pypi: Integration | Projects | Ecosyste.ms: Papers

10.12688/f1000research.12974.1

Using bio.tools to generate and annotate workbench tool descriptions
Cited by: 8
Author(s): Kenzo-Hugo Hillion, Ivan Kuzmin, Anton Khodak, Helena Rasche, Michael R. Crusoe, Hedi Peterson, Jon C. Ison, Hervé Ménager
Software Mentions: 8
Published: almost 7 years ago

10.3390/genes10020087

Machine Learning and Integrative Analysis of Biomedical Big Data
Cited by: 185
Author(s): Bilal Mirza, Wei Wang, Jie Wang, Howard Choi, Neo Christopher Chung, Peipei Ping
Software Mentions: 7
Published: almost 6 years ago

10.1186/s13012-018-0715-z

Proceedings of the 4th Biennial Conference of the Society for Implementation Research Collaboration (SIRC) 2017: implementation mechanisms: what makes implementation work and why? part 2
Cited by: 1
Author(s): Bryan Garner, David Kaiser, Michael Bradshaw, Elizabeth Ball, Alyssa Katherine Toro, James H. Ford, Mark Zehner, Heather J. Gotham, Traci Rieckmann, Michael Chaple, Kate Speck, Denna Vandersloot, Mat Roosa, Steve Martino
Software Mentions: 7
Published: over 6 years ago

10.3389/fnbot.2020.00036

A Path Toward Explainable AI and Autonomous Adaptive Intelligence: Deep Learning, Adaptive Resonance, and Models of Perception, Emotion, and Action
Cited by: 36
Author(s): Stephen Grossberg
Software Mentions: 6
Published: over 4 years ago

10.1128/mSystems.00913-20

Genome-Scale Metabolic Models and Machine Learning Reveal Genetic Determinants of Antibiotic Resistance in Escherichia coli and Unravel the Underlying Metabolic Adaptation Mechanisms
Cited by: 23
Author(s): Nicole Pearcy, Yue Hu, Michelle Baker, Alexandre Maciel-Guerra, Ning Xue, Wei Wang, Jasmeet Kaler, Zong–Gen Peng, Fengqin Li, Tania Dottorini
Software Mentions: 5
Published: about 3 years ago

10.3389/fpsyg.2016.00610

The Experiment Factory: Standardizing Behavioral Experiments
Cited by: 48
Author(s): Vanessa Sochat, Ian W. Eisenberg, A. Zeynep Enkavi, Jamie Li, Patrick G. Bissett, Russell A. Poldrack
Software Mentions: 5
Published: over 8 years ago

10.1186/1755-8794-6-S2-S6

BioBin: a bioinformatics tool for automating the binning of rare variants using publicly available biological knowledge
Cited by: 33
Author(s): Carrie Moore, John R. Wallace, Alex T. Frase, Sarah A. Pendergrass, Marylyn D. Ritchie
Software Mentions: 5
Published: over 11 years ago

10.1371/journal.pgen.1003959

Low Frequency Variants, Collapsed Based on Biological Knowledge, Uncover Complexity of Population Stratification in 1000 Genomes Project Data
Cited by: 31
Author(s): Carrie Moore, John R. Wallace, Daniel Wolfe, Alex T. Frase, Sarah A. Pendergrass, Kenneth M. Weiss, Marylyn D. Ritchie
Software Mentions: 4
Published: almost 11 years ago

10.7717/peerj.8763

Identification of key genes and pathways affected in epicardial adipose tissue from patients with coronary artery disease by integrated bioinformatics analysis
Cited by: 6
Author(s): Liao Tan, Qian Xu, Qianchen Wang, Ruizheng Shi, Guogang Zhang
Software Mentions: 4
Published: over 4 years ago

10.1186/s12348-018-0156-5

Discovery of tear biomarkers in children with chronic non-infectious anterior uveitis: a pilot study
Cited by: 30
Author(s): Sheila T. Angeles‐Han, Steven Yeh, Purnima Patel, Duc M. Duong, Kirsten Jenkins, Kelly Rouster‐Stevens, Mekibib Altaye, Ndate Fall, Sherry Thornton, Sampath Prahalad, Gary N. Holland
Software Mentions: 4
Published: about 6 years ago

10.1186/s12909-020-02296-x

Interprofessional communication (IPC) for medical students: a scoping review
Cited by: 28
Author(s): Chermaine Bok, Cheng Han Ng, Jeffery Wei Heng Koh, Zhi Hao Ong, Haziratul Zakirah Binte Ghazali, Lorraine Hui En Tan, Yun Ting Ong, Clarissa Wei Shuen Cheong, Annelissa Chin, Stephen Mason, Lalit Kumar Radha Krishna
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-021-93817-1

Lipidomic profile of human nasal mucosa and associations with circulating fatty acids and olfactory deficiency
Cited by: 4
Author(s): Spiro Khoury, Volker Gudziol, Stéphane Grégoire, Stéphanie Cabaret, Susanne Menzel, Lucy Martine, Esther Mézière, Vanessa Soubeyre, Thierry Thomas‐Danguin, Xavier Grosmaître, Lionel Brétillon, Olivier Berdeaux, Niyazi Acar, Thomas Hummel, Anne‐Marie Le Bon
Software Mentions: 3
Published: about 3 years ago

10.3389/fmicb.2018.00782

Distribution Patterns of Polyphosphate Metabolism Pathway and Its Relationships With Bacterial Durability and Virulence
Cited by: 32
Author(s): Liang Wang, Jiawei Yan, Michael J. Wise, Qinghua Liu, James Asenso, Yue Huang, Shiyun Dai, Zhanzhong Liu, Yan Du, Daoquan Tang
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-58688-y

A 4-gene signature from histologically normal surgical margins predicts local recurrence in patients with oral carcinoma: clinical validation
Cited by: 13
Author(s): Patrícia P. Reis, Tomáš Tokár, Rashmi S. Goswami, Yali Xuan, Mahadeo A. Sukhai, Ana Laura Seneda, Luis Eduardo Silva Móz, Bayardo Perez-Ordoñez, Craig D. Simpson, David P. Goldstein, Dale Brown, Ralph W. Gilbert, Patrick Gullane, Jonathan C. Irish, Igor Jurišica, Suzanne Kamel‐Reid
Software Mentions: 2
Published: almost 5 years ago

10.2196/10218

A Surveillance Infrastructure for Malaria Analytics: Provisioning Data Access and Preservation of Interoperability
Cited by: 14
Author(s): Mohammad Sadnan Al Manir, Jon Haël Brenas, Christopher J. O. Baker, Arash Shaban-Nejad
Software Mentions: 2
Published: over 6 years ago

10.3390/ijerph110505349

The Next Generation of Interoperability Agents in Healthcare
Cited by: 62
Author(s): Luciana Cardoso, Fernando Augusto Silva Marins, Filipe Portela, Manuel Filipe Santos, António Abelha, José Machado
Software Mentions: 2
Published: over 10 years ago

10.1590/1518-8345.4282.3437

Simulation effectiveness tool modified (SET-M): adaptation and validation for Brazil
Cited by: 5
Author(s): Ellen Cristina Bergamasco, Diná de Almeida Lopes Monteiro da Cruz
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0217421

MicroRNA modulated networks of adaptive and innate immune response in pancreatic ductal adenocarcinoma
Cited by: 24
Author(s): Tainara F. Felix, Rainer Marco López Lapa, Marcelo Carvalho, Natália Bertoni, Tomáš Tokár, Rogério Antônio de Oliveira, Maria Aparecida Marchesan Rodrigues, Cláudia Nishida Hasimoto, Walmar Kerche de Oliveira, Leonardo Pelafsky, César Tadeu Spadella, Juan Carlos Llanos, Giovanni Faria Silva, Wan L. Lam, Sílvia Regina Rogatto, Luciana Schultz, Sandra A. Drigo, Robson Francisco Carvalho, Patrícia P. Reis
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0166628

Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin
Cited by: 2
Author(s): Tessel E. Galesloot, Niek Verweij, Michela Traglia, Caterina Barbieri, Freerk van Dijk, Anneke Geurts-Moespot, Domenico Girelli, Lambertus A. Kiemeney, Fred C.G.J. Sweep, Morris A. Swertz, Peter Der Van Meer, Clara Camaschella, Daniela Toniolo, Sita H. Vermeulen, Pim Der Van Harst, Dorine W. Swinkels
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2018.01250

Body Mass Index Differences in the Gut Microbiota Are Gender Specific
Cited by: 108
Author(s): Xuefeng Gao, Meirong Zhang, Junmian Xue, Jiandong Huang, Rihong Zhuang, Xiaolin Zhou, Huayue Zhang, Qiang Fu, Yi Hao
Software Mentions: 2
Published: over 6 years ago

10.1186/2041-1480-5-7

The pathway ontology – updates and applications
Cited by: 81
Author(s): Victoria Petri, Padmini Jayaraman, Marek Tutaj, G. Thomas Hayman, Jennifer Smith, Jeff De Pons, Stanley J. F. Laulederkind, T. F. Lowry, Rajni Nigam, Shur-Jen Wang, Mary Shimoyama, Melinda R. Dwinell, Diane H. Munzenmaier, Elizabeth A. Worthey, Howard J. Jacob
Software Mentions: 2
Published: almost 11 years ago

10.3389/fpsyt.2019.00612

Inheritance of HLA-Cw7 Associated With Autism Spectrum Disorder (ASD)
Cited by: 14
Author(s): Terry Harville, Bobbie Rhodes-Clark, Sirish C. Bennuri, Leanna Delhey, John C. Slattery, Marie Tippett, Rebecca Wynne, Shannon Rose, Stephen G. Kahler, Richard E. Frye
Software Mentions: 2
Published: about 5 years ago

10.3390/s17112610

HDOMO: Smart Sensor Integration for an Active and Independent Longevity of the Elderly
Cited by: 13
Author(s): Emanuele Frontoni, Rama Pollini, Paola Russo, Primo Zingaretti, G. Cerri
Software Mentions: 2
Published: almost 7 years ago

10.18632/oncotarget.11805

Computational identification of microRNAs associated to both epithelial to mesenchymal transition and NGAL/MMP-9 pathways in bladder cancer
Cited by: 68
Author(s): Luca Falzone, Saverio Candido, Rossella Salemi, Maria Sofia Basile, Aurora Scalisi, James A. McCubrey, Francesco Torino, Salvatore Santo Signorelli, Maurizio Montella, Massimo Libra
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-016-3391-x

Comparison of DNA quantification methodology used in the DNA extraction protocol for the UK Biobank cohort
Cited by: 63
Author(s): Samantha Welsh, Tim Peakman, Simon Sheard, Rachael Almond
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12879-021-06129-0

Species diversity and spatial distribution of CL/VL vectors: assessing bioclimatic effect on expression plasticity of genes possessing vaccine properties isolated from wild-collected sand flies in endemic areas of Iran
Cited by: 1
Author(s): Ali Bordbar
Software Mentions: 1
Published: over 3 years ago

10.3390/ma14154239

Interfacial Crystallization and Supramolecular Self-Assembly of Spider Silk Inspired Protein at the Water-Air Interface
Cited by: 4
Author(s): Pezhman Mohammadi, Fabian Zemke, Wolfgang Wagermaier, Markus B. Linder
Software Mentions: 1
Published: over 3 years ago

10.1097/MD.0000000000012324

Herbal medicine (Gancao Xiexin decoction) for Behcet disease
Cited by: 2
Author(s): Dongjie Wu, Weiwei Lin, Ka-Wang Wong
Software Mentions: 1
Published: about 6 years ago

10.1016/j.mex.2019.09.025

Supergene validation: A model-based protocol for assessing the accuracy of non-model-based supergene methods
Cited by: 1
Author(s): Richard H. Adams, Todd A. Castoe
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.10185

Genome-wide comparison of four MRSA clinical isolates from Germany and Hungary
Cited by: 6
Author(s): Romen Singh Naorem, Jochen Blom, Csaba Fekete
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0193636

PRISM: An open source framework for the interactive design of GPU volume rendering shaders
Cited by: 8
Author(s): Simon Drouin, D. Louis Collins
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0212158

TRPV4 inhibition prevents increased water diffusion and blood-retina barrier breakdown in the retina of streptozotocin-induced diabetic mice
Cited by: 14
Author(s): Maricruz Orduña Ríos, Ramsés Noguez Imm, Nicole Marilú Hernández Godínez, Ana María Bautista Cortés, Dayana Deyanira López Escalante, Wolfgang Liedtke, A. Torres, Luis Concha, Stéphanie Thébault
Software Mentions: 1
Published: over 5 years ago

10.1002/clc.23390

A novel ablation strategy of premature ventricular contractions originating from summit guided by CartoUNIVU module
Cited by: 0
Author(s): Xue-Xun Li, Jianping Li, Hongxia Chu, Xingpeng Liu
Software Mentions: 1
Published: over 4 years ago

10.1177/0269215520917437

Managing shoulder pain in manual wheelchair users: a scoping review of conservative treatment interventions
Cited by: 14
Author(s): Barry Mason, Martin Warner, Simon Briley, Victoria L. Goosey‐Tolfrey, Riemer J K Vegter
Software Mentions: 1
Published: over 4 years ago

10.1534/g3.115.017095

Rock, Paper, Scissors: Harnessing Complementarity in Ortholog Detection Methods Improves Comparative Genomic Inference
Cited by: 9
Author(s): M. Cyrus Maher, Ryan D. Hernández
Software Mentions: 1
Published: over 9 years ago

10.1186/s13012-017-0565-0

Using Getting To Outcomes to facilitate the use of an evidence-based practice in VA homeless programs: a cluster-randomized trial of an implementation support strategy
Cited by: 23
Author(s): Matthew Chinman, Sharon McCarthy, Gordon Hannah, Thomas Byrne, David A. Smelson
Software Mentions: 1
Published: over 7 years ago

10.1186/1477-5956-11-22

In-depth mass spectrometric mapping of the human vitreous proteome
Cited by: 56
Author(s): Sebastian Aretz, Tim U. Krohne, Kerstin Kammerer, Uwe Warnken, Agnes Hotz‐Wagenblatt, Marion Bergmann, Boris V. Stanzel, Tore Kempf, Frank G. Holz, Martina Schnölzer, Jürgen Kopitz
Software Mentions: 1
Published: over 11 years ago

10.1038/srep08313

Optical nano-woodpiles: large-area metallic photonic crystals and metamaterials
Cited by: 24
Author(s): Lindsey A. Ibbotson, Angela Demetriadou, Stephen Croxall, Ortwin Hess, Jeremy J. Baumberg
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-019-40561-2

Interpretable genotype-to-phenotype classifiers with performance guarantees
Cited by: 70
Author(s): Alexandre Drouin, Gaël Letarte, Frédéric Raymond, Mario Marchand, Jacques Corbeil, François Laviolette
Software Mentions: 1
Published: over 5 years ago

10.1186/s40793-017-0264-0

Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis
Cited by: 11
Author(s): Wah-Seng See-Too, Robson Ee, Yan-Lue Lim, Peter Convey, David A. Pearce, Taznim Begam Mohd Mohidin, Wai‐Fong Yin, Kok‐Gan Chan
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms221810172

Novel Insights into Epigenetic Regulation of IL6 Pathway: In Silico Perspective on Inflammation and Cancer Relationship
Cited by: 24
Author(s): Saverio Candido, Barbara Tomasello, Alessandro Lavoro, Luca Falzone, Giuseppe Gattuso, Massimo Libra
Software Mentions: 1
Published: about 3 years ago

10.1186/1471-2164-11-515

Near-saturated and complete genetic linkage map of black spruce (Picea mariana)
Cited by: 23
Author(s): Bum‐Yong Kang, Ishminder Mann, John E. Major, Om P. Rajora
Software Mentions: 1
Published: about 14 years ago

Projects: pypi: Integration

Papers Mentioning Integration 42