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Papers: 10.1186/s12864-021-07930-6

https://doi.org/10.1186/s12864-021-07930-6

Choice of pre-processing pipeline influences clustering quality of scRNA-seq datasets

Cited by: 4
Author(s): Inbal Shainer, Manuel Stemmer
Published: almost 4 years ago

Software Mentions 6

bioconductor: DropletUtils
Utilities for Handling Single-Cell Droplet Data
Papers that mentioned: 14
Very Likely Science (90)
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
Very Likely Science (100)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: bustools
Python tools for electrical busses
Papers that mentioned: 12
Very Likely Science (65)
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307
Very Likely Science (100)
pypi: kb-python
Python wrapper around kallisto | bustools for scRNA-seq analysis
Papers that mentioned: 5
Very Likely Science (100)