Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.63930

https://doi.org/10.7554/eLife.63930

An in vitro stem cell model of human epiblast and yolk sac interaction

Cited by: 16
Author(s): Kirsty Mackinlay, Bailey A. T. Weatherbee, Viviane Souza Rosa, Charlotte E. Handford, George R. Hudson, Tim Coorens, Lygia V. Pereira, Sam Behjati, Ludovic Vallier, Marta Shahbazi, Magdalena Zernicka‐Goetz
Published: about 3 years ago

Software Mentions 5

bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893
pypi: kb-python
Python wrapper around kallisto | bustools for scRNA-seq analysis
Papers that mentioned: 5