Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: bustools

https://packages.ecosyste.ms/registries/pypi.org/packages/bustools

Python tools for electrical busses
3 versions
Latest release: almost 9 years ago
15 downloads last month

Papers Mentioning bustools 12

CENP-A overexpression promotes distinct fates in human cells, depending on p53 status
Cited by: 23
Author(s): Daniel Jeffery, Alberto Gatto, Katrina Podsypanina, Charlène Renaud-Pageot, Rebeca Ponce Landete, Lorraine Bonneville, Marie Dumont, Daniele Fachinetti, Geneviève Almouzni
Software Mentions: 12
Published: over 3 years ago

10.1371/journal.pcbi.1008585

Preprocessing choices affect RNA velocity results for droplet scRNA-seq data
Cited by: 43
Author(s): Charlotte Soneson, Avi Srivastava, Rob Patro, Michael Stadler
Software Mentions: 11
Published: almost 4 years ago

10.12688/f1000research.22731.2

Fast analysis of scATAC-seq data using a predefined set of genomic regions
Cited by: 10
Author(s): Valentina Giansanti, Ming Tang, Davide Cittaro
Software Mentions: 9
Published: over 4 years ago

10.1038/s41416-020-0851-5

Integrated single-cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC-sensitive cell lines
Cited by: 36
Author(s): Luciane T. Kagohara, Fernando T. Zamunér, Emily F. Davis-Marcisak, Gaurav Sharma, Michael Considine, Jawara Allen, Srinivasan Yegnasubramanian, Daria A. Gaykalova, Elana J. Fertig
Software Mentions: 8
Published: over 4 years ago

10.1038/s42003-021-02440-3

Tumor-derived NKG2D ligand sMIC reprograms NK cells to an inflammatory phenotype through CBM signalosome activation
Cited by: 7
Author(s): Payal Dhar, Fahmin Basher, Zhe Ji, Lei Huang, Si Qin, Derek A. Wainwright, Jerid W. Robinson, Shaye Hagler, Jing Zhou, Sean Mackay, Jennifer D. Wu
Software Mentions: 7
Published: over 3 years ago

10.1186/s12864-021-07930-6

Choice of pre-processing pipeline influences clustering quality of scRNA-seq datasets
Cited by: 4
Author(s): Inbal Shainer, Manuel Stemmer
Software Mentions: 6
Published: over 3 years ago

10.21203/rs.3.rs-362886/v1

Maternal-Fetal Immune Responses in Pregnant Women Infected with SARS-CoV-2
Cited by: 6
Author(s): Valeria Garcia‐Flores, Roberto Romero, Yi Xu, Kevin R. Theis, Marcia Arenas-Hernández, Derek Miller, Azam Peyvandipour, José Galaz, Dustyn Levenson, Gaurav Bhatti, Meyer Gershater, Errile Pusod, David Kracht, Violetta Florova, Yaozhu Leng, Tao Li, Megan Faucett, Robert Para, Chaur‐Dong Hsu, Gary Zhang, Adi L. Tarca, Roger Piqué-Regi, Nardhy Gomez-López
Software Mentions: 6
Published: over 3 years ago

10.1186/s13059-021-02386-z

BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq
Cited by: 4
Author(s): Johan Gustafsson, Jonathan L. Robinson, Jens Nielsen, Lior Pachter
Software Mentions: 5
Published: over 3 years ago

10.1534/g3.120.401160

Evaluation of STAR and Kallisto on Single Cell RNA-Seq Data Alignment
Cited by: 31
Author(s): Yuheng Du, Qizhao Huang, Cédric Arisdakessian, Lana X. Garmire
Software Mentions: 4
Published: over 4 years ago

10.3390/cells9020318

Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity
Cited by: 35
Author(s): Markus Wolfien, Anne-Marie Galow, Paula Müller, Madeleine Bartsch, Ronald M. Brunner, Tom Goldammer, Olaf Wolkenhauer, Andreas Hoeflich, Róbert Dávid
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12974-021-02244-6

Hippocampal glucose uptake as a surrogate of metabolic change of microglia in Alzheimer’s disease
Cited by: 24
Author(s): Hongyoon Choi, Yoori Choi, Eun Ji Lee, Hyun Kim, Young Sun Lee, Seokjun Kwon, Do Won Hwang, Dong Hoon Lee, Alzheimer’s Disease Neuroimaging Initiative
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-020-78942-7

Reliable and accurate diagnostics from highly multiplexed sequencing assays
Cited by: 12
Author(s): A. Sina Booeshaghi, Nathan B. Lubock, Aaron Cooper, Scott W. Simpkins, Joshua S. Bloom, Jase Gehring, Laura Luebbert, Sriram Kosuri, Lior Pachter
Software Mentions: 2
Published: about 4 years ago