Ecosyste.ms: Papers

10.3389/fimmu.2020.00082

Fc Receptor-Like 6 (FCRL6) Discloses Progenitor B Cell Heterogeneity That Correlates With Pre-BCR Dependent and Independent Pathways of Natural Antibody Selection
Cited by: 7
Author(s): Kazuhito Honjo, Woong-Jai Won, R. Glenn King, Lara Ianov, David K. Crossman, Juliet Easlick, Mikhail A. Shakhmatov, Mohamed Khass, André M. Vale, Robert P. Stephan, Ran Li, Randall S. Davis
Software Mentions: 15
Published: over 4 years ago

10.3390/s19204567

Implementation of Sensing and Actuation Capabilities for IoT Devices Using oneM2M Platforms
Cited by: 14
Author(s): Jaeseok Yun, Il-Yeup Ahn, JaeSeung Song, Jae-Ho Kim
Software Mentions: 12
Published: almost 5 years ago

10.12688/f1000research.7563.2

Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences
Cited by: 795
Author(s): Charlotte Soneson, Michael I. Love, Mark D. Robinson
Software Mentions: 9
Published: over 8 years ago

10.1186/1471-2164-15-786

A transcriptome resource for the koala (Phascolarctos cinereus): insights into koala retrovirus transcription and sequence diversity
Cited by: 47
Author(s): Matthew Hobbs, Ana Pavasovic, Andrew King, Peter J. Prentis, Mark D. B. Eldridge, Zhiliang Chen, Donald J. Colgan, Adam Polkinghorne, Marc R. Wilkins, Cheyne Flanagan, Amber Gillett, Jon Hanger, Rebecca N. Johnson, Peter Timms
Software Mentions: 8
Published: about 10 years ago

10.1186/s13321-015-0101-7

Chemozart: a web-based 3D molecular structure editor and visualizer platform
Cited by: 8
Author(s): Mohamad Mohebifar, Fatemehsadat Sajadi
Software Mentions: 5
Published: almost 9 years ago

10.3390/genes11050472

Comparative Transcriptomic Analysis to Identify the Genes Related to Delayed Gland Morphogenesis in Gossypium bickii
Cited by: 7
Author(s): Mushtaque Ali, Hongyan Cheng, Mahtab Soomro, Shuyan Li, Muhammad Tufail, Mian Faisal Nazir, Feng Xu, Youping Zhang, Dongyun Zuo, Limin Lv, Qiaolian Wang, Guoli Song
Software Mentions: 4
Published: over 4 years ago

10.1186/s12865-021-00415-x

Predicting the allergenicity of legume proteins using a PBMC gene expression assay
Cited by: 2
Author(s): Mark Smits, Marjolein Meijerink, Thuy‐My Le, André C. Knulst, Aard de Jong, Martinus Petrus Maria Caspers, Everton Souto Lima, Lilia M. Babé, Gregory S. Ladics, Scott McClain, Geert F. Houben, Kitty Verhoeckx
Software Mentions: 4
Published: over 3 years ago

10.1186/1471-2407-12-426

Stress associated gene expression in blood cells is related to outcome in radiotherapy treated head and neck cancer patients
Cited by: 5
Author(s): Siv Kjølsrud Bøhn, Kjell Magne Russnes, Amrit Kaur Sakhi, Magne Thoresen, Matthew T. G. Holden, Jan Øivind Moskaug, Mari Myhrstad, Ole Kristoffer Olstad, Sigbjørn Smeland, Rune Blomhoff
Software Mentions: 3
Published: about 12 years ago

10.1038/s41598-017-13176-8

Comparative transcriptomics reveal developmental turning points during embryogenesis of a hemimetabolous insect, the damselfly Ischnura elegans
Cited by: 11
Author(s): Sabrina Simon, Sven Sagasser, Edoardo Saccenti, Mercer R. Brugler, Heike Hadrys, George Amato, Rob DeSalle
Software Mentions: 3
Published: almost 7 years ago

10.1590/0074-02760190378

Computational prediction and characterisation of miRNAs and their pathway genes in human schistosomiasis caused by Schistosoma haematobium
Cited by: 3
Author(s): Thaís Cunha de Sousa Cardoso, Carlos Bruno de Araújo, Laysa Gomes Portilho, Luiz Guilherme Alves Mendes, Tamires Caixeta Alves, Gustavo Caetano Silva, Thales Henrique Cherubino Ribeiro, Peterson Elizandro Gandolfi, Enyara Rezende Morais, Laurence Rodrigues do Amaral, Matheus de Souza Gomes
Software Mentions: 3
Published: almost 5 years ago

10.1111/pce.13018

The identification of new candidate genes <scp><i>Triticum aestivum</i></scp><i>FLOWERING LOCUS T3‐B1</i> (<i>TaFT3‐B1</i>) and <i>TARGET OF EAT1</i> (<i>TaTOE1‐B1</i>) controlling the short‐day photoperiod response in bread wheat
Cited by: 30
Author(s): Meluleki Zikhali, Luzie U. Wingen, Michelle Leverington-Waite, Sebastien Specel, Simon Griffiths
Software Mentions: 2
Published: about 7 years ago

10.1111/j.1567-1364.2009.00527.x

Avoiding unscheduled transcription in shared promoters:<i>Saccharomyces cerevisiae</i>Sum1p represses the divergent gene pair<i>SPS18</i>-<i>SPS19</i>through a midsporulation element (MSE)
Cited by: 3
Author(s): Aner Gurvitz, Fumi Suomi, Hanspeter Rottensteiner, J. Kalervo Hiltunen, Ian W. Dawes
Software Mentions: 2
Published: about 15 years ago

10.1186/1471-2164-12-141

Gene expression analyses of immune responses in Atlantic salmon during early stages of infection by salmon louse (Lepeophtheirus salmonis) revealed bi-phasic responses coinciding with the copepod-chalimus transition
Cited by: 138
Author(s): Tariku Markos Tadiso, Aleksei Krasnov, Stanko Škugor, Sergey Afanasyev, Ivar Hordvik, Frank Nilsen
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pntd.0007715

IL-17A, a possible biomarker for the evaluation of treatment response in Trypanosoma cruzi infected children: A 12-months follow-up study in Bolivia
Cited by: 6
Author(s): Clara Vásquez Velásquez, Graciela Russomando, Emilio E. Espínola, Zunilda Sánchez, Kota Mochizuki, Yelin Roca, Jimmy Revollo, Angelica Guzman, Benjamín Quiroga, Susana Rios Morgan, Roberto Vargas Ortiz, Alberto Zambrana Ortega, Eida Espinoza, Juan Eiki Nishizawa, Mohamed Gomaa Kamel, Mihoko Kikuchi, Shusaku Mizukami, Kesara Na‐Bangchang, Nguyen Tien Huy, Kenji Hirayama
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.ppat.1004617

A Rho GDP Dissociation Inhibitor Produced by Apoptotic T-Cells Inhibits Growth of Mycobacterium tuberculosis
Cited by: 11
Author(s): Sambasivan Venkatasubramanian, Rohan Dhiman, Padmaja Paidipally, Satyanarayana Cheekatla, Deepak Tripathi, Elwyn Welch, Amy Tvinnereim, Brenda Jones, Dan Theodorescu, Peter F. Barnes, Ramakrishna Vankayalapati
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pntd.0002117

Conjunctival MicroRNA Expression in Inflammatory Trachomatous Scarring
Cited by: 41
Author(s): Tamsyn Derrick, Chrissy h. Roberts, Megha Rajasekhar, Sarah E. Burr, Hassan Joof, Pateh Makalo, Robin L. Bailey, David Mabey, Matthew J. Burton, Martin J. Holland
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-017-05716-z

Epithelial-derived IL-33 promotes intestinal tumorigenesis in Apc Min/+ mice
Cited by: 60
Author(s): Zhengxiang He, Lili Chen, Fabrício Oliveira Souto, Claudia Canasto-Chibuque, Gerold Bongers, Madhura Deshpande, Noam Harpaz, Huaibin M. Ko, Kevin Kelley, Gláucia C. Furtado, Sérgio A. Lira
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-06080-8

Detection and quantitation of copy number variation in the voltage-gated sodium channel gene of the mosquito Culex quinquefasciatus
Cited by: 20
Author(s): Walter Fabrício Silva Martins, Krishanthi Subramaniam, Keith Steen, Henry Mawejje, Triantafillos Liloglou, Martin J. Donnelly, Craig S. Wilding
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-55486-z

Tracking of quiescence in Leishmania by quantifying the expression of GFP in the ribosomal DNA locus
Cited by: 22
Author(s): Marlene Jara, Ilse Maes, Hideo Imamura, Malgorzata A. Domagalska, Jean Claude Dujardin, Jorge Arévalo
Software Mentions: 1
Published: almost 5 years ago

10.3390/s21144836

Data-Driven Dispatching Rules Mining and Real-Time Decision-Making Methodology in Intelligent Manufacturing Shop Floor with Uncertainty
Cited by: 2
Author(s): Liping Zhang, Yifan Hu, Qiuhua Tang, Jie Li, Zhixiong Li
Software Mentions: 1
Published: about 3 years ago

10.1155/2018/2601945

Potential of iPSC-Derived Mesenchymal Stromal Cells for Treating Periodontal Disease
Cited by: 14
Author(s): Kim Hynes, Richard Bright, Victor Marino, Joseph Kim Fai Ng, Paul J. Verma, Stan Gronthos, P. Mark Bartold
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13046-019-1368-8

Curcumin C3 complex®/Bioperine® has antineoplastic activity in mesothelioma: an in vitro and in vivo analysis
Cited by: 19
Author(s): Francesco Meo, Stefania Filosa, Michele Madonna, Gerarda Giello, Alba Di Pardo, Vittorio Maglione, Alfonso Baldi, Stefania Crispi
Software Mentions: 1
Published: about 5 years ago

10.1186/s12974-014-0195-2

Anti-tat Hutat2:Fc mediated protection against tat-induced neurotoxicity and HIV-1 replication in human monocyte-derived macrophages
Cited by: 6
Author(s): Kai Wen, Wayne A. Marasco, Hsin-I Tong, Mary Margaret Byron, Chengxiang Wu, Yunfan Shi, Si Sun, Yongtao Sun, Yuanan Lu
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.25462

Nucleoporin 153 regulates estrogen-dependent nuclear translocation of endothelial nitric oxide synthase and estrogen receptor beta in prostate cancer
Cited by: 16
Author(s): Agnese Re, Claudia Colussi, Simona Nanni, Aurora Aiello, Lorenza Bacci, Claudio Grassi, Alfredo Pontecorvi, Antonella Farsetti
Software Mentions: 1
Published: over 6 years ago

10.1186/1479-5876-11-27

Maintenance of “stem cell” features of cartilage cell sub-populations during in vitro propagation
Cited by: 26
Author(s): Karin Benz, Claudia Stippich, Christian Freudigmann, J. Mollenhauer, Wilhelm K. Aicher
Software Mentions: 1
Published: over 11 years ago

10.3390/nu11051162

Rice Hull Extract (RHE) Suppresses Adiposity in High-Fat Diet-Induced Obese Mice and Inhibits Differentiation of 3T3-L1 Preadipocytes
Cited by: 9
Author(s): Ga-Hee Kim, Jae‐Yun Ju, Kyung‐Sook Chung, Se‐Yun Cheon, Tae‐Young Gil, Divina C. Cominguez, Yun‐Yeop Cha, Jong‐Hyun Lee, Seong‐Soo Roh, Hyo‐Jin An
Software Mentions: 1
Published: over 5 years ago

10.1186/s12906-017-1734-z

HVC1 ameliorates hyperlipidemia and inflammation in LDLR−/− mice
Cited by: 11
Author(s): Se‐Yun Cheon, Kyung‐Sook Chung, Kyungjin Lee, Ho‐Young Choi, In-Hye Ham, Dong-Hoon Jung, Yun‐Yeop Cha, Hyo‐Jin An
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2172-8-30

CD43 signals induce Type One lineage commitment of human CD4+ T cells
Cited by: 14
Author(s): Oscar Ramírez-Pliego, Diana L Escobar-Zárate, Gemma M Rivera-Martínez, Mayte Guadalupe Cervantes-Badillo, Fernando Esquivel-Guadarrama, Gabriela Rosas-Salgado, Yvonne Rosenstein, María Angélica Santana
Software Mentions: 1
Published: almost 17 years ago

10.1186/1471-2474-13-54

Rheological and biological properties of a hydrogel support for cells intended for intervertebral disc repair
Cited by: 31
Author(s): Karin Benz, Claudia Stippich, Claudia Osswald, Christoph Gaissmaier, Nicolas Lembert, Andreas Badke, Eric Steck, Wilhelm K. Aicher, J. Mollenhauer
Software Mentions: 1
Published: over 12 years ago

10.1590/0074-02760190052

Genome-wide identification, characterisation and expression profiling of the ubiquitin-proteasome genes in Biomphalaria glabrata
Cited by: 3
Author(s): Laysa Gomes Portilho, Bruna Aparecida Rodrigues Duarte, Fábio Ribeiro Queiroz, Thales Henrique Cherubino Ribeiro, Wander de Jesus Jeremias, Elio H. Baba, Paulo Marcos Zech Coelho, Enyara Rezende Morais, Fernanda Janku Cabral, Roberta Lima Caldeira, Matheus de Souza Gomes
Software Mentions: 1
Published: almost 6 years ago

10.1099/mic.0.030676-0

Small heat-shock protein HspL is induced by VirB protein(s) and promotes VirB/D4-mediated DNA transfer in Agrobacterium tumefaciens
Cited by: 23
Author(s): Yun-Long Tsai, Ming-Hsuan Wang, Chan Gao, Sonja Klüsener, Christian Baron, Franz Narberhaus, Erh‐Min Lai
Software Mentions: 1
Published: about 15 years ago

10.3390/molecules200713041

Anti-Inflammatory Activities of Licorice Extract and Its Active Compounds, Glycyrrhizic Acid, Liquiritin and Liquiritigenin, in BV2 Cells and Mice Liver
Cited by: 163
Author(s): Ji Yeon Yu, Jae Yeo Ha, Kyung Mi Kim, Young Suk Jung, Jaehan Jung, Seikwan Oh
Software Mentions: 1
Published: about 9 years ago

10.7717/peerj.5099

corseq: fast and efficient identification of favoured codons from next generation sequencing reads
Cited by: 1
Author(s): Salvatore Camiolo, Andrea Porceddu
Software Mentions: 1
Published: over 6 years ago

10.1186/s13007-020-00596-3

Plant, space and time - linked together in an integrative and scalable data management system for phenomic approaches in agronomic field trials
Cited by: 2
Author(s): A. Honecker, Henrik Schumann, Diana Bečirević, Lasse Klingbeil, Kai Volland, Steffi Forberig, Marc Jansen, Hinrich Paulsen, Heiner Kuhlmann, Jens Léon
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0005549

Gene Expression Profiles of Sporadic Canine Hemangiosarcoma Are Uniquely Associated with Breed
Cited by: 79
Author(s): Beth Tamburini, Susan Trapp, Tzu L. Phang, Jill T. Schappa, Lawrence Hunter, Jaime F. Modiano
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0019678

Muc5b Is the Major Polymeric Mucin in Mucus from Thoroughbred Horses With and Without Airway Mucus Accumulation
Cited by: 7
Author(s): Karine Rousseau, Jacqueline M. Cardwell, Emma Humphrey, Richard Newton, David Knight, Peter Clegg, David J. Thornton
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0086740

Cell-Type Specific Four-Component Hydrogel
Cited by: 9
Author(s): Timo Aberle, Katrin Franke, Elke Rist, Karin Benz, Bürkhard Schlosshauer
Software Mentions: 1
Published: over 10 years ago

10.1111/j.1574-6968.2011.02222.x

Spatial divergence in the proportions of genes encoding toxic peptide synthesis among populations of the cyanobacterium Planktothrix in European lakes
Cited by: 45
Author(s): Rainer Kurmayer, Eva Schober, Linda Tonk, P. Visser, Guntram Christiansen
Software Mentions: 1
Published: over 13 years ago

10.3390/foods10040713

Antioxidant Properties of Pecan Shell Bioactive Components of Different Cultivars and Extraction Methods
Cited by: 5
Author(s): Cameron Cason, Veerachandra K. Yemmireddy, Juan Moreira, Achyut Adhikari
Software Mentions: 1
Published: over 3 years ago

10.1590/S1415-47572010005000094

Exploiting a wheat EST database to assess genetic diversity
Cited by: 9
Author(s): Özge karakaş, Filiz Gürel, Ahu Altınkut Uncuoğlu
Software Mentions: 1
Published: almost 14 years ago

10.1155/2011/598218

Human Chondrosarcoma Cells Acquire an Epithelial-Like Gene Expression Pattern via an Epigenetic Switch: Evidence for Mesenchymal-Epithelial Transition during Sarcomagenesis
Cited by: 35
Author(s): Matthew P. Fitzgerald, Françoise A. Gourronc, Melissa L.T. Teoh, Matthew J. Provenzano, Adam J. Case, James A. Martin, Frederick E. Domann
Software Mentions: 1
Published: almost 14 years ago