Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1008585

https://doi.org/10.1371/journal.pcbi.1008585

Cited by: 43
Author(s): Charlotte Soneson, Avi Srivastava, Rob Patro, Michael Stadler
Published: over 3 years ago

Software Mentions 11

bioconductor: BUSpaRse

kallisto | bustools R utilities
Papers that mentioned: 1

bioconductor: eisaR

Exon-Intron Split Analysis (EISA) in R
Papers that mentioned: 1

bioconductor: GenomicFeatures

Conveniently import and query gene models
Papers that mentioned: 141

bioconductor: scater

Single-Cell Analysis Toolkit for Gene Expression Data in R
Papers that mentioned: 79

bioconductor: SingleCellExperiment

S4 Classes for Single Cell Data
Papers that mentioned: 36

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

pypi: bustools

Python tools for electrical busses
Papers that mentioned: 12

The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307

pypi: kb

Access to National Library of the Netherlands datasets
Papers that mentioned: 2

pypi: kb-python

Python wrapper around kallisto | bustools for scRNA-seq analysis
Papers that mentioned: 5

pypi: velocyto

RNA velocity analysis for single cell RNA-seq data
Papers that mentioned: 25