pypi: parallel | Projects | Ecosyste.ms: Papers

10.1371/journal.pcbi.1006242

Phylogeny-corrected identification of microbial gene families relevant to human gut colonization
Cited by: 29
Author(s): Patrick H. Bradley, Stephen Nayfach, Katherine S. Pollard
Software Mentions: 27
Published: over 6 years ago

10.1371/journal.pone.0195970

The importance of regional models in assessing canine cancer incidences in Switzerland
Cited by: 4
Author(s): Gianluca Boo, Stefan Leyk, Chris Brunsdon, Ricarda Graf, Andreas Pospischil, Sara Irina Fabrikant
Software Mentions: 18
Published: over 6 years ago

10.3390/cancers12040957

Pan-Cancer Analysis of Radiotherapy Benefits and Immune Infiltration in Multiple Human Cancers
Cited by: 10
Author(s): Pengbo Wen, Yang Gao, Bin Chen, Xiaojing Qi, Guanshuo Hu, An Xu, Junfeng Xia, Lijun Wu, Lu Han, Guoping Zhao
Software Mentions: 16
Published: over 4 years ago

10.3389/fchem.2021.734132

The “DOLPHINS” Project: A Low-Cost Real-Time Multivariate Process Control From Large Sensor Arrays Providing Sparse Binary Data
Cited by: 1
Author(s): Eugenio Alladio, Marcello Baricco, Vincenzo Leogrande, Renato Pagliari, Fabio Pozzi, Paolo Foglio, Marco Vincenti
Software Mentions: 15
Published: over 3 years ago

10.3390/metabo9100222

Chemical Diversity and Classification of Secondary Metabolites in Nine Bryophyte Species
Cited by: 29
Author(s): Kristian Peters, Hendrik Treutler, Stefanie Döll, Alida Kindt, Thomas Hankemeier, Steffen Neumann
Software Mentions: 15
Published: about 5 years ago

10.1038/srep36460

Overlooked habitat of a vulnerable gorgonian revealed in the Mediterranean and Eastern Atlantic by ecological niche modelling
Cited by: 28
Author(s): Joana Boavida, Jorge Assis, Inga Silva, Ester A. Serrão
Software Mentions: 13
Published: about 8 years ago

10.1038/srep44348

Major shifts at the range edge of marine forests: the combined effects of climate changes and limited dispersal
Cited by: 70
Author(s): Jorge Assis, Estíbaliz Berecibar, Bruno Claro, Filipe Alberto, Daniel C. Reed, Peter T. Raimondi, Ester Á. Serrão
Software Mentions: 11
Published: almost 8 years ago

10.1371/journal.pone.0128124

Oceanographic Conditions Limit the Spread of a Marine Invader along Southern African Shores
Cited by: 57
Author(s): Jorge Assis, Mirta Zupan, Katy R. Nicastro, Gerardo I. Zardi, Christopher D. McQuaid, Ester Á. Serrão
Software Mentions: 10
Published: over 9 years ago

10.3389/fonc.2021.582040

The Effects of Autophagy-Related Genes and lncRNAs in Therapy and Prognosis of Colorectal Cancer
Cited by: 5
Author(s): Yang Yang, Mingyang Feng, Liangliang Bai, Mengxi Zhang, Kaiyu Zhou, Wei‐Ting Liao, Wenhua Lei, Nan Zhang, Jiaxing Huang, Li Qiu
Software Mentions: 9
Published: almost 4 years ago

10.1038/s41598-017-10753-9

Evidence for rangewide panmixia despite multiple barriers to dispersal in a marine mussel
Cited by: 20
Author(s): Carla R. Lourenço, Katy R. Nicastro, Christopher D. McQuaid, Rosa M. Chefaoui, Jorge Assis, M. Taleb, Gerardo I. Zardi
Software Mentions: 9
Published: over 7 years ago

10.3389/fnhum.2013.00520

Decreased small-world functional network connectivity and clustering across resting state networks in schizophrenia: an fMRI classification tutorial
Cited by: 74
Author(s): Ariana Anderson, Mark S. Cohen
Software Mentions: 9
Published: almost 12 years ago

10.1371/journal.pone.0191625

Associations between sexual habits, menstrual hygiene practices, demographics and the vaginal microbiome as revealed by Bayesian network analysis
Cited by: 76
Author(s): Noelle Noyes, Kyu Chul Cho, Jacques Ravel, Larry J. Forney, Zaid Abdo
Software Mentions: 8
Published: almost 7 years ago

10.1186/s12935-020-01588-y

A four prognosis-associated lncRNAs (PALnc) based risk score system reflects immune cell infiltration and predicts patient survival in pancreatic cancer
Cited by: 14
Author(s): Hongkai Zhuang, Shanzhou Huang, Zixuan Zhou, Zuyi Ma, Zedan Zhang, Chuanzhao Zhang, Baohua Hou
Software Mentions: 8
Published: about 4 years ago

10.1186/s12859-021-04009-7

SLIDR and SLOPPR: flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data
Cited by: 7
Author(s): Marius Wenzel, Berndt Müller, Jonathan Pettitt
Software Mentions: 8
Published: almost 4 years ago

10.1371/journal.pone.0131530

Genes Left Behind: Climate Change Threatens Cryptic Genetic Diversity in the Canopy-Forming Seaweed Bifurcaria bifurcata
Cited by: 46
Author(s): João Neiva, Jorge Assis, Nelson Castilho Coelho, Francisco Fernandes, Gareth A. Pearson, Ester Á. Serrão
Software Mentions: 8
Published: over 9 years ago

10.1371/journal.pcbi.1007832

Flux-based hierarchical organization of Escherichia coli’s metabolic network
Cited by: 2
Author(s): Semidán Robaina-Estévez, Zoran Nikoloski
Software Mentions: 8
Published: over 4 years ago

10.3389/fcell.2021.665869

Enhancing Fatty Acid Catabolism of Macrophages Within Aberrant Breast Cancer Tumor Microenvironment Can Re-establish Antitumor Function
Cited by: 4
Author(s): Yucui Gu, Xingjian Niu, Lei Yin, Yiran Wang, Yue Yang, Xudong Yang, Qingyuan Zhang, Hongfei Ji
Software Mentions: 8
Published: over 3 years ago

10.3389/fonc.2020.608334

Nomogram for Predicting Lymph Node Involvement in Triple-Negative Breast Cancer
Cited by: 18
Author(s): Xiang Cui, Hongxia Zhu, Jiefu Huang
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0171784

rEHR: An R package for manipulating and analysing Electronic Health Record data
Cited by: 14
Author(s): David A. Springate, Rosa Parisi, Iván Olier, David Reeves, Evangelos Kontopantelis
Software Mentions: 7
Published: almost 8 years ago

10.1093/bioinformatics/bty088

SecretSanta: flexible pipelines for functional secretome prediction
Cited by: 10
Author(s): Anna Gogleva, Hajk-Georg Drost, Sebastián Schornack
Software Mentions: 7
Published: almost 7 years ago

10.1038/s41598-019-38798-y

Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks
Cited by: 10
Author(s): Farzad Abdolhosseini, Behrooz Azarkhalili, Abbas Maazallahi, Aryan Kamal, Seyed Abolfazl Motahari, Ali Sharifi-Zarchi, Hamidreza Chitsaz
Software Mentions: 6
Published: almost 6 years ago

10.1007/s10237-021-01520-x

Spatiotemporal modeling of first and second wave outbreak dynamics of COVID-19 in Germany
Cited by: 10
Author(s): Dorothee Lippold, Andreas Kergaßner, Christian Burkhardt, Matthias Kergaßner, Jonas Loos, Sarah Nistler, Paul Steinmann, Dominik Budday, Silvia Budday
Software Mentions: 6
Published: about 3 years ago

10.1038/s41598-020-57474-0

Rejection of the genetic implications of the “Abundant Centre Hypothesis” in marine mussels
Cited by: 18
Author(s): Noxolo N. Ntuli, Katy R. Nicastro, Gerardo I. Zardi, Jorge Assis, Christopher D. McQuaid, Peter R. Teske
Software Mentions: 6
Published: almost 5 years ago

10.1186/1471-2105-9-390

R/parallel – speeding up bioinformatics analysis with R
Cited by: 27
Author(s): Gonzalo Vera, Ritsert C. Jansen, Remo Suppi
Software Mentions: 5
Published: about 16 years ago

10.1093/dnares/dsaa029

De novo genome assembly of two tomato ancestors, Solanum pimpinellifolium and Solanum lycopersicum var. cerasiforme, by long-read sequencing
Cited by: 19
Author(s): Hitomi Takei, Kenta Shirasawa, Kosuke Kuwabara, Atsushi Toyoda, Yuma Matsuzawa, Shinji Iioka, Tohru Ariizumi
Software Mentions: 5
Published: almost 4 years ago

10.1186/s13059-019-1905-y

Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
Cited by: 442
Author(s): Shujun Ou, Weija Su, Yi Liao, Kapeel Chougule, Jireh Agda, Adam J. Hellinga, Carlos Santiago Blanco Lugo, Tyler A. Elliott, Doreen Ware, Thomas Peterson, Ning Jiang, Candice N. Hirsch, Matthew B. Hufford
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pcbi.1004755

FastGGM: An Efficient Algorithm for the Inference of Gaussian Graphical Model in Biological Networks
Cited by: 55
Author(s): Ting Wang, Zhao Ren, Ying Ding, Zhou Fang, Zhe Sun, Matthew L. MacDonald, Robert A. Sweet, Jieru Wang, Wei Chen
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-021-98126-1

Distance-based clustering challenges for unbiased benchmarking studies
Cited by: 9
Author(s): Michael C. Thrun
Software Mentions: 4
Published: about 3 years ago

10.1016/j.mex.2020.100941

A novel item-allocation procedure for the three-form planned missing data design
Cited by: 2
Author(s): Kyle M. Lang, E. Whitney G. Moore, Elizabeth Grandfield
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0215052

Publication bias examined in meta-analyses from psychology and medicine: A meta-meta-analysis
Cited by: 125
Author(s): Robbie C. M. van Aert, Jelte M. Wicherts, Marcel A.L.M. van Assen
Software Mentions: 3
Published: over 5 years ago

10.1186/s12898-019-0273-5

Species traits, patch turnover and successional dynamics: when does intermediate disturbance favour metapopulation occupancy?
Cited by: 3
Author(s): Frederico Mestre, Ricardo Pita, António Mira, Pedro Beja
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0070651

ParallelStructure: A R Package to Distribute Parallel Runs of the Population Genetics Program STRUCTURE on Multi-Core Computers
Cited by: 148
Author(s): François Besnier, Kevin A. Glover
Software Mentions: 3
Published: over 11 years ago

10.1155/2007/58253

Canonical Decomposition of Ictal Scalp EEG and Accurate Source Localisation: Principles and Simulation Study
Cited by: 36
Author(s): Maarten De Vos, Lieven De Lathauwer, Bart Vanrumste, Sabine Van Huffel, Wim Van Paesschen
Software Mentions: 2
Published: almost 18 years ago

10.1002/jrsm.1336

Statistical properties of methods based on the Q ‐statistic for constructing a confidence interval for the between‐study variance in meta‐analysis
Cited by: 13
Author(s): Robbie C. M. van Aert, Marcel A.L.M. van Assen, Wolfgang Viechtbauer
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2018.00666

Partitioning of Fungal Endophyte Assemblages in Root-Parasitic Plant Cynomorium songaricum and Its Host Nitraria tangutorum
Cited by: 27
Author(s): Jin‐Long Cui, Vinod Vijayakumar, Gang Zhang
Software Mentions: 2
Published: over 6 years ago

10.3390/molecules25225410

Binding Studies of AICAR and Human Serum Albumin by Spectroscopic, Theoretical, and Computational Methodologies
Cited by: 24
Author(s): Shokoufeh Hashempour, Nahid Shahabadi, Aishat Adewoye, Brennen Murphy, Camaray Rouse, Brian A. Salvatore, Christopher F. Stratton, Elahe Mahdavian
Software Mentions: 1
Published: about 4 years ago

10.1186/s13100-019-0193-0

LTR_FINDER_parallel: parallelization of LTR_FINDER enabling rapid identification of long terminal repeat retrotransposons
Cited by: 82
Author(s): Shujun Ou, Ning Jiang
Software Mentions: 1
Published: about 5 years ago

10.1186/s13742-015-0047-8

Second-generation PLINK: rising to the challenge of larger and richer datasets
Cited by: 7,154
Author(s): Chris Chang, Carson C. Chow, Laurent Tellier, Shashaank Vattikuti, Shaun Purcell, James J. Lee
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.55678

Quantitative modeling of the effect of antigen dosage on B-cell affinity distributions in maturating germinal centers
Cited by: 20
Author(s): Marco Molari, Klaus Eyer, Jean Baudry, Simona Cocco, Rémi Monasson
Software Mentions: 1
Published: over 4 years ago

10.3934/microbiol.2017.4.749

Investigation into the fungal diversity within different regions of the gastrointestinal tract of Panaque nigrolineatus, a wood-eating fish
Cited by: 11
Author(s): Caroline Louise Marden, Ryan McDonald, Harold J. Schreier, Joy E. M. Watts
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0146954

Quantification and Statistical Analysis Methods for Vessel Wall Components from Stained Images with Masson's Trichrome
Cited by: 28
Author(s): Pablo Hernández-Morera, Irene Castaño-González, Carmelo Javier León González, Blanca Mompeó, Francisco Ortega-Santana
Software Mentions: 1
Published: almost 9 years ago

Projects: pypi: parallel

Papers Mentioning parallel 41