Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-021-07930-6

https://doi.org/10.1186/s12864-021-07930-6

Choice of pre-processing pipeline influences clustering quality of scRNA-seq datasets

Cited by: 4
Author(s): Inbal Shainer, Manuel Stemmer
Published: about 3 years ago

Software Mentions 6

bioconductor: DropletUtils

Utilities for Handling Single-Cell Droplet Data
Papers that mentioned: 14

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

pypi: bustools

Python tools for electrical busses
Papers that mentioned: 12

The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307

pypi: kb-python

Python wrapper around kallisto | bustools for scRNA-seq analysis
Papers that mentioned: 5