pypi: SQLAlchemy | Projects | Ecosyste.ms: Papers

10.1038/s41597-020-00638-4

AiiDA 1.0, a scalable computational infrastructure for automated reproducible workflows and data provenance
Cited by: 117
Author(s): Sebastiaan P. Huber, Spyros Zoupanos, Martin Uhrin, Leopold Talirz, Leonid Kahle, Rico Häuselmann, Dominik Gresch, Tiziano Müller, Aliaksandr V. Yakutovich, Casper Welzel Andersen, Francisco Ramirez, Carl S. Adorf, Fernando Gargiulo, Snehal Kumbhar, Elsa Passaro, Conrad Johnston, Andrius Merkys, Andrea Cepellotti, Nicolas Mounet, Nicola Marzari, Boris Kozinsky, Giovanni Pizzi
Software Mentions: 9
Published: over 4 years ago

10.1109/JTEHM.2020.2989768

Integrated Development Environment for EEG-Driven Cognitive-Neuropsychological Research
Cited by: 6
Author(s): Shoham Jacobsen, Oded Meiron, David Yoel Salomon, Nir Kraizler, Hagai Factor, Efraim Jaul, Elishai Ezra Tsur
Software Mentions: 7
Published: almost 5 years ago

10.1016/j.mec.2019.e00089

Impact framework: A python package for writing data analysis workflows to interpret microbial physiology
Cited by: 4
Author(s): Naveen Venayak, Kaushik Raj, Radhakrishnan Mahadevan
Software Mentions: 7
Published: about 5 years ago

10.3390/s20051473

Connected Bike-smart IoT-based Cycling Training Solution
Cited by: 4
Author(s): George Catargiu, Eva‐Henrietta Dulf, Liviu Miclea
Software Mentions: 7
Published: almost 5 years ago

10.3389/fninf.2021.678403

FlywheelTools: Data Curation and Manipulation on the Flywheel Platform
Cited by: 5
Author(s): Tinashe M. Tapera, Matthew Cieslak, Max Bertolero, Azeez Adebimpe, Geoffrey K. Aguirre, Ellyn R. Butler, Philip A. Cook, Diego Davila, Mark A. Elliott, Sophia Linguiti, Kristin Murtha, William Tackett, John A. Detre, Theodore D. Satterthwaite
Software Mentions: 6
Published: over 3 years ago

10.1186/1471-2105-15-324

Polyphony: superposition independent methods for ensemble-based drug discovery
Cited by: 8
Author(s): William R. Pitt, Rinaldo W. Montalvão, Tom L. Blundell
Software Mentions: 6
Published: about 10 years ago

10.21105/joss.02410

Viime: Visualization and Integration of Metabolomics Experiments
Cited by: 6
Author(s): Roni Choudhury, Jon Beezley, Brandon Davis, Jared Tomeck, Samuel Gratzl, Lilian Golzarri‐Arroyo, Jun Wan, Daniel Raftery, Jeff Baumes, Thomas M. O’Connell
Software Mentions: 6
Published: about 4 years ago

10.1186/s12859-015-0729-3

htsint: a Python library for sequencing pipelines that combines data through gene set generation
Cited by: 1
Author(s): Adam Richards, Anthony Herrel, Camille Bonneaud
Software Mentions: 6
Published: about 9 years ago

10.3389/fninf.2014.00055

NeuronDepot: keeping your colleagues in sync by combining modern cloud storage services, the local file system, and simple web applications
Cited by: 3
Author(s): Philipp L. Rautenberg, Ajayrama Kumaraswamy, Álvaro Tejero-Cantero, Christoph Doblander, Mohammad Reza Norouzian, Kazuki Kai, Hans‐Arno Jacobsen, Hiroyuki Ai, Thomas Wachtler, Hidetoshi Ikeno
Software Mentions: 5
Published: over 10 years ago

10.1155/2014/748750

The Preventable Risk Integrated ModEl and Its Use to Estimate the Health Impact of Public Health Policy Scenarios
Cited by: 45
Author(s): Peter Scarborough, Richard Harrington, Anja Mizdrak, Lijuan Zhou, Aiden Doherty
Software Mentions: 5
Published: almost 11 years ago

10.1371/journal.pcbi.1008889

Building blocks and blueprints for bacterial autolysins
Cited by: 9
Author(s): Spencer J. Mitchell, Deeptak Verma, Karl E. Griswold, Chris Bailey‐Kellogg
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0024982

SNPpy - Database Management for SNP Data from Genome Wide Association Studies
Cited by: 10
Author(s): Faheem Mitha, Herodotos Herodotou, Nedyalko Borisov, Chen Jiang, Josh Yoder, Kouros Owzar
Software Mentions: 4
Published: about 13 years ago

10.3390/ijerph17145243

Translator Exposure APIs: Open Access to Data on Airborne Pollutant Exposures, Roadway Exposures, and Socio-Environmental Exposures and Use Case Application
Cited by: 4
Author(s): Alejandro Valencia, Lisa Stillwell, Stephen J. Appold, Saravanan Arunachalam, Steven J. Cox, Hao Xu, Charles Schmitt, Shepherd H. Schurman, Stavros Garantziotis, William Xue, Stanley C. Ahalt, Karamarie Fecho
Software Mentions: 4
Published: over 4 years ago

10.3389/fninf.2014.00036

Integrating neuroinformatics tools in TheVirtualBrain
Cited by: 21
Author(s): Michael Woodman, Laurent Pézard, Lia Domide, S. A. Knock, Paula Sanz-Leon, Jochen Mersmann, Anthony R. McIntosh, Viktor K. Jirsa
Software Mentions: 4
Published: over 10 years ago

10.1186/1751-0473-3-6

The Multiscale Systems Immunology project: software for cell-based immunological simulation
Cited by: 20
Author(s): Faheem Mitha, Timothy A. Lucas, Feng Feng, Thomas B. Kepler, CP Chan
Software Mentions: 4
Published: over 16 years ago

10.1186/s13104-015-1622-x

WeBIAS: a web server for publishing bioinformatics applications
Cited by: 3
Author(s): Paweł Daniluk, Bartek Wilczyński, Bogdan Lesyng
Software Mentions: 4
Published: about 9 years ago

10.1016/j.ijgfs.2020.100249

Capturing diversity and cultural drivers of food choice in eastern India
Cited by: 17
Author(s): Arindam Samaddar, Rosa Paula Cuevas, Marie Claire Custodio, Jhoanne Ynion, Anindita Ray, Swati Mohanty, Matty Demont
Software Mentions: 3
Published: about 4 years ago

10.1186/1746-4811-6-10

SSHscreen and SSHdb, generic software for microarray based gene discovery: application to the stress response in cowpea
Cited by: 15
Author(s): Nanette Coetzer, Inge Gazendam, D. Oelofse, David Kenneth Berger
Software Mentions: 3
Published: over 14 years ago

10.1128/mBio.02401-20

A Mycobacterial Systems Resource for the Research Community
Cited by: 20
Author(s): Julius Judd, Jill G. Canestrari, Ryan R. Clark, Aviva Joseph, Pascal Lapierre, Erica Lasek‐Nesselquist, Mushtaq Ahmad Mir, Michael J. Palumbo, Carol Smith, Michael E. Stone, Ashutosh Upadhyay‬, Samantha E. Wirth, Rebekah M. Dedrick, Christopher G Meier, Daniel A. Russell, Alexander Dills, Edward S. Dove, Jemila C. Kester, Ian D. Wolf, Junhao Zhu, Eric Rubin, Sarah M. Fortune, Graham F. Hatfull, Todd A. Gray, Joseph T. Wade, Keith M. Derbyshire
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pcbi.1008475

IOCBIO Kinetics: An open-source software solution for analysis of data traces
Cited by: 2
Author(s): Marko Vendelin, Martin Laasmaa, Mari Kalda, Jelena Branovets, Niina Karro, Karina Barsunova, Rikke Birkedal
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0257520

Replicating prediction algorithms for hospitalization and corticosteroid use in patients with inflammatory bowel disease
Cited by: 3
Author(s): Ryan W. Gan, Diana Sun, Amanda R. Tatro, Shirley Cohen‐Mekelburg, Wyndy L. Wiitala, Ji Zhu, Akbar K. Waljee
Software Mentions: 3
Published: over 3 years ago

10.1093/bioinformatics/btaa512

MetaSanity: an integrated microbial genome evaluation and annotation pipeline
Cited by: 20
Author(s): Christopher J. Neely, Elaina D. Graham, Benjamin J. Tully
Software Mentions: 3
Published: over 4 years ago

10.1002/advs.201901957

Toward “On‐Demand” Materials Synthesis and Scientific Discovery through Intelligent Robots
Cited by: 38
Author(s): Jiagen Li, Yuxiao Tu, Rulin Liu, Yu Lu, Xi Zhu
Software Mentions: 3
Published: almost 5 years ago

10.1107/S1600577518010056

APS <i>Data Management System</i>
Cited by: 13
Author(s): Siniša Veseli, Nina Schwarz, Collin Schmitz
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2105-13-240

The Ruby UCSC API: accessing the UCSC genome database using Ruby
Cited by: 3
Author(s): Hiroyuki Mishima, Jan Aerts, Toshiaki Katayama, Raoul Jean Pierre Bonnal, Koh-ichiro Yoshiura
Software Mentions: 2
Published: over 12 years ago

10.1186/s12911-017-0437-1

Clinical records anonymisation and text extraction (CRATE): an open-source software system
Cited by: 37
Author(s): Rudolf N. Cardinal
Software Mentions: 2
Published: over 7 years ago

10.1007/s00778-019-00552-1

Snorkel: rapid training data creation with weak supervision
Cited by: 95
Author(s): Alexander Ratner, Stephen H. Bach, Henry R. Ehrenberg, Jason Fries, Sen Wu, Christopher Ré
Software Mentions: 2
Published: over 5 years ago

10.1186/1746-4811-7-31

Maize microarray annotation database
Cited by: 9
Author(s): Nanette Coetzer, Alexander Andrew Myburg, David Kenneth Berger
Software Mentions: 2
Published: about 13 years ago

10.1016/j.dib.2021.107148

Survey data on heterogeneity in consumers’ food choice in eastern India
Cited by: 0
Author(s): Jhoanne Ynion, Marie Claire Custodio, Arindam Samaddar, Swati Mohanty, Rosa Paula Cuevas, Anindita Ray, Matty Demont
Software Mentions: 2
Published: over 3 years ago

10.1093/database/bax041

TIBLE: a web-based, freely accessible resource for small-molecule binding data for mycobacterial species
Cited by: 5
Author(s): Sony Malhotra, Grace Mugumbate, Tom L. Blundell, Alícia P. Higueruelo
Software Mentions: 2
Published: almost 8 years ago

10.1093/database/bax073

An online analytical processing multi-dimensional data warehouse for malaria data
Cited by: 2
Author(s): Samsul Arifin, Gregory R. Madey, Alexander Vyushkov, Benoit Raybaud, Thomas R. Burkot, Frank H. Collins
Software Mentions: 2
Published: almost 8 years ago

10.1093/database/bav056

Inconsistencies in the red blood cell membrane proteome analysis: generation of a database for research and diagnostic applications
Cited by: 24
Author(s): Tamás Hegedűs, Pururawa Mayank Chaubey, György Várady, Edit Szabó, Hajnalka Sarankó, Lia Hofstetter, Bernd Roschitzki, Bruno Stieger, Balázs Sarkadi
Software Mentions: 2
Published: over 9 years ago

10.5808/GI.2020.18.2.e21

SciBabel: a system for crowd-sourced validation of automatic translations of scientific texts
Cited by: 0
Author(s): Felipe Soares, Rozane Rodrigues Rebechi, Mark Stevenson
Software Mentions: 2
Published: over 4 years ago

10.3390/s21165325

Cyber Risks Prediction and Analysis in Medical Emergency Equipment for Situational Awareness
Cited by: 3
Author(s): George W. Burke, Neetesh Saxena
Software Mentions: 2
Published: over 3 years ago

10.1002/acm2.13308

Automated data abstraction for quality surveillance and outcome assessment in radiation oncology
Cited by: 5
Author(s): Rishabh Kapoor, William C. Sleeman, Joseph J. Nalluri, Patricia A. Turner, Priyankar Bose, Andrii Cherevko, Sriram Srinivasan, Khajamoinuddin Syed, Preetam Ghosh, Michael P. Hagan, Jatinder Palta
Software Mentions: 1
Published: over 3 years ago

10.1093/jamiaopen/ooab048

FIBER: enabling flexible retrieval of electronic health records data for clinical predictive modeling
Cited by: 1
Author(s): Suparno Datta, Jan Philipp Sachs, Harry FreitasDa Cruz, Tom Martensen, Philipp Bode, Ariane Morassi Sasso, Benjamin S. Glicksberg, Erwin P. Böttinger
Software Mentions: 1
Published: over 3 years ago

10.1093/gigascience/giab030

Driftage: a multi-agent system framework for concept drift detection
Cited by: 6
Author(s): Diogo Munaro Vieira, Chrystinne Oliveira Fernandes, Carlos José Pereira de Lucena, Sérgio Lifschitz
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2164-16-S12-S8

Precise genotyping and recombination detection of Enterovirus
Cited by: 9
Author(s): Ching‐Yi Lin, Yu Bin Wang, Shu Hwa Chen, Chao A. Hsiung, Chung Yen Lin
Software Mentions: 1
Published: about 9 years ago

Projects: pypi: SQLAlchemy

Papers Mentioning SQLAlchemy 38