pypi: nilearn | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0254062

PHOTONAI—A Python API for rapid machine learning model development
Cited by: 8
Author(s): Ramona Leenings, Nils R. Winter, Lucas Plagwitz, Vincent Holstein, Jan Ernsting, Kelvin Sarink, L. Fisch, Jakob Steenweg, Leon Kleine-Vennekate, Julian Gebker, Daniel Emden, Dominik Grotegerd, Nils Opel, Benjamin Risse, Xiaoyi Jiang, Udo Dannlowski, Tim Hahn
Software Mentions: 15
Published: over 3 years ago

10.1186/s13742-016-0147-0

2015 Brainhack Proceedings
Cited by: 6
Author(s): R. Cameron Craddock, Pierre Bellec, Daniel S. Margules, B. Nolan Nichols, Jörg P. Pfannmöller, AmanPreet Badhwar, David Kennedy, Jean‐Baptiste Poline, Roberto Toro, Ben Cipollini, Ariel Rokem, Daniel J. Clark, Krzysztof J. Gorgolewski, Daniel J. Clark, Samir Das, Cécile Madjar, Ayan Sengupta, Zia Mohades, Sébastien Déry, Weiran Deng, Eric Earl, Damion V. Demeter, Kate Mills, Glad Mihai, Luka Ružić, Nick Ketz, Andrew E. Reineberg, Marianne C. Reddan, Anne-Lise Goddings, Javier Gonzalez‐Castillo, Caroline Froehlich, Gil Dekel, Daniel S. Margulies, Ben D. Fulcher, Tristan Glatard, Reza Adalat, Natacha Beck, R. Bernard, Najmeh Khalili-Mahani, Pierre Rioux, Marc-Étienne Rousseau, Alan C. Evans, Yaroslav Halchenko, Matteo Visconti di Oleggio Castello, Raúl Hernández-Pérez, Edgar Abarca Morales, Laura V. Cuaya, Kaori Ito, Sook‐Lei Liew, Hans J. Johnson, Erik Kan, Julia Anglin, Michael R. Borich, Neda Jahanshad, Paul Thompson, Marcel Falkiewicz, Julia M. Huntenburg, David O’Connor, Michael P. Milham, Ramon Fraga Pereira, Anibal Sólon Heinsfeld, Alexandre R. Franco, Augusto Buchweitz, Felipe Meneguzzi, Rickson C. Mesquita, Luis C. T. Herrera, Daniela Dentico, Vanessa Sochat, Julio E. Villalon‐Reina, Eleftherios Garyfallidis
Software Mentions: 14
Published: about 8 years ago

10.3389/fninf.2014.00014

Machine learning for neuroimaging with scikit-learn
Cited by: 1,186
Author(s): A. Alexandre, Fabián Pedregosa, Michael Eickenberg, Philippe Gervais, Andreas Mueller, Jean Kossaifi, Alexandre Gramfort, Bertrand Thirion, Gaël Varoquaux
Software Mentions: 8
Published: almost 11 years ago

10.3389/fnins.2018.00727

Teaching Computational Reproducibility for Neuroimaging
Cited by: 15
Author(s): K. Jarrod Millman, Matthew Brett, Ross Barnowski, Jean‐Baptiste Poline
Software Mentions: 7
Published: about 6 years ago

10.1186/s13550-020-00671-9

18F-FDG PET and DCE kinetic modeling and their correlations in primary NSCLC: first voxel-wise correlative analysis of human simultaneous [18F]FDG PET-MRI data
Cited by: 6
Author(s): Florent L. Besson, Brice Fernandez, Sylvain Faure, Olaf Mercier, Andrei Seferian, Xavier Mignard, Sacha Mussot, C. Le Péchoux, Caroline Caramella, Angela Botticella, Antonin Lévy, Florence Parent, Sophie Bulifon, David Montani, Délphine Mitilian, Élie Fadel, David Planchard, Benjamin Besse, Maria-Rosa Ghigna-Bellinzoni, Claude Comtat, Vincent Lebon, Emmanuel Durand
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pone.0223141

Attenuation correction using 3D deep convolutional neural network for brain 18F-FDG PET/MR: Comparison with Atlas, ZTE and CT based attenuation correction
Cited by: 36
Author(s): Paul Blanc-Durand, Maya Khalifé, B. Sgard, Sandeep Kaushik, Marine Soret, Tiss Amal, Georges El Fakhri, Marie‐Odile Habert, Florian Wiesinger, Aurélie Kas
Software Mentions: 7
Published: about 5 years ago

10.3389/fnins.2021.630747

Voxel-Wise Feature Selection Method for CNN Binary Classification of Neuroimaging Data
Cited by: 2
Author(s): D Messina, Pasquale Borrelli, Paolo Russo, Marco Salvatore, Marco Aiello
Software Mentions: 7
Published: over 3 years ago

10.1126/sciadv.abf7129

Endogenous variation in ventromedial prefrontal cortex state dynamics during naturalistic viewing reflects affective experience
Cited by: 55
Author(s): Luke J. Chang, Eshin Jolly, Jin Hyun Cheong, Kristina M. Rapuano, Nathan Greenstein, Pin-Hao A. Chen, Jeremy R. Manning
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pcbi.1007549

BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis
Cited by: 41
Author(s): Manoj Kumar, Cameron T. Ellis, Qingming Lu, Hejia Zhang, Mihai Capotă, Theodore L. Willke, Peter J. Ramadge, Nicholas B. Turk‐Browne, Kenneth A. Norman
Software Mentions: 6
Published: almost 5 years ago

10.3389/fninf.2021.689675

Clinica: An Open-Source Software Platform for Reproducible Clinical Neuroscience Studies
Cited by: 47
Author(s): Alexandre Routier, Ninon Burgos, Mauricio Díaz, Michael Bacci, Simona Bottani, Omar El-Rifai, Sabrina Fontanella, Pietro Gori, Jérémy Guillon, A. Guyot, Ravi Hassanaly, Thomas Jacquemont, Pascal Lu, Arnaud Marcoux, T. Moreau, Jorge Samper‐Gonzàlez, Marc Teichmann, Elina Thibeau–Sutre, Ghislain Vaillant, Junhao Wen, Adam Wild, Marie‐Odile Habert, Stanley Durrleman, Olivier Colliot
Software Mentions: 6
Published: over 3 years ago

10.3389/fninf.2020.563669

NeuroRA: A Python Toolbox of Representational Analysis From Multi-Modal Neural Data
Cited by: 21
Author(s): Zitong Lu, Yixuan Ku
Software Mentions: 5
Published: almost 4 years ago

10.1177/1362361320969258

Difference in default mode network subsystems in autism across childhood and adolescence
Cited by: 12
Author(s): Joe Bathelt, Hilde M. Geurts
Software Mentions: 4
Published: almost 4 years ago

10.1038/sdata.2016.44

The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments
Cited by: 931
Author(s): Krzysztof J. Gorgolewski, Tibor Auer, Vince D. Calhoun, R. Cameron Craddock, Samir Das, Eugene P. Duff, Guillaume Flandin, Samik Ghosh, Tristan Glatard, Yaroslav O. Halchenko, Daniel A. Handwerker, Michael Hanke, David B. Keator, Xiangrui Li, Zachary Michael, Camille Maumet, B. Nolan Nichols, Thomas E. Nichols, John Pellman, Jean‐Baptiste Poline, Ariel Rokem, Gunnar Schaefer, Vanessa Sochat, William Triplett, Jessica A. Turner, Gaël Varoquaux, Russell A. Poldrack
Software Mentions: 4
Published: over 8 years ago

10.3389/frai.2020.00023

PECLIDES Neuro: A Personalisable Clinical Decision Support System for Neurological Diseases
Cited by: 12
Author(s): Tamara Müller, Píetro Lió
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0195798

Automatic lesion detection and segmentation of 18F-FET PET in gliomas: A full 3D U-Net convolutional neural network study
Cited by: 105
Author(s): Paul Blanc-Durand, Axel Van Der Gucht, Niklaus Schaefer, Emmanuel Itti, John O. Prior
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-71535-4

Sylvian fissure development is linked to differential genetic expression in the pre-folded brain
Cited by: 10
Author(s): Arka N. Mallela, Hansen Deng, Alyssa K. Brisbin, Alan Bush, Ezequiel Goldschmidt
Software Mentions: 3
Published: about 4 years ago

10.1002/hbm.25086

Attentional reorientation along the meridians of the visual field: Are there different neural mechanisms at play?
Cited by: 5
Author(s): Simon R. Steinkamp, Simone Vossel, Gereon R. Fink, Ralph Weidner
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1009267

Unveiling functions of the visual cortex using task-specific deep neural networks
Cited by: 18
Author(s): Kshitij Dwivedi, Michael Bonner, Radoslaw Martin Cichy, Gemma Roig
Software Mentions: 3
Published: over 3 years ago

10.1002/hbm.25589

Dyconnmap: Dynamic connectome mapping—A neuroimaging python module
Cited by: 6
Author(s): Avraam D. Marimpis, Stavros I. Dimitriadis, Rainer Goebel
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-020-71662-y

Choosing to view morbid information involves reward circuitry
Cited by: 20
Author(s): Suzanne Oosterwijk, Lukas Snoek, Jurriaan Tekoppele, Lara H. Engelbert, H. Steven Scholte
Software Mentions: 3
Published: about 4 years ago

10.1016/j.dcn.2019.100630

BOLD signal variability and complexity in children and adolescents with and without autism spectrum disorder
Cited by: 35
Author(s): Amanda Easson, Anthony R. McIntosh
Software Mentions: 3
Published: over 5 years ago

10.1523/ENEURO.0321-18.2019

Context-Based Facilitation in Visual Word Recognition: Evidence for Visual and Lexical But Not Pre-Lexical Contributions<sup />
Cited by: 6
Author(s): Susanne Eisenhauer, Christian J. Fiebach, Benjamin Gagl
Software Mentions: 2
Published: over 5 years ago

10.1093/braincomms/fcab110

Generative lesion pattern decomposition of cognitive impairment after stroke
Cited by: 18
Author(s): Anna K. Bonkhoff, Jae‐Sung Lim, Hee‐Joon Bae, Nick A. Weaver, Hugo J. Kuijf, J. Matthijs Biesbroek, Natalia S. Rost, Danilo Bzdok
Software Mentions: 2
Published: over 3 years ago

10.1186/s13229-020-0316-y

Age-variant and age-invariant features of functional brain organization in middle-aged and older autistic adults
Cited by: 13
Author(s): Joe Bathelt, P. Cédric M. P. Koolschijn, Hilde M. Geurts
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0199379

Voxel-based 18F-FET PET segmentation and automatic clustering of tumor voxels: A significant association with IDH1 mutation status and survival in patients with gliomas
Cited by: 18
Author(s): Paul Blanc-Durand, Axel Van Der Gucht, Antoine Verger, Karl‐Josef Langen, Vincent Dunet, Jocelyne Bloch, Jean‐Philippe Brouland, Marie Nicod Lalonde, Niklaus Schaefer, John O. Prior
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0232296

Interpretable brain age prediction using linear latent variable models of functional connectivity
Cited by: 10
Author(s): Ricardo Pio Monti, Alex Gibberd, Sandipan Roy, Matthew Nunes, Romy Lorenz, Robert Leech, Takeshi Ogawa, Motoaki Kawanabe, Aapo Hyvärinen
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0181152

Cerebral 18F-FDG PET in macrophagic myofasciitis: An individual SVM-based approach
Cited by: 6
Author(s): Paul Blanc-Durand, Axel Van Der Gucht, Éric Guedj, Mukedaisi Abulizi, Mehdi Aoun-Sebaïti, Lionel Lerman, Antoine Verger, François‐Jérôme Authier, Emmanuel Itti
Software Mentions: 2
Published: over 7 years ago

10.1038/s42003-020-01559-z

Deep learning identifies partially overlapping subnetworks in the human social brain
Cited by: 10
Author(s): Hannah Kiesow, R. Nathan Spreng, Avram J. Holmes, M. Mallar Chakravarty, André F. Marquand, B.T. Thomas Yeo, Danilo Bzdok
Software Mentions: 2
Published: almost 4 years ago

10.3389/fnhum.2019.00462

Short-Term Classification Learning Promotes Rapid Global Improvements of Information Processing in Human Brain Functional Connectome
Cited by: 3
Author(s): Antonio Zippo, Isabella Castiglioni, Jianyi Lin, Virginia Maria Borsa, Maurizio Valente, Gabriele Biella
Software Mentions: 2
Published: almost 5 years ago

10.3389/fneur.2019.00655

Quantifying the Confidence in fMRI-Based Language Lateralisation Through Laterality Index Deconstruction
Cited by: 7
Author(s): Martin Wegrzyn, Markus Mertens, Christian G. Bien, Friedrich G. Woermann, Kirsten Labudda
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.63591

Functional specialization within the inferior parietal lobes across cognitive domains
Cited by: 49
Author(s): Ole Numssen, Danilo Bzdok, Gesa Hartwigsen
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.55335

Hippocampal and cortical mechanisms at retrieval explain variability in episodic remembering in older adults
Cited by: 32
Author(s): Alexandra N. Trelle, Valerie A. Carr, Scott A. Guerin, Monica K Thieu, Manasi Jayakumar, Wanjia Guo, Ayesha Nadiadwala, Nicole K. Corso, Madison P Hunt, Celia Litovsky, Natalie Tanner, Gayle K. Deutsch, Jeffrey D. Bernstein, Marc Harrison, Anna M. Khazenzon, Jiefeng Jiang, Sharon J. Sha, Carolyn A. Fredericks, Brian K. Rutt, Elizabeth C. Mormino, Geoffrey A. Kerchner, Anthony D. Wagner
Software Mentions: 2
Published: over 4 years ago

10.12688/f1000research.13689.2

Spatial band-pass filtering aids decoding musical genres from auditory cortex 7T fMRI
Cited by: 1
Author(s): Ayan Sengupta, Stefan Pollmann, Michael Hanke
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1005649

Decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition
Cited by: 98
Author(s): Timothy N. Rubin, Oluwasanmi Koyejo, Krzysztof J. Gorgolewski, Michael N. Jones, Russell A. Poldrack, Tal Yarkoni
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-021-82681-8

Jumping over baselines with new methods to predict activation maps from resting-state fMRI
Cited by: 2
Author(s): Eric Lacosse, Klaus Scheffler, Gabriele Lohmann, Georg Martius
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2164-16-S13-S3

Prediction of tissue-specific effects of gene knockout on apoptosis in different anatomical structures of human brain
Cited by: 8
Author(s): E. D. Petrovskiy, Olga V. Saik, Evgeny S. Tiys, Inna N. Lavrik, Н. А. Колчанов, В. А. Иванисенко
Software Mentions: 1
Published: almost 9 years ago

10.1098/rsos.200600

Suggestions for improving the visualization of magnetic resonance spectroscopy voxels and spectra
Cited by: 4
Author(s): Vuong Truong, Niall W. Duncan
Software Mentions: 1
Published: over 4 years ago

10.3389/fnhum.2020.00212

A Nexus Model of Restricted Interests in Autism Spectrum Disorder
Cited by: 9
Author(s): R. McKell Carter, Heejung Jung, Judy Reaven, Audrey Blakeley‐Smith, Gabriel S. Dichter
Software Mentions: 1
Published: over 4 years ago

Projects: pypi: nilearn

Papers Mentioning nilearn 38