Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: cox
https://packages.ecosyste.ms/registries/pypi.org/packages/cox
Tools for Experiment Logging
4 versions
Latest release: about 4 years ago
278 downloads last month
Papers Mentioning cox 40
10.1038/s41598-020-75541-4
Stromal microenvironment promoted infiltration in esophageal adenocarcinoma and squamous cell carcinoma: a multi-cohort gene-based analysisCited by: 6
Author(s): Jiali Li, Zhao-Yi Zeng, Xueping Jiang, Nannan Zhang, Yanping Gao, Yuan Luo, Wenjie Sun, Shuying Li, Jiangbo Ren, Yan Gong, Conghua Xie
Software Mentions: 8
Published: almost 4 years ago
10.3390/cancers12123799
A Topic Modeling Analysis of TCGA Breast and Lung Cancer Transcriptomic DataCited by: 11
Author(s): Filippo Valle, Matteo Osella, Michele Caselle
Software Mentions: 8
Published: almost 4 years ago
10.1186/s12935-021-02050-3
Constructe a novel 5 hypoxia genes signature for cervical cancerCited by: 13
Author(s): Yang Yang, Yaling Li, Ruiqun Qi, Lan Zhang
Software Mentions: 7
Published: about 3 years ago
10.3389/fonc.2019.00898
Genome-Wide Identification of a Novel Eight-lncRNA Signature to Improve Prognostic Prediction in Head and Neck Squamous Cell CarcinomaCited by: 26
Author(s): Bowen Yang, Jiming Shen, Xu Lu, Ying Chen, Xiaofang Che, Xiujuan Qu, Yunpeng Liu, Yuee Teng, Zhi Li
Software Mentions: 5
Published: almost 5 years ago
10.18632/aging.202896
Bioinformatic analyses and experimental validation of the role of m6A RNA methylation regulators in progression and prognosis of adrenocortical carcinomaCited by: 13
Author(s): Fangshi Xu, Yawen Guan, Yubo Ma, Li Xue, Peng Zhang, Xiaojie Yang, Tie Chong
Software Mentions: 5
Published: over 3 years ago
10.1186/s12935-020-01264-1
Nine glycolysis-related gene signature predicting the survival of patients with endometrial adenocarcinomaCited by: 26
Author(s): Jinhui Liu, Siyue Li, Feng Gao, Hua Meng, Song Nie, Rui Sun, Jing Yang, Wenjun Cheng
Software Mentions: 4
Published: over 4 years ago
10.1155/2013/873595
A Gradient Boosting Algorithm for Survival Analysis via Direct Optimization of Concordance IndexCited by: 57
Author(s): Yifei Chen, Zhenyu Jia, Dan Mercola, Xiaohui Xie
Software Mentions: 4
Published: over 11 years ago
10.3389/fonc.2019.00079
Time to Treatment Prediction in Chronic Lymphocytic Leukemia Based on New Transcriptional PatternsCited by: 8
Author(s): Adrián Mosquera Orgueira, Beatriz Antelo Rodríguez, Natalia Alonso Vence, Ángeles Bendaña López, José Ángel Díaz Arias, Nicolas Varela, Marta Sonia González Pérez, Manuel Pérez‐Encinas, José Luis Bello López
Software Mentions: 4
Published: over 5 years ago
10.1186/s12885-020-07702-7
The effect of a novel glycolysis-related gene signature on progression, prognosis and immune microenvironment of renal cell carcinomaCited by: 35
Author(s): Fangshi Xu, Yawen Guan, Li Xue, Sheng‐Li Huang, Ke Gao, Zhen Yang, Tie Chong
Software Mentions: 4
Published: almost 4 years ago
10.1093/iob/obz031
Cardiac Performance of Free-Swimming Wild Sockeye Salmon during the Reproductive PeriodCited by: 4
Author(s): Tanya S. Prystay, Robert de Bruijn, Kathryn S. Peiman, Scott G. Hinch, D. Patterson, Anthony P. Farrell, Erika J. Eliason, Steven J. Cooke
Software Mentions: 4
Published: over 4 years ago
10.1042/BSR20200516
Association between SNAP25 and human glioblastoma multiform: a comprehensive bioinformatic analysisCited by: 5
Author(s): Changhong Yu, Jianxing Yin, Xiefeng Wang, Lijiu Chen, Yutian Wei, Chenfei Lu, Yongping You
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-017-00252-2
Seven LncRNA-mRNA based risk score predicts the survival of head and neck squamous cell carcinomaCited by: 32
Author(s): Zhili Zhang, Lijing Zhao, Limin Chai, Shui‐Hong Zhou, Rui Wang, Wei Yan, Yaping Xu, Peng Zhao
Software Mentions: 3
Published: over 7 years ago
10.1002/ctm2.11
The distribution of immune cells within combined hepatocellular carcinoma and cholangiocarcinoma predicts clinical outcomeCited by: 21
Author(s): Bohao Zheng, Jiaqiang Ma, Lingyu Tian, Liangqing Dong, Guohe Song, Jinfeng Pan, Yuming Liu, Shenghong Yang, Xiaoying Wang, Xiaoming Zhang, Jian Zhou, Jia Fan, Jing Shi, Qiang Gao
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0253247
Antirheumatic treatment is associated with reduced serum Syndecan-1 in Rheumatoid ArthritisCited by: 7
Author(s): Gia Deyab, Trine M. Reine, Tram Thu Vuong, Trond Jenssen, Gunnbjørg Hjeltnes, Stefan Agewall, Knut Mikkelsen, Ø. Førre, Morten Wang Fagerland, Svein Olav Kolset, Ivana Hollan
Software Mentions: 2
Published: about 3 years ago
10.7150/thno.46078
Regulation of Hippo/YAP signaling and Esophageal Squamous Carcinoma progression by an E3 ubiquitin ligase PARK2Cited by: 46
Author(s): Xiaofeng Zhou, Yajie Li, Weilong Wang, Sujie Wang, Jinghan Hou, Aijia Zhang, Benjie Lv, Can Gao, Zhe Yan, Dan Pang, Kui Lu, Nor Hazwani Ahmad, Lidong Wang, Jian Zhu, Lichen Zhang, Ting Zhuang, Xiumin Li
Software Mentions: 2
Published: over 4 years ago
10.3389/fmolb.2021.695601
SMPDL3B Predicts Poor Prognosis and Contributes to Development of Acute Myeloid LeukemiaCited by: 2
Author(s): Huiqing Qu, Ye Zhu
Software Mentions: 2
Published: about 3 years ago
10.3389/fonc.2020.00566
A Novel Scoring System for Risk Assessment of Elderly Patients With Cytogenetically Normal Acute Myeloid Leukemia Based on Expression of Three AQP1 DNA Methylation-Associated GenesCited by: 3
Author(s): Xin Yin, Huapin Huang, Sufang Huang, Aihua Xu, Fengjuan Fan, Shanshan Luo, Han Yan, Lei Chen, Chaoyang Sun, Yu Hu
Software Mentions: 2
Published: over 4 years ago
10.3390/genes12020308
The Scope of Astrocyte Elevated Gene-1/Metadherin (AEG-1/MTDH) in Cancer Clinicopathology: A ReviewCited by: 13
Author(s): M. Rehan Khan, Devanand Sarkar
Software Mentions: 1
Published: over 3 years ago
10.7150/jca.30313
Investigation of MiR-92a as a Prognostic Indicator in Cancer Patients: a Meta-AnalysisCited by: 7
Author(s): Yizhong Peng, Danfeng Huang, Qing Xia, Lu Tang, Zhimin Shao
Software Mentions: 1
Published: over 5 years ago
10.7150/jca.35866
Establishing the prediction models for recurrence and progression of T1G3 bladder urothelial carcinomaCited by: 1
Author(s): Song Chen, Mengxin Lü, Tianchen Peng, Yejinpeng Wang, Xuefeng Li, Yu Xiao, Xinghuan Wang
Software Mentions: 1
Published: over 5 years ago
10.7150/jca.38283
Prognostic value of downregulated 5-hydroxymethylcytosine expression in renal cell carcinoma: a 10 year follow-up retrospective studyCited by: 9
Author(s): Song Chen, Qiang Zhou, Tongzu Liu, Weibing Zhang, Xian‐Tao Zeng, Zhongqiang Guo
Software Mentions: 1
Published: over 4 years ago
10.3390/jcm8071034
Circulating Lactonase Activity but Not Protein Level of PON-1 Predicts Adverse Outcomes in Subjects with Chronic Kidney DiseaseCited by: 16
Author(s): Chrysan J. Mohammed, Yanmei Xie, Pamela Brewster, Subhanwita Ghosh, Prabhatchandra Dube, Tiana Sarsour, Andrew L. Kleinhenz, Erin L. Crawford, Deepak Malhotra, Richard James, Philip A. Kalra, Steven T. Haller, David J. Kennedy
Software Mentions: 1
Published: about 5 years ago
10.1038/onc.2015.208
OTUB1 inhibits the ubiquitination and degradation of FOXM1 in breast cancer and epirubicin resistanceCited by: 105
Author(s): U Karunarathna, Mesayamas Kongsema, Stefania Zona, Chun Gong, Elisa Cabrera, Ana Gomes, Ellen P.S. Man, Pasarat Khongkow, J W-H Tsang, Ui‐Soon Khoo, René H. Medema, Raimundo Freire, Eric W.‐F. Lam
Software Mentions: 1
Published: about 9 years ago
10.3390/ijms18060860
B-Myb Is Up-Regulated and Promotes Cell Growth and Motility in Non-Small Cell Lung CancerCited by: 32
Author(s): Yinlong Jin, Hui Zhu, Wei Cai, Xiaoyan Fan, Ying Wang, Yulong Niu, Fangzhou Song, Youquan Bu
Software Mentions: 1
Published: over 7 years ago
10.18632/aging.101839
SP1-induced lncRNA TINCR overexpression contributes to colorectal cancer progression by sponging miR-7-5pCited by: 49
Author(s): Shaojun Yu, Wang Da, Yingkuan Shao, Teng Zhang, Haiting Xie, Xianyang Jiang, Qun Deng, Yurong Jiao, Jing Yang, Can Cheng, Long Sun
Software Mentions: 1
Published: over 5 years ago
10.18632/aging.202364
Gene signatures of 6-methyladenine regulators in women with lung adenocarcinoma and development of a risk scoring system: a retrospective study using the cancer genome atlas databaseCited by: 3
Author(s): Chundi Gao, Jing Zhuang, Huayao Li, Cun Liu, Chao Zhou, Lijuan Liu, Fubin Feng, Changgang Sun
Software Mentions: 1
Published: over 3 years ago
10.1186/s12885-020-07678-4
Immune-related protein signature in serum stratify relapsed mantle cell lymphoma patients based on riskCited by: 3
Author(s): Lavanya Lokhande, Venera Kuci Emruli, Arne Kolstad, Martin Hutchings, Riikka Räty, Mats Jerkeman, Sara Ek
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12904-017-0270-4
Fractionated palliative thoracic radiotherapy in non-small cell lung cancer – futile or worth-while?Cited by: 8
Author(s): Malene S. Frank, Dorte Schou Nørøxe, Lotte Nygård, Gitte Fredberg Persson
Software Mentions: 1
Published: over 6 years ago
10.1186/s12893-021-01316-x
Prognostic value of preoperative body mass index for diabetic patients with non-metastasis gastric cancer: a single center experienceCited by: 3
Author(s): Zaisheng Ye, Shenghong Wei, Yi Zeng, Yi Wang, Zhitao Lin, Chen Shu, Ying Xie, Qinqin Zheng, Luchuan Chen
Software Mentions: 1
Published: about 3 years ago
10.1186/s12935-020-01323-7
Kinesin superfamily protein 21B acts as an oncogene in non-small cell lung cancerCited by: 16
Author(s): Zhigang Sun, Feng Pan, Jing‐Bo Shao, Qian-Qian Yan, Lu Lu, Nan Zhang
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0000032
A Mouse Stromal Response to Tumor Invasion Predicts Prostate and Breast Cancer Patient SurvivalCited by: 52
Author(s): Marina Bacac, Paolo Provero, Nathalie Mayran, Jean-Christophe Stehle, Carlo Fusco, Ivan Stamenkovic
Software Mentions: 1
Published: over 17 years ago
10.1371/journal.pone.0096848
Impact of Response Shift on Time to Deterioration in Quality of Life Scores in Breast Cancer PatientsCited by: 22
Author(s): Zeinab Hamidou, Tienhan Sandrine Dabakuyo‐Yonli, Françis Guillemin, Thierry Conroy, Michel Velten, Damien Jolly, Sylvain Causeret, Olivier Graesslin, Mélanie Gauthier, Mariette Mercier, Franck Bonnetain
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0173562
Cigarette smoking and cardio-renal events in patients with atherosclerotic renal artery stenosisCited by: 11
Author(s): Christopher A. Drummond, Pamela Brewster, Wencan He, Kaili Ren, Yanmei Xie, Katherine R. Tuttle, Steven T. Haller, Kenneth Jamerson, Lance D. Dworkin, Donald E. Cutlip, Timothy P. Murphy, Ralph B. D’Agostino, Wolfgang Henrich, Jiang Tian, Joseph I. Shapiro, Christopher J. Cooper
Software Mentions: 1
Published: over 7 years ago
10.3390/cancers7040888
Tumor Volumes and Prognosis in Laryngeal CancerCited by: 25
Author(s): Mohamad Issa, S. Samuels, Emily L. Bellile, Firas L. Shalabi, Avraham Eisbruch, Gregory T. Wolf
Software Mentions: 1
Published: almost 9 years ago
10.1186/1746-1596-9-55
Activation of P21-activated protein kinase 2 is an independent prognostic predictor for patients with gastric cancerCited by: 32
Author(s): Chunfang Gao, Ma T, Li-Qun Pang, Rui Xie
Software Mentions: 1
Published: over 10 years ago
10.3389/fcell.2021.631534
Identification of a Novel Prognostic Signature for Gastric Cancer Based on Multiple Level Integration and Global Network OptimizationCited by: 4
Author(s): Lin Cui, Ping Wang, Dezhi Ning, Jing Shao, Gui‐Shan Tan, LI Dajian, Xiaoling Zhong, Wanqi Mi, Chunlong Zhang, Shizhu Jin
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2020.00242
Evaluation of the Prognostic Value of STEAP1 in Lung Adenocarcinoma and Insights Into Its Potential Molecular Pathways via Bioinformatic AnalysisCited by: 23
Author(s): Qiang Guo, Xixian Ke, Zhou Liu, Wen Gao, Shixu Fang, Cheng Chen, Yimin Song, Ho‐Seong Han, Haojie Lu, Gang Xu
Software Mentions: 1
Published: over 4 years ago
10.3389/fmolb.2020.00070
XRCC1 Is a Promising Predictive Biomarker and Facilitates Chemo-Resistance in Gallbladder CancerCited by: 10
Author(s): Zhengchun Wu, Xiangshui Miao, Yuanfang Zhang, Daiqiang Li, Qiong Zou, Yuan Yuan, Ru−Shi Liu, Zhulin Yang
Software Mentions: 1
Published: over 4 years ago
10.3389/fphys.2020.01045
Increased Beat-to-Beat Variability of T-Wave Heterogeneity Measured From Standard 12-Lead Electrocardiogram Is Associated With Sudden Cardiac Death: A Case–Control StudyCited by: 6
Author(s): Jenni J Hekkanen, Tuomas Kenttä, M. Anette E. Haukilahti, Janne T. Rahola, Lauri Holmström, Juha Vähätalo, Mikko P. Tulppo, Antti M. Kiviniemi, Lasse Pakanen, Olavi Ukkola, M. Juhani Junttila, Juha S. Perkiömäki
Software Mentions: 1
Published: about 4 years ago
10.3390/genes10010066
A Random Walk Based Cluster Ensemble Approach for Data Integration and Cancer SubtypingCited by: 3
Author(s): Chao Yang, Yutian Wang, Chun-Hou Zheng
Software Mentions: 1
Published: over 5 years ago