Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: kb-python

https://packages.ecosyste.ms/registries/pypi.org/packages/kb-python

Python wrapper around kallisto | bustools for scRNA-seq analysis
18 versions
Latest release: over 2 years ago
283 downloads last month

Papers Mentioning kb-python 5

10.1371/journal.pcbi.1008585

Preprocessing choices affect RNA velocity results for droplet scRNA-seq data
Cited by: 43
Author(s): Charlotte Soneson, Avi Srivastava, Rob Patro, Michael Stadler
Software Mentions: 11
Published: almost 4 years ago

10.1038/s41416-020-0851-5

Integrated single-cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC-sensitive cell lines
Cited by: 36
Author(s): Luciane T. Kagohara, Fernando T. Zamunér, Emily F. Davis-Marcisak, Gaurav Sharma, Michael Considine, Jawara Allen, Srinivasan Yegnasubramanian, Daria A. Gaykalova, Elana J. Fertig
Software Mentions: 8
Published: over 4 years ago

10.1186/s12864-021-07930-6

Choice of pre-processing pipeline influences clustering quality of scRNA-seq datasets
Cited by: 4
Author(s): Inbal Shainer, Manuel Stemmer
Software Mentions: 6
Published: about 3 years ago

10.7554/eLife.63930

An in vitro stem cell model of human epiblast and yolk sac interaction
Cited by: 16
Author(s): Kirsty Mackinlay, Bailey A. T. Weatherbee, Viviane Souza Rosa, Charlotte E. Handford, George R. Hudson, Tim Coorens, Lygia V. Pereira, Sam Behjati, Ludovic Vallier, Marta Shahbazi, Magdalena Zernicka‐Goetz
Software Mentions: 5
Published: about 3 years ago

10.3390/ijms21041380

Using Transcriptomic Analysis to Assess Double-Strand Break Repair Activity: Towards Precise in Vivo Genome Editing
Cited by: 9
Author(s): Giovanni Pasquini, Virginia Cora, Anka Swiersy, Kevin Achberger, Lena Antkowiak, Brigitte Müller, Tobias Wimmer, Sabine Anne‐Kristin Fraschka, Nicolas Casadei, Marius Ueffing, Stefan Liebau, Knut Stieger, Volker Busskamp
Software Mentions: 3
Published: over 4 years ago