Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41416-020-0851-5

https://doi.org/10.1038/s41416-020-0851-5

Integrated single-cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC-sensitive cell lines

Cited by: 36
Author(s): Luciane T. Kagohara, Fernando T. Zamunér, Emily F. Davis-Marcisak, Gaurav Sharma, Michael Considine, Jawara Allen, Srinivasan Yegnasubramanian, Daria A. Gaykalova, Elana J. Fertig
Published: over 4 years ago

Software Mentions 8

bioconductor: DiffBind
Differential Binding Analysis of ChIP-Seq Peak Data
Papers that mentioned: 217
bioconductor: GSReg
Gene Set Regulation (GS-Reg)
Papers that mentioned: 3
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
pypi: alpha
Alpha platform
Papers that mentioned: 37
pypi: bustools
Python tools for electrical busses
Papers that mentioned: 12
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307
pypi: kb-python
Python wrapper around kallisto | bustools for scRNA-seq analysis
Papers that mentioned: 5
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203