Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: Mallet
https://packages.ecosyste.ms/registries/pypi.org/packages/Mallet
Mallet is a tool for building and maintaining Debian-based virtual servers for web application hosting.
1 version
Latest release: almost 15 years ago
22 downloads last month
Papers Mentioning Mallet 46
10.12688/f1000research.51117.1
Data extraction methods for systematic review (semi)automation: A living systematic reviewCited by: 24
Author(s): Lena Schmidt, Babatunde Kazeem Olorisade, Luke A McGuinness, James Thomas, Julian P T Higgins
Software Mentions: 6
Published: over 3 years ago
10.5195/jmla.2020.836
What we talk about when we talk about medical librarianship: an analysis of Medical Library Association annual meeting abstracts, 2001-2019.Cited by: 4
Author(s): Bethany Myers
Software Mentions: 5
Published: over 4 years ago
10.1186/s40064-016-1675-x
Epidemic model for information diffusion in web forums: experiments in marketing exchange and political dialogCited by: 51
Author(s): Jiyoung Woo, Hsinchun Chen
Software Mentions: 4
Published: almost 9 years ago
10.3389/fnsys.2014.00182
A practical application of text mining to literature on cognitive rehabilitation and enhancement through neurostimulationCited by: 9
Author(s): Puiu Balan, Annelies Gerits, Wim Vanduffel
Software Mentions: 3
Published: about 10 years ago
10.1186/1471-2105-12-S8-S2
The gene normalization task in BioCreative IIICited by: 109
Author(s): Zhiyong Lu, Hung-Yu Kao, Chih-Hsuan Wei, Minlie Huang, Jingchen Liu, Chung‐Hao Kuo, Chun‐Nan Hsu, Richard Tzong-Han Tsai, Hong-Jie Dai, Naoaki Okazaki, Han-Cheol Cho, Martin Gerner, Illés Solt, Shashank Agarwal, Feifan Liu, Dina Vishnyakova, Patrick Ruch, Martin Romacker, Fabio Rinaldi, Sanmitra Bhattacharya, Padmini Srinivasan, Hongfang Liu, Manabu Torii, Sérgio Matos, David Campos, Karin Verspoor, Kevin Livingston, W. John Wilbur
Software Mentions: 3
Published: about 13 years ago
10.1186/s12859-016-1075-9
A novel procedure on next generation sequencing data analysis using text mining algorithmCited by: 10
Author(s): Weizhong Zhao, James J. Chen, Roger Perkins, Yuping Wang, Zhichao Liu, Huixiao Hong, Weida Tong, Wen Zou
Software Mentions: 3
Published: over 8 years ago
10.1186/1471-2105-12-S8-S6
Soft tagging of overlapping high confidence gene mention variants for cross-species full-text gene normalizationCited by: 4
Author(s): Chung‐Hao Kuo, Maurice Ht Ling, Chun‐Nan Hsu
Software Mentions: 3
Published: about 13 years ago
10.3389/fninf.2015.00030
The GAAIN Entity Mapper: An Active-Learning System for Medical Data MappingCited by: 4
Author(s): Naveen Ashish, Peehoo Dewan, Arthur W. Toga
Software Mentions: 3
Published: almost 9 years ago
10.2196/13745
Understanding Weight Loss via Online Discussions: Content Analysis of Reddit Posts Using Topic Modeling and Word Clustering TechniquesCited by: 18
Author(s): Yang Liu, Zhijun Yin
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0073791
Personality, Gender, and Age in the Language of Social Media: The Open-Vocabulary ApproachCited by: 1,128
Author(s): H. Andrew Schwartz, Johannes C. Eichstaedt, Margaret L. Kern, Lukasz Dziurzynski, Stephanie M. Ramones, Megha Agrawal, Aashaq Shah, Michal Kosinski, David Stillwell, Martin E. P. Seligman, Lyle H. Ungar
Software Mentions: 2
Published: about 11 years ago
10.1186/s13326-015-0029-x
A framework for ontology-based question answering with application to parasite immunologyCited by: 22
Author(s): Amir Asiaee, Todd Minning, Prashant Doshi, Rick L. Tarleton
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0155885
Women are Warmer but No Less Assertive than Men: Gender and Language on FacebookCited by: 88
Author(s): Gregory Park, David B. Yaden, H. Andrew Schwartz, Margaret L. Kern, Johannes C. Eichstaedt, Michal Kosinski, David Stillwell, Lyle H. Ungar, Martin E. P. Seligman
Software Mentions: 2
Published: over 8 years ago
10.1186/s13040-015-0043-7
A bibliometric analysis on tobacco regulation investigatorsCited by: 5
Author(s): Dingcheng Li, Janet Okamoto, Hongfang Liu, Scott J. Leischow
Software Mentions: 2
Published: over 9 years ago
10.1186/gb-2008-9-s2-s1
Evaluation of text-mining systems for biology: overview of the Second BioCreative community challengeCited by: 176
Author(s): Martin Krallinger, Alexander A. Morgan, Larry Smith, Florian Leitner, Lorraine Tanabe, W. John Wilbur, Lynette Hirschman, Alfonso Valencia
Software Mentions: 2
Published: almost 17 years ago
10.1186/s12911-018-0699-2
Combination of conditional random field with a rule based method in the extraction of PICO elementsCited by: 11
Author(s): Samir Chabou, Michal Iglewski
Software Mentions: 2
Published: almost 6 years ago
10.1186/1471-2105-12-S2-S5
Automatic classification of sentences to support Evidence Based MedicineCited by: 149
Author(s): Su Nam Kim, David Martínez, Lawrence Cavedon, Lars Yencken
Software Mentions: 2
Published: over 13 years ago
10.2196/jmir.7215
Researching Mental Health Disorders in the Era of Social Media: Systematic ReviewCited by: 177
Author(s): Akkapon Wongkoblap, Miguel A. Vadillo, Vasa Ćurčin
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0238644
Health and kinship matter: Learning about direct-to-consumer genetic testing user experiences via online discussionsCited by: 12
Author(s): Zhijun Yin, Lijun Song, Ellen Wright Clayton, Bradley Malin
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pone.0202162
Detecting urban commercial patterns using a latent semantic information model: A case study of spatial-temporal evolution in Guangzhou, ChinaCited by: 8
Author(s): Shili Chen, Haiyan Tao, Xuliang Li, Zhuo Li
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0199072
Look who’s talking: Two-mode networks as representations of a topic model of New Zealand parliamentary speechesCited by: 30
Author(s): Ben Curran, Kyle Higham, Elisenda Ortiz, Demival Vasques Filho
Software Mentions: 1
Published: over 6 years ago
10.1007/978-3-030-65965-3_37
Monitoring Technoscientific Issues in the NewsCited by: 1
Author(s): Alberto Cammozzo, Emanuele Di Buccio, Federico Neresini
Software Mentions: 1
Published: almost 5 years ago
10.3389/frma.2019.00002
Editorial: Mining Scientific Papers: NLP-enhanced BibliometricsCited by: 23
Author(s): Iana Atanassova, Marc Bertin, Philipp Mayr
Software Mentions: 1
Published: over 5 years ago
10.3390/healthcare9050518
Analysis of Social Media Discussions on (#)Diet by Blue, Red, and Swing States in the U.S.Cited by: 9
Author(s): Amir Karami, Alicia A. Dahl, George Shaw, Sruthi Puthan Valappil, Gabrielle Turner‐McGrievy, Hadi Kharrazi, Parisa Bozorgi
Software Mentions: 1
Published: over 3 years ago
10.1186/2041-1480-4-3
Pooling annotated corpora for clinical concept extractionCited by: 15
Author(s): Kavishwar B. Wagholikar, Manabu Torii, Siddhartha Jonnalagadda, Hongfang Liu
Software Mentions: 1
Published: almost 12 years ago
10.1186/2041-1480-4-S1-S3
Automated Patent Categorization and Guided Patent Search using IPC as Inspired by MeSH and PubMedCited by: 32
Author(s): Daniel Eisinger, George Tsatsaronis, Markus Bundschus, Ulrich Wieneke, Michael Schroeder
Software Mentions: 1
Published: almost 12 years ago
10.1186/1758-2946-7-S1-S1
CHEMDNER: The drugs and chemical names extraction challengeCited by: 194
Author(s): Martin Krallinger, Florian Leitner, Obdulia Rabal, Miguél Vázquez, Julen Oyarzábal, Alfonso Valencia
Software Mentions: 1
Published: almost 10 years ago
10.1186/1471-2105-16-S13-S8
A heuristic approach to determine an appropriate number of topics in topic modelingCited by: 187
Author(s): Weizhong Zhao, James J. Chen, Roger Perkins, Zhichao Liu, Weigong Ge, Yulong Ding, Wen Zou
Software Mentions: 1
Published: almost 9 years ago
10.2196/10834
Characterizing Tweet Volume and Content About Common Health Conditions Across Pennsylvania: Retrospective AnalysisCited by: 19
Author(s): Christopher Tufts, Daniel Polsky, Kevin G. Volpp, Peter W. Groeneveld, Lyle Ungar, Raina M. Merchant, Arthur Pelullo
Software Mentions: 1
Published: almost 6 years ago
10.1186/1758-2946-7-S1-S13
Improving chemical entity recognition through h-index based semantic similarity.Cited by: 20
Author(s): André Lamúrias, João D. Ferreira, Francisco M. Couto
Software Mentions: 1
Published: almost 10 years ago
10.1186/1471-2105-14-171
GeneRIF indexing: sentence selection based on machine learningCited by: 35
Author(s): Antonio Jimeno-Yepes, J Caitlin Sticco, James G. Mork, Alan R. Aronson
Software Mentions: 1
Published: over 11 years ago
10.1186/s12859-018-2240-0
Discovering themes in biomedical literature using a projection-based algorithmCited by: 1
Author(s): Lana Yeganova, Seon Kim, Grigory Balasanov, W. John Wilbur
Software Mentions: 1
Published: over 6 years ago
10.1186/1471-2105-12-S10-S11
Mining FDA drug labels using an unsupervised learning technique - topic modelingCited by: 83
Author(s): Halil Bişğin, Zhichao Liu, Hong Fang, Xiaowei Xu, Weida Tong
Software Mentions: 1
Published: about 13 years ago
10.1186/1471-2105-15-S11-S11
Topic modeling for cluster analysis of large biological and medical datasetsCited by: 50
Author(s): Weizhong Zhao, Wen Zou, James J. Chen
Software Mentions: 1
Published: about 10 years ago
10.1186/1471-2105-15-S17-S6
Mining hidden knowledge for drug safety assessment: topic modeling of LiverTox as a case studyCited by: 9
Author(s): Ke Yu, Jie Zhang, Minjun Chen, Xiaowei Xu, Ayako Suzuki, Katarina Ilić, Weida Tong
Software Mentions: 1
Published: almost 10 years ago
10.1186/1472-6947-13-S1-S6
A method for discovering and inferring appropriate eligibility criteria in clinical trial protocols without labeled dataCited by: 3
Author(s): Angelo C. Restificar, Ioannis Korkontzelos, Sophia Ananiadou
Software Mentions: 1
Published: over 11 years ago
10.1186/1472-6947-9-10
Sentence retrieval for abstracts of randomized controlled trialsCited by: 73
Author(s): Grace Chung
Software Mentions: 1
Published: over 15 years ago
10.1186/s12888-016-1073-5
What’s all the talk about? Topic modelling in a mental health Internet support groupCited by: 32
Author(s): Bradley Carron‐Arthur, Julia Reynolds, Kylie Bennett, Anthony Bennett, Kathleen M Griffiths
Software Mentions: 1
Published: about 8 years ago
10.1186/s12889-016-2932-1
Text mining for identifying topics in the literatures about adolescent substance use and depressionCited by: 62
Author(s): Shi-Heng Wang, Yulong Ding, Weizhong Zhao, Yuanyuan Huang, Roger Perkins, Wen Zou, James J. Chen
Software Mentions: 1
Published: over 8 years ago
10.1186/s12918-014-0093-3
Of text and gene – using text mining methods to uncover hidden knowledge in toxicogenomicsCited by: 11
Author(s): Mi-Kyung Lee, Zhichao Liu, Reagan Kelly, Weida Tong
Software Mentions: 1
Published: about 10 years ago
10.3762/bjnano.6.149
Using natural language processing techniques to inform research on nanotechnologyCited by: 23
Author(s): Nastassja A. Lewinski, Bridget T. McInnes
Software Mentions: 1
Published: over 9 years ago
10.1155/2016/4248026
ChemTok: A New Rule Based Tokenizer for Chemical Named Entity RecognitionCited by: 19
Author(s): Abbas Akkasi, Ekrem Varoğlu, Nazife Dimililer
Software Mentions: 1
Published: almost 9 years ago
10.1155/2015/254838
METSP: A Maximum-Entropy Classifier Based Text Mining Tool for Transporter-Substrate Identification with Semistructured TextCited by: 4
Author(s): Min Zhao, Yanming Chen, Dacheng Qu, Hong Qu
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0174708
Creating an automated trigger for sepsis clinical decision support at emergency department triage using machine learningCited by: 207
Author(s): Steven Horng, David Sontag, Yoni Halpern, Yacine Jernite, Nathan I. Shapiro, Larry Nathanson
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0174807
What can we learn from corporate sustainability reporting? Deriving propositions for research and practice from over 9,500 corporate sustainability reports published between 1999 and 2015 using topic modelling techniqueCited by: 53
Author(s): Nadine Székely, Jan vom Brocke
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0194290
Can Twitter be used to predict county excessive alcohol consumption rates?Cited by: 50
Author(s): Robert D. Ashford, Salvatore Giorgi, Anneke Buffone, Lyle H. Ungar, Robert D. Ashford, Jessie Hemmons, Dan Summers, Casey Hamilton, H. Andrew Schwartz
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0007813
Exploiting Amino Acid Composition for Predicting Protein-Protein InteractionsCited by: 66
Author(s): Sushmita Roy, Diego Martínez, Harriett Platero, Terran Lane, Margaret Werner‐Washburne
Software Mentions: 1
Published: almost 15 years ago