Ecosyste.ms: Papers

10.3389/fmicb.2019.00240

Changes in Trophic Groups of Protists With Conversion of Rainforest Into Rubber and Oil Palm Plantations
Cited by: 38
Author(s): Garvin Schulz, Dominik Schneider, Nicole Brinkmann, Nur Edy, Rolf Daniel, Andrea Polle, Stefan Scheu, Valentyna Krashevska
Software Mentions: 16
Published: almost 6 years ago

10.7717/peerj.6127

Bacterial and archaeal spatial distribution and its environmental drivers in an extremely haloalkaline soil at the landscape scale
Cited by: 8
Author(s): Martha Adriana Martínez-Olivas, Norma G. Jiménez‐Bueno, Juan Alfredo Hernández-García, Carmine Fusaro, Marco Luna‐Guido, Yendi E. Navarro‐Noya, Luc Dendooven
Software Mentions: 9
Published: over 5 years ago

10.1038/s41416-020-0851-5

Integrated single-cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC-sensitive cell lines
Cited by: 36
Author(s): Luciane T. Kagohara, Fernando T. Zamunér, Emily F. Davis-Marcisak, Gaurav Sharma, Michael Considine, Jawara Allen, Srinivasan Yegnasubramanian, Daria A. Gaykalova, Elana J. Fertig
Software Mentions: 8
Published: over 4 years ago

10.1128/AEM.02646-18

Changes in the Active, Dead, and Dormant Microbial Community Structure across a Pleistocene Permafrost Chronosequence
Cited by: 58
Author(s): Alexander Burkert, Thomas A. Douglas, Mark P. Waldrop, Rachel Mackelprang
Software Mentions: 5
Published: over 5 years ago

10.1128/mSystems.00323-18

Gut Microbiota Has a Widespread and Modifiable Effect on Host Gene Regulation
Cited by: 62
Author(s): Allison L. Richards, Amanda L. Muehlbauer, Adnan Alazizi, Michael B. Burns, Anthony Findley, Francesco Messina, Trevor Gould, Camilla Cascardo, Roger Piqué-Regi, Ran Blekhman, Francesca Luca
Software Mentions: 5
Published: about 5 years ago

10.3389/fimmu.2019.03014

Bacterial Exposure Mediates Developmental Plasticity and Resistance to Lethal Vibrio lentus Infection in Purple Sea Urchin (Strongylocentrotus purpuratus) Larvae
Cited by: 12
Author(s): Nicholas W Schuh, Tyler J. Carrier, Catherine S. Schrankel, Adam M. Reitzel, Andreas Heyland, Jonathan P. Rast
Software Mentions: 5
Published: almost 5 years ago

10.1128/AEM.02992-18

Characterizing the Key Agents in a Disease-Suppressed Soil Managed by Reductive Soil Disinfestation
Cited by: 33
Author(s): Liang Liang Liu, Xinqi Huang, Jun Zhao, Jinbo Zhang, Zucong Cai
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2016.00565

Chitin Mixed in Potting Soil Alters Lettuce Growth, the Survival of Zoonotic Bacteria on the Leaves and Associated Rhizosphere Microbiology
Cited by: 59
Author(s): Jane Debode, Caroline De Tender, Saman Soltaninejad, Cinzia Van Malderghem, Annelies Haegeman, Inge Van der Linden, Bart Cottyn, Marc Heyndrickx, Martine Maes
Software Mentions: 5
Published: over 8 years ago

10.1128/mSphere.00194-18

Taxon-Driven Functional Shifts Associated with Storm Flow in an Urban Stream Microbial Community
Cited by: 19
Author(s): Adit Chaudhary, Imrose Kauser, Anirban Ray, Rachel Poretsky
Software Mentions: 4
Published: about 6 years ago

10.1002/ece3.5463

Impact of demography on linked selection in two outcrossing Brassicaceae species
Cited by: 9
Author(s): Tiina M. Mattila, Benjamin Laenen, Róbert Horváth, Tuomas Hämälä, Outi Savolainen, Tanja Slotte
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.639913

Comparison of Microbial Communities in Colorado Potato Beetles (Leptinotarsa decemlineata Say) Collected From Different Sources in China
Cited by: 6
Author(s): Yanxue Yu, Yuhan Wang, Hongwei Li, Xiubo Yu, Wangpeng Shi, Junfeng Zhai
Software Mentions: 4
Published: over 3 years ago

10.3390/microorganisms9081562

The Nexus between Fire and Soil Bacterial Diversity in the African Miombo Woodlands of Niassa Special Reserve, Mozambique
Cited by: 5
Author(s): Ivete Maquia, Paula Fareleira, Isabel Videira e Castro, Ricardo Soares, Denise R. A. Brito, Aires Afonso Mbanze, Aniceto Chaúque, Cristina Máguas, Obinna T. Ezeokoli, Natasha Ribeiro, Isabel Marques, Ana I. Ribeiro‐Barros
Software Mentions: 3
Published: over 3 years ago

10.3390/mps3020039

The Influence of DNA Extraction and Lipid Removal on Human Milk Bacterial Profiles
Cited by: 15
Author(s): Anna Ojo-Okunola, Shantelle Claassen-Weitz, Kilaza Samson Mwaikono, Sugnet Gardner-Lubbe, Heather J. Zar, Mark P. Nicol, Elloise du Toit
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-019-49897-1

Comparative analysis of the fecal microbiota from different species of domesticated and wild suids
Cited by: 21
Author(s): Florencia Correa‐Fiz, Miguel Blanco-Fuertes, María Jesús Navas, Anna Lacasta, Richard P. Bishop, Naftaly Githaka, Cynthia Onzere, Marie‐Frédérique Le Potier, Vanessa Almagro-Delgado, Jorge Martínez, Virginia Aragón, Fernando Rodrı́guez
Software Mentions: 3
Published: about 5 years ago

10.3934/microbiol.2018.2.240

Metatranscriptomics profile of the gill microbial community during <em>Bathymodiolus azoricus</em> aquarium acclimatization at atmospheric pressure
Cited by: 2
Author(s): Inês Barros, Hugo J.C. Froufe, George Marnellos, Conceição Egas, Jennifer A. Delaney, Michele Clamp, Ricardo Serrão Santos, Raúl Bettencourt
Software Mentions: 2
Published: almost 7 years ago

10.1093/ajcn/nqaa388

Remodeling of the gut microbiome during Ramadan-associated intermittent fasting
Cited by: 56
Author(s): Junhong Su, Yueying Wang, Xiaofang Zhang, Mingfu Ma, Zhenrong Xie, Qiuwei Pan, Zhiyong Ma, Maikel P. Peppelenbosch
Software Mentions: 2
Published: over 3 years ago

10.1098/rsta.2017.0344

Quality control for community-based sea-ice model development
Cited by: 10
Author(s): Andrew Roberts, Elizabeth Hunke, Richard A Allard, David A. Bailey, Anthony P Craig, Jean‐François Lemieux, Martin Turner
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0106833

Paleomicrobiology: Revealing Fecal Microbiomes of Ancient Indigenous Cultures
Cited by: 60
Author(s): Raúl J. Cano, Jessica I. Rivera-Pérez, Gary A. Toranzos, Tasha M. Santiago-Rodríguez, Yvonne Narganes-Storde, Luis Chanlatte-Baik, Erileen García-Roldán, Lucy Bunkley-Williams, Steven E. Massey
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0198359

Oxaliplatin-induced changes in microbiota, TLR4+ cells and enhanced HMGB1 expression in the murine colon
Cited by: 30
Author(s): Vanesa Stojanovska, Rachel M. McQuade, Sarah Fraser, Monica D. Prakash, Shakuntla Gondalia, Rhian Stavely, Enzo A. Palombo, Vasso Apostolopoulos, Samy Sakkal, Kulmira Nurgali
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0193652

Next generation sequencing for gut microbiome characterization in rainbow trout (Oncorhynchus mykiss) fed animal by-product meals as an alternative to fishmeal protein sources
Cited by: 98
Author(s): Simona Rimoldi, Genciana Terova, Chiara Ascione, Riccardo Giannico, Fabio Brambilla
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2016.00559

Host and Environmental Specificity in Bacterial Communities Associated to Two Highly Invasive Marine Species (Genus Asparagopsis)
Cited by: 49
Author(s): Tânia Aires, Ester Á. Serrão, Aschwin H. Engelen
Software Mentions: 2
Published: over 8 years ago

10.3390/ijerph16132335

Major Differences in the Diversity of Mycobiomes Associated with Wheat Processing and Domestic Environments: Significant Findings from High-Throughput Sequencing of Fungal Barcode ITS1
Cited by: 5
Author(s): Erika Yashiro, Dessislava Savova-Bianchi, Hélène Niculita‐Hirzel
Software Mentions: 2
Published: over 5 years ago

10.12688/f1000research.20867.1

New technologies to analyse protein function: an intrinsic disorder perspective
Cited by: 17
Author(s): Vladimir N. Uversky
Software Mentions: 1
Published: almost 5 years ago

10.1111/j.1462-2920.2012.02817.x

Culturing captures members of the soil rare biosphere
Cited by: 168
Author(s): Ashley Shade, Clifford S. Hogan, Amy K. Klimowicz, Matthew Linske, Patricia S. McManus, Jo Handelsman
Software Mentions: 1
Published: over 12 years ago

10.3390/ijms140611157

Isolation and Enhancement of a Homogenous in Vitro Human Hertwig’s Epithelial Root Sheath Cell Population
Cited by: 6
Author(s): Manal Farea, Ahmad Sukari Halim, Asma Abdullah Nurul, Chin Keong Lim, Khairani Idah Mokhtar, Zurairah Berahim, Kasmawati Mokhtar, Abdul Qawee Rani, Adam Husein
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0137386

Bacterial Diversity and Community Structure in the Pine Wood Nematode Bursaphelenchus xylophilus and B. mucronatus with Different Virulence by High-Throughput Sequencing of the 16S rDNA
Cited by: 25
Author(s): Yu‐Tao Xiang, Xiao‐Qin Wu, Aidong Zhou
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0173408

Characterization of bacterial community associated with phytoplankton bloom in a eutrophic lake in South Norway using 16S rRNA gene amplicon sequence analysis
Cited by: 65
Author(s): Niranjan Nitin Parulekar, Pandurang Kolekar, Andrew Jenkins, Synne Kleiven, Hans Utkilen, Anette Johansen, Sangeeta Sawant, Urmila Kulkarni‐Kale, Mohan Kale, Mona Sæbø
Software Mentions: 1
Published: over 7 years ago

10.3390/microorganisms8091262

Microorganisms Associated with the Marine Sponge Scopalina hapalia: A Reservoir of Bioactive Molecules to Slow Down the Aging Process
Cited by: 15
Author(s): Charifat Saïd Hassane, Mireille Fouillaud, Géraldine Le Goff, Aimilia D. Sklirou, Jean Bernard Boyer, Ioannis P. Trougakos, Moran Jerabek, Jérôme Bignon, Nicole J. de Voogd, Jamal Ouazzani, Anne Gauvin‐Bialecki, Laurent Dufossé
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2017.00086

Identification of Marker-Trait Associations for Lint Traits in Cotton
Cited by: 23
Author(s): Muhammad Munwar Iqbal, Mehboob‐ur Rahman
Software Mentions: 1
Published: almost 8 years ago

10.1155/2021/6688414

Gastroprotective Effect of Ethanol Extracts from Bark of Magnolia officinalis on Ethanol-Induced Gastric Mucosal Damage in Rats
Cited by: 2
Author(s): Xiao Wang, Shu Ling Fu, Chen Zhang, Xin Nie, Wan Liao, Ming Zhao, Fang Liu
Software Mentions: 1
Published: over 3 years ago

10.3390/s19030557

Analyzing of Gender Behaviors from Paths Using Process Mining: A Shopping Mall Application
Cited by: 30
Author(s): Onur Doğan, Jose-Luis Bayo-Monton, Carlos Fernández-Llatas, Başar Öztayşi
Software Mentions: 1
Published: almost 6 years ago

10.1089/ther.2018.0018

Monitoring of Cerebral Metabolism in Postcardiac Arrest Patients: A Pilot Study
Cited by: 1
Author(s): Minjung Kathy Chae, Sung Eun Lee, So Young Kang, Min Seob Sim
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12917-020-02335-1

Effects of hydrolyzed fish protein and autolyzed yeast as substitutes of fishmeal in the gilthead sea bream (Sparus aurata) diet, on fish intestinal microbiome
Cited by: 29
Author(s): Simona Rimoldi, Elisabetta Gini, João Fernando Albers Koch, Federica Iannini, Fabio Brambilla, Genciana Terova
Software Mentions: 1
Published: over 4 years ago

10.1186/1472-6882-13-305

Healing effects of Musa sapientum var. paradisiaca in diabetic rats with co-occurring gastric ulcer: cytokines and growth factor by PCR amplification
Cited by: 18
Author(s): Manoj Kumar, Meenu Gautam, Amit Singh, Raj Kumar Goel
Software Mentions: 1
Published: about 11 years ago

10.3390/ijms20133342

Bacterial Communities and Virulence Associated with Pine Wood Nematode Bursaphelenchus xylophilus from Different Pinus spp.
Cited by: 15
Author(s): Qi Xue, Yu‐Tao Xiang, Xiao‐Qin Wu, Mingjie Li
Software Mentions: 1
Published: over 5 years ago

10.1155/2018/9463295

Microbial Diversity of Chronic Wound and Successful Management of Traditional Chinese Medicine
Cited by: 11
Author(s): Meiyan Wu, Yan Li, Dongjie Guo, Gang Kui, Bin Li, Yu Deng, Fulun Li
Software Mentions: 1
Published: over 6 years ago

10.1155/2021/7992688

Electroacupuncture Synergistically Inhibits Proinflammatory Cytokine Production and Improves Cognitive Function in Rats with Cognitive Impairment due to Hepatic Encephalopathy through p38MAPK/STAT3 and TLR4/NF-κB Signaling Pathways
Cited by: 5
Author(s): Jiling Huang, Zhigang Gong, Yingnan Kong, Yanwen Huang, Hui Wang, Yingjie Kang, Songhua Zhan
Software Mentions: 1
Published: about 3 years ago