Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fimmu.2020.00082

https://doi.org/10.3389/fimmu.2020.00082

Cited by: 7
Author(s): Kazuhito Honjo, Woong-Jai Won, R. Glenn King, Lara Ianov, David K. Crossman, Juliet Easlick, Mikhail A. Shakhmatov, Mohamed Khass, André M. Vale, Robert P. Stephan, Ran Li, Randall S. Davis
Published: over 4 years ago

Software Mentions 15

bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: Rsubread
Mapping, quantification and variant analysis of sequencing data
Papers that mentioned: 331
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggrepel
Automatically Position Non-Overlapping Text Labels with 'ggplot2'
Papers that mentioned: 164
cran: ggseqlogo
A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos
Papers that mentioned: 49
cran: pbmcapply
Tracking the Progress of Mc*pply with Progress Bar
Papers that mentioned: 1
cran: plyr
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
cran: seqinr
Biological Sequences Retrieval and Analysis
Papers that mentioned: 110
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: stringr
Simple, Consistent Wrappers for Common String Operations
Papers that mentioned: 172
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: express
Safely process expressions and templates based on user input.
Papers that mentioned: 42
pypi: plyr
UNKNOWN
Papers that mentioned: 468
pypi: vsearch
The Head First Python Search Tools
Papers that mentioned: 284