01407

Biostimulation of Indigenous Microbial Community for Bioremediation of Petroleum Refinery Sludge
Cited by: 106
Author(s): Jayeeta Sarkar, Sufia K. Kazy, Abhishek Gupta, Avishek Dutta, Balaram Mohapatra, Ajoy Roy, Paramita Bera, Adinpunya Mitra, Pinaki Sar
Software Mentions: 3
Published: about 8 years ago

10.3389/fpsyg.2020.01683

Mindfulness, Compassion, and Self-Compassion Among Health Care Professionals: What's New? A Systematic Review
Cited by: 90
Author(s): Ciro Conversano, Rebecca Ciacchini, Graziella Orrù, Mariagrazia Di Giuseppe, Angelo Gemignani, Andrea Poli
Software Mentions: 3
Published: over 4 years ago

10.1186/s13643-020-01465-9

The association between analgesic drug use in pregnancy and neurodevelopmental disorders: protocol for an umbrella review
Cited by: 3
Author(s): Janell Kwok, Hildigunnur Anna Hall, Aja Louise Murray, Bonnie Auyeung
Software Mentions: 3
Published: about 4 years ago

10.3390/nu13093227

Parent Involvement in Diet or Physical Activity Interventions to Treat or Prevent Childhood Obesity: An Umbrella Review
Cited by: 17
Author(s): Emily J. Tomayko, Alison Tovar, Nurgül Fitzgerald, Carol Howe, Melanie Hingle, Michael P. Murphy, Henna Muzaffar, Scott B. Going, Laura Hubbs‐Tait
Software Mentions: 2
Published: about 3 years ago

10.1186/s12864-017-3505-0

Improved annotation with de novo transcriptome assembly in four social amoeba species
Cited by: 6
Author(s): Reema Singh, Hajara M. Lawal, Christina Schilde, Gernot Glöckner, Geoffrey J. Barton, Pauline Schaap, Christian Callebaut
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12904-021-00782-7

Evidence on the economic value of end-of-life and palliative care interventions: a narrative review of reviews
Cited by: 14
Author(s): Xhyljeta Luta, Baptiste Ottino, Peter Hall, Joanna Bowden, Bee Wee, Joanne Droney, Julia Riley, Joachim Marti
Software Mentions: 2
Published: over 3 years ago

10.1136/bmjpo-2020-000724

Evidence that informs feeding practices in very low birthweight and very preterm infants in sub-Saharan Africa: an overview of systematic reviews
Cited by: 5
Author(s): Abimbola Akindolire, Alison Talbert, Ian Sinha, Nicholas D. Embleton, Stephen Allen
Software Mentions: 2
Published: over 4 years ago

10.1097/MD.0000000000017712

Association of hospital and surgeon volume with mortality following major surgical procedures
Cited by: 15
Author(s): Hiroshi Hoshijima, Zen’ichiro Wajima, Hiroshi Nagasaka, Toshiya Shiga
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2021.626774

Genomic Diversity and Virulence Potential of ESBL- and AmpC-β-Lactamase-Producing Escherichia coli Strains From Healthy Food Animals Across Europe
Cited by: 26
Author(s): Christa Ewers, Anno de Jong, Ellen Prenger‐Berninghoff, Farid El Garch, Ursula Leidner, Sumeet K. Tiwari, Torsten Semmler
Software Mentions: 2
Published: over 3 years ago

10.3389/fnut.2021.642509

Associations of Nutritional, Lifestyle, and Metabolic Factors With Non-alcoholic Fatty Liver Disease: An Umbrella Review With More Than 380,000 Participants
Cited by: 3
Author(s): Yang Xia, Qi‐Jun Wu, Huixu Dai, Jia-Le Lv, Yashu Liu, Hui Sun, Yuting Jiang, Qing Chang, Kaijun Niu, Yuhong Zhao
Software Mentions: 2
Published: about 3 years ago

10.3389/fneur.2019.01063

The Role of Decompressive Craniectomy in the Context of Severe Traumatic Brain Injury: Summary of Results and Analysis of the Confidence Level of Conclusions From Systematic Reviews and Meta-Analyses
Cited by: 9
Author(s): Andrés M. Rubiano, Nancy Carney, Aamir Hameed Khan, Mario Ammirati
Software Mentions: 1
Published: about 5 years ago

10.3389/fpubh.2020.550753

Association Between Folate and Health Outcomes: An Umbrella Review of Meta-Analyses
Cited by: 12
Author(s): Yacong Bo, Yongjian Zhu, Yuchang Tao, Xue Li, Desheng Zhai, Yongjun Bu, Zhongxiao Wan, Ling Wang, Yuming Wang, Zengli Yu
Software Mentions: 1
Published: almost 4 years ago

10.1155/2020/7091039

Statement to an Insufficient Systematic Review on <i>Viscum album</i> L. Therapy
Cited by: 11
Author(s): Harald Matthes, Anja Thronicke, Ralf‐Dieter Hofheinz, Erik W. Baars, David Martin, Roman Huber, Thomas Breitkreuz, Gil Bar-Sela, Daniel Galun, Friedemann Schad
Software Mentions: 1
Published: almost 5 years ago

10.1111/cogs.12407

Can Infinitival <i>to</i> Omissions and Provisions Be Primed? An Experimental Investigation Into the Role of Constructional Competition in Infinitival <i>to</i> Omission Errors
Cited by: 7
Author(s): Minna Kirjavainen, Elena Lieven, Anna L. Theakston
Software Mentions: 1
Published: about 8 years ago

10.1007/s00103-021-03309-w

Wissen für gesunde Lebenswelten: Eine Datenbank zum Praxistransfer von Erkenntnissen aus systematischen Übersichtsarbeiten
Cited by: 1
Author(s): Adrienne Alayli, Christine Witte, Wolfgang Haß, Hajo Zeeb, Thomas L Heise, Jens Hupfeld
Software Mentions: 1
Published: over 3 years ago

10.1136/bmjopen-2019-032275

Health outcomes associated with Zika virus infection in humans: a systematic review of systematic reviews
Cited by: 10
Author(s): Raphael Ximenes, Lauren Ramsay, Rafael N Miranda, Shaun K. Morris, Kellie Murphy, Beate Sander
Software Mentions: 1
Published: about 5 years ago

10.1016/j.reprotox.2020.09.010

Integrating biokinetics and in vitro studies to evaluate developmental neurotoxicity induced by chlorpyrifos in human iPSC-derived neural stem cells undergoing differentiation towards neuronal and glial cells
Cited by: 13
Author(s): Emma Di Consiglio, Francesca Pistollato, Emilio Mendoza-de Gyves, Anna Bal‐Price, Emanuela Testai
Software Mentions: 1
Published: almost 4 years ago

10.1186/s41073-019-0064-8

SANRA—a scale for the quality assessment of narrative review articles
Cited by: 536
Author(s): Christopher Baethge, Sandra Goldbeck‐Wood, Stephan Mertens
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-53138-w

The first comprehensive phylogenetic and biochemical analysis of NADH diphosphatases reveals that the enzyme from Tuber melanosporum is highly active towards NAD+
Cited by: 1
Author(s): Antonio Ginés García-Saura, Rubén Zapata-Pérez, Ana Belén Martínez-Moñino, José Francisco Hidalgo, Asunción Morte, Manuela Pérez‐Gilabert, Álvaro Sánchez‐Ferrer
Software Mentions: 1
Published: about 5 years ago

10.1186/1751-0473-3-5

Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data
Cited by: 3
Author(s): Nicolas J. Parker, Andrew G. Parker
Software Mentions: 1
Published: over 16 years ago

10.1186/s13643-019-0977-9

Screening for periodontal diseases by non-dental health professionals: a protocol for a systematic review and overview of reviews
Cited by: 5
Author(s): Birgit Teufer, Isolde Sommer, Barbara Nußbaumer-Streit, Viktoria Titscher, Corinna Bruckmann, Irma Klerings, Gerald Gartlehner
Software Mentions: 1
Published: over 5 years ago

10.1186/s12912-016-0200-4

Predictors of burnout, work engagement and nurse reported job outcomes and quality of care: a mixed method study
Cited by: 122
Author(s): Peter Van Bogaert, Lieve Peremans, Danny Van heusden, Martijn Verspuy, Veronika Kurečková, Zoë Van de Cruys, Erik Franck
Software Mentions: 1
Published: almost 8 years ago

10.1007/s00705-021-05178-9

A proposed division of the family Picornaviridae into subfamilies based on phylogenetic relationships and functional genomic organization
Cited by: 10
Author(s): Roland Zell, Nick J. Knowles, Peter Simmonds
Software Mentions: 1
Published: over 3 years ago

10.1186/s13643-021-01758-7

Safety and efficacy of different antibiotic regimens in patients with ocular toxoplasmosis: systematic review and meta-analysis
Cited by: 8
Author(s): John Edwin Feliciano-Alfonso, Juliana Muñoz-Ortíz, María Alejandra Marín-Noriega, Andrés Vargas-Villanueva, Laura Triviño-Blanco, Natalia Carvajal-Saiz, Alejandra de-la-Torre
Software Mentions: 1
Published: over 3 years ago

10.18332/tpc/112596

Association of smokeless tobacco with oral cancer: A review of systematic reviews
Cited by: 16
Author(s): Smita Asthana, Parul Vohra, Satyanarayana Labani
Software Mentions: 1
Published: about 5 years ago

10.2196/25847

Evidence on Digital Mental Health Interventions for Adolescents and Young People: Systematic Overview
Cited by: 96
Author(s): Susanna Lehtimaki, Jana Martic, Brian Wahl, Katherine T. Foster, Nina Schwalbe
Software Mentions: 1
Published: over 3 years ago

10.3390/ijerph17082892

Predictors of Health Insurance Enrollment among HIV Positive Pregnant Women in Kenya: Potential for Adverse Selection and Implications for HIV Treatment and Prevention
Cited by: 4
Author(s): Lawrence Were, Joseph W. Hogan, Omar Galárraga, Richard G. Wamai
Software Mentions: 1
Published: over 4 years ago

10.2196/27275

Impact of Big Data Analytics on People’s Health: Overview of Systematic Reviews and Recommendations for Future Studies
Cited by: 27
Author(s): Israel Júnior Borges do Nascimento, Milena Soriano Marcolino, Hebatullah Mohamed Abdulazeem, Ishanka Weerasekara, Natasha Azzopardi-Muscat, Marcos André Gonçalves, David Novillo-Ortiz
Software Mentions: 1
Published: over 3 years ago

10.1155/2014/762320

Sepsis Associated Encephalopathy
Cited by: 134
Author(s): Neera Chaudhry, Ashish Duggal
Software Mentions: 1
Published: almost 11 years ago