pypi: Mallet | Projects | Ecosyste.ms: Papers

10.12688/f1000research.51117.1

Data extraction methods for systematic review (semi)automation: A living systematic review
Cited by: 24
Author(s): Lena Schmidt, Babatunde Kazeem Olorisade, Luke A McGuinness, James Thomas, Julian P T Higgins
Software Mentions: 6
Published: over 3 years ago

10.5195/jmla.2020.836

What we talk about when we talk about medical librarianship: an analysis of Medical Library Association annual meeting abstracts, 2001-2019.
Cited by: 4
Author(s): Bethany Myers
Software Mentions: 5
Published: about 4 years ago

10.1186/s40064-016-1675-x

Epidemic model for information diffusion in web forums: experiments in marketing exchange and political dialog
Cited by: 51
Author(s): Jiyoung Woo, Hsinchun Chen
Software Mentions: 4
Published: over 8 years ago

10.3389/fnsys.2014.00182

A practical application of text mining to literature on cognitive rehabilitation and enhancement through neurostimulation
Cited by: 9
Author(s): Puiu Balan, Annelies Gerits, Wim Vanduffel
Software Mentions: 3
Published: almost 10 years ago

10.1186/1471-2105-12-S8-S2

The gene normalization task in BioCreative III
Cited by: 109
Author(s): Zhiyong Lu, Hung-Yu Kao, Chih-Hsuan Wei, Minlie Huang, Jingchen Liu, Chung‐Hao Kuo, Chun‐Nan Hsu, Richard Tzong-Han Tsai, Hong-Jie Dai, Naoaki Okazaki, Han-Cheol Cho, Martin Gerner, Illés Solt, Shashank Agarwal, Feifan Liu, Dina Vishnyakova, Patrick Ruch, Martin Romacker, Fabio Rinaldi, Sanmitra Bhattacharya, Padmini Srinivasan, Hongfang Liu, Manabu Torii, Sérgio Matos, David Campos, Karin Verspoor, Kevin Livingston, W. John Wilbur
Software Mentions: 3
Published: almost 13 years ago

10.1186/s12859-016-1075-9

A novel procedure on next generation sequencing data analysis using text mining algorithm
Cited by: 10
Author(s): Weizhong Zhao, James J. Chen, Roger Perkins, Yuping Wang, Zhichao Liu, Huixiao Hong, Weida Tong, Wen Zou
Software Mentions: 3
Published: over 8 years ago

10.1186/1471-2105-12-S8-S6

Soft tagging of overlapping high confidence gene mention variants for cross-species full-text gene normalization
Cited by: 4
Author(s): Chung‐Hao Kuo, Maurice Ht Ling, Chun‐Nan Hsu
Software Mentions: 3
Published: almost 13 years ago

10.3389/fninf.2015.00030

The GAAIN Entity Mapper: An Active-Learning System for Medical Data Mapping
Cited by: 4
Author(s): Naveen Ashish, Peehoo Dewan, Arthur W. Toga
Software Mentions: 3
Published: over 8 years ago

10.2196/13745

Understanding Weight Loss via Online Discussions: Content Analysis of Reddit Posts Using Topic Modeling and Word Clustering Techniques
Cited by: 18
Author(s): Yang Liu, Zhijun Yin
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0073791

Personality, Gender, and Age in the Language of Social Media: The Open-Vocabulary Approach
Cited by: 1,128
Author(s): H. Andrew Schwartz, Johannes C. Eichstaedt, Margaret L. Kern, Lukasz Dziurzynski, Stephanie M. Ramones, Megha Agrawal, Aashaq Shah, Michal Kosinski, David Stillwell, Martin E. P. Seligman, Lyle H. Ungar
Software Mentions: 2
Published: almost 11 years ago

10.1186/s13326-015-0029-x

A framework for ontology-based question answering with application to parasite immunology
Cited by: 22
Author(s): Amir Asiaee, Todd Minning, Prashant Doshi, Rick L. Tarleton
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0155885

Women are Warmer but No Less Assertive than Men: Gender and Language on Facebook
Cited by: 88
Author(s): Gregory Park, David B. Yaden, H. Andrew Schwartz, Margaret L. Kern, Johannes C. Eichstaedt, Michal Kosinski, David Stillwell, Lyle H. Ungar, Martin E. P. Seligman
Software Mentions: 2
Published: over 8 years ago

10.1186/s13040-015-0043-7

A bibliometric analysis on tobacco regulation investigators
Cited by: 5
Author(s): Dingcheng Li, Janet Okamoto, Hongfang Liu, Scott J. Leischow
Software Mentions: 2
Published: over 9 years ago

10.1186/gb-2008-9-s2-s1

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge
Cited by: 176
Author(s): Martin Krallinger, Alexander A. Morgan, Larry Smith, Florian Leitner, Lorraine Tanabe, W. John Wilbur, Lynette Hirschman, Alfonso Valencia
Software Mentions: 2
Published: over 16 years ago

10.1186/s12911-018-0699-2

Combination of conditional random field with a rule based method in the extraction of PICO elements
Cited by: 11
Author(s): Samir Chabou, Michal Iglewski
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2105-12-S2-S5

Automatic classification of sentences to support Evidence Based Medicine
Cited by: 149
Author(s): Su Nam Kim, David Martínez, Lawrence Cavedon, Lars Yencken
Software Mentions: 2
Published: over 13 years ago

10.2196/jmir.7215

Researching Mental Health Disorders in the Era of Social Media: Systematic Review
Cited by: 177
Author(s): Akkapon Wongkoblap, Miguel A. Vadillo, Vasa Ćurčin
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0238644

Health and kinship matter: Learning about direct-to-consumer genetic testing user experiences via online discussions
Cited by: 12
Author(s): Zhijun Yin, Lijun Song, Ellen Wright Clayton, Bradley Malin
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0202162

Detecting urban commercial patterns using a latent semantic information model: A case study of spatial-temporal evolution in Guangzhou, China
Cited by: 8
Author(s): Shili Chen, Haiyan Tao, Xuliang Li, Zhuo Li
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0199072

Look who’s talking: Two-mode networks as representations of a topic model of New Zealand parliamentary speeches
Cited by: 30
Author(s): Ben Curran, Kyle Higham, Elisenda Ortiz, Demival Vasques Filho
Software Mentions: 1
Published: about 6 years ago

10.1007/978-3-030-65965-3_37

Monitoring Technoscientific Issues in the News
Cited by: 1
Author(s): Alberto Cammozzo, Emanuele Di Buccio, Federico Neresini
Software Mentions: 1
Published: over 4 years ago

10.3389/frma.2019.00002

Editorial: Mining Scientific Papers: NLP-enhanced Bibliometrics
Cited by: 23
Author(s): Iana Atanassova, Marc Bertin, Philipp Mayr
Software Mentions: 1
Published: over 5 years ago

10.3390/healthcare9050518

Analysis of Social Media Discussions on (#)Diet by Blue, Red, and Swing States in the U.S.
Cited by: 9
Author(s): Amir Karami, Alicia A. Dahl, George Shaw, Sruthi Puthan Valappil, Gabrielle Turner‐McGrievy, Hadi Kharrazi, Parisa Bozorgi
Software Mentions: 1
Published: over 3 years ago

10.1186/2041-1480-4-3

Pooling annotated corpora for clinical concept extraction
Cited by: 15
Author(s): Kavishwar B. Wagholikar, Manabu Torii, Siddhartha Jonnalagadda, Hongfang Liu
Software Mentions: 1
Published: over 11 years ago

10.1186/2041-1480-4-S1-S3

Automated Patent Categorization and Guided Patent Search using IPC as Inspired by MeSH and PubMed
Cited by: 32
Author(s): Daniel Eisinger, George Tsatsaronis, Markus Bundschus, Ulrich Wieneke, Michael Schroeder
Software Mentions: 1
Published: over 11 years ago

10.1186/1758-2946-7-S1-S1

CHEMDNER: The drugs and chemical names extraction challenge
Cited by: 194
Author(s): Martin Krallinger, Florian Leitner, Obdulia Rabal, Miguél Vázquez, Julen Oyarzábal, Alfonso Valencia
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2105-16-S13-S8

A heuristic approach to determine an appropriate number of topics in topic modeling
Cited by: 187
Author(s): Weizhong Zhao, James J. Chen, Roger Perkins, Zhichao Liu, Weigong Ge, Yulong Ding, Wen Zou
Software Mentions: 1
Published: almost 9 years ago

10.2196/10834

Characterizing Tweet Volume and Content About Common Health Conditions Across Pennsylvania: Retrospective Analysis
Cited by: 19
Author(s): Christopher Tufts, Daniel Polsky, Kevin G. Volpp, Peter W. Groeneveld, Lyle Ungar, Raina M. Merchant, Arthur Pelullo
Software Mentions: 1
Published: almost 6 years ago

10.1186/1758-2946-7-S1-S13

Improving chemical entity recognition through h-index based semantic similarity.
Cited by: 20
Author(s): André Lamúrias, João D. Ferreira, Francisco M. Couto
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2105-14-171

GeneRIF indexing: sentence selection based on machine learning
Cited by: 35
Author(s): Antonio Jimeno-Yepes, J Caitlin Sticco, James G. Mork, Alan R. Aronson
Software Mentions: 1
Published: over 11 years ago

10.1186/s12859-018-2240-0

Discovering themes in biomedical literature using a projection-based algorithm
Cited by: 1
Author(s): Lana Yeganova, Seon Kim, Grigory Balasanov, W. John Wilbur
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2105-12-S10-S11

Mining FDA drug labels using an unsupervised learning technique - topic modeling
Cited by: 83
Author(s): Halil Bişğin, Zhichao Liu, Hong Fang, Xiaowei Xu, Weida Tong
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2105-15-S11-S11

Topic modeling for cluster analysis of large biological and medical datasets
Cited by: 50
Author(s): Weizhong Zhao, Wen Zou, James J. Chen
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2105-15-S17-S6

Mining hidden knowledge for drug safety assessment: topic modeling of LiverTox as a case study
Cited by: 9
Author(s): Ke Yu, Jie Zhang, Minjun Chen, Xiaowei Xu, Ayako Suzuki, Katarina Ilić, Weida Tong
Software Mentions: 1
Published: almost 10 years ago

10.1186/1472-6947-13-S1-S6

A method for discovering and inferring appropriate eligibility criteria in clinical trial protocols without labeled data
Cited by: 3
Author(s): Angelo C. Restificar, Ioannis Korkontzelos, Sophia Ananiadou
Software Mentions: 1
Published: over 11 years ago

10.1186/1472-6947-9-10

Sentence retrieval for abstracts of randomized controlled trials
Cited by: 73
Author(s): Grace Chung
Software Mentions: 1
Published: over 15 years ago

10.1186/s12888-016-1073-5

What’s all the talk about? Topic modelling in a mental health Internet support group
Cited by: 32
Author(s): Bradley Carron‐Arthur, Julia Reynolds, Kylie Bennett, Anthony Bennett, Kathleen M Griffiths
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12889-016-2932-1

Text mining for identifying topics in the literatures about adolescent substance use and depression
Cited by: 62
Author(s): Shi-Heng Wang, Yulong Ding, Weizhong Zhao, Yuanyuan Huang, Roger Perkins, Wen Zou, James J. Chen
Software Mentions: 1
Published: over 8 years ago

10.1186/s12918-014-0093-3

Of text and gene – using text mining methods to uncover hidden knowledge in toxicogenomics
Cited by: 11
Author(s): Mi-Kyung Lee, Zhichao Liu, Reagan Kelly, Weida Tong
Software Mentions: 1
Published: about 10 years ago

10.3762/bjnano.6.149

Using natural language processing techniques to inform research on nanotechnology
Cited by: 23
Author(s): Nastassja A. Lewinski, Bridget T. McInnes
Software Mentions: 1
Published: about 9 years ago

10.1155/2016/4248026

ChemTok: A New Rule Based Tokenizer for Chemical Named Entity Recognition
Cited by: 19
Author(s): Abbas Akkasi, Ekrem Varoğlu, Nazife Dimililer
Software Mentions: 1
Published: over 8 years ago

10.1155/2015/254838

METSP: A Maximum-Entropy Classifier Based Text Mining Tool for Transporter-Substrate Identification with Semistructured Text
Cited by: 4
Author(s): Min Zhao, Yanming Chen, Dacheng Qu, Hong Qu
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0174708

Creating an automated trigger for sepsis clinical decision support at emergency department triage using machine learning
Cited by: 207
Author(s): Steven Horng, David Sontag, Yoni Halpern, Yacine Jernite, Nathan I. Shapiro, Larry Nathanson
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0174807

What can we learn from corporate sustainability reporting? Deriving propositions for research and practice from over 9,500 corporate sustainability reports published between 1999 and 2015 using topic modelling technique
Cited by: 53
Author(s): Nadine Székely, Jan vom Brocke
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0194290

Can Twitter be used to predict county excessive alcohol consumption rates?
Cited by: 50
Author(s): Robert D. Ashford, Salvatore Giorgi, Anneke Buffone, Lyle H. Ungar, Robert D. Ashford, Jessie Hemmons, Dan Summers, Casey Hamilton, H. Andrew Schwartz
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0007813

Exploiting Amino Acid Composition for Predicting Protein-Protein Interactions
Cited by: 66
Author(s): Sushmita Roy, Diego Martínez, Harriett Platero, Terran Lane, Margaret Werner‐Washburne
Software Mentions: 1
Published: almost 15 years ago

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