Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: structure

https://packages.ecosyste.ms/registries/pypi.org/packages/structure

The Structure CLI (Command-Line Tool).
11 versions
Latest release: over 6 years ago
161 downloads last month

Papers Mentioning structure 44

10.1002/ece3.5763
Sex matters: Otolith shape and genomic variation in deacon rockfish (<i>Sebastes diaconus</i>)
Cited by: 18
Author(s): Felix Vaux, Leif K. Rasmuson, Lisa A. Kautzi, Polly S. Rankin, Matthew T. O. Blume, Kelly Lawrence, Sandra Bohn, Kathleen G. O’Malley
Software Mentions: 17
Published: about 5 years ago
10.1002/ece3.5064
North‐facing slopes and elevation shape asymmetric genetic structure in the range‐restricted salamander <i>Plethodon shenandoah</i>
Cited by: 10
Author(s): Kevin P. Mulder, Nandadevi Cortés-Rodríguez, Evan H. Campbell Grant, Adrianne B. Brand, Robert C. Fleischer
Software Mentions: 10
Published: over 5 years ago
10.1002/ece3.5597
Population structure, connectivity, and demographic history of an apex marine predator, the bull shark<i>Carcharhinus leucas</i>
Cited by: 16
Author(s): Agathe Pirog, Virginie Ravigné, Michaël C. Fontaine, Adrien Rieux, Aude Gilabert, Geremy Cliff, Éric Clua, Ryan Daly, Michael R. Heithaus, Jérémy J. Kiszka, Philip Matich, John Nevill, Amy F. Smoothey, Andrew J. Temple, Per Berggren, Sébastien Jaquemet, Hélène Magalon
Software Mentions: 8
Published: over 5 years ago
10.1371/journal.pone.0231744
Combining genetic and demographic monitoring better informs conservation of an endangered urban snake
Cited by: 11
Author(s): Dustin A. Wood, Jonathan P. Rose, Brian J. Halstead, Ricka E. Stoelting, Karen E. Swaim, Amy G. Vandergast
Software Mentions: 8
Published: over 4 years ago
10.1002/ece3.5033
Evidence for contemporary and historical gene flow between guppy populations in different watersheds, with a test for associations with adaptive traits
Cited by: 18
Author(s): Léa Blondel, Lyndsey Baillie, Jessica Quinton, Jahson Berhane Alemu, Ian G. Paterson, Andrew P. Hendry, Paul Bentzen
Software Mentions: 8
Published: almost 6 years ago
10.1111/mec.13644
Unidirectional diploid–tetraploid introgression among British birch trees with shifting ranges shown by restriction site‐associated markers
Cited by: 68
Author(s): Jasmin Zohren, Nian Wang, Igor Kardailsky, James S. Borrell, Anika Joecker, Richard A. Nichols, Richard J. A. Buggs
Software Mentions: 7
Published: over 8 years ago
10.1371/journal.pone.0028913
High Connectivity in the Deepwater Snapper Pristipomoides filamentosus (Lutjanidae) across the Indo-Pacific with Isolation of the Hawaiian Archipelago
Cited by: 73
Author(s): Michelle R. Gaither, Shelley A. Jones, Christopher Kelley, Stephen J. Newman, Laurie Sorenson, Brian W. Bowen
Software Mentions: 7
Published: about 13 years ago
10.1371/journal.pone.0153108
Integrative Taxonomy of Southeast Asian Snail-Eating Turtles (Geoemydidae: Malayemys) Reveals a New Species and Mitochondrial Introgression
Cited by: 22
Author(s): Flora Ihlow, Melita Vamberger, Morris Flecks, Timo Hartmann, Michael Cota, Sunchai Makchai, Pratheep Meewattana, J. E. Dawson, Long Kheng, Dennis Rödder, Uwe Fritz
Software Mentions: 7
Published: over 8 years ago
10.1099/mgen.0.000585
Comparative genomic insights into the epidemiology and virulence of plant pathogenic pseudomonads from Turkey
Cited by: 2
Author(s): Marcus M. Dillon, Tatiana Ruiz-Bedoya, Cedoljub Bundalovic-Torma, Kevin Guttman, Haejin Angela Kwak, Maggie A. Middleton, Pauline W. Wang, Sümer Horuz, Y. Aysan, David S. Guttman
Software Mentions: 6
Published: over 3 years ago
10.1002/ece3.3206
Growth form evolution and hybridization in <i>Senecio</i> (Asteraceae) from the high equatorial Andes
Cited by: 19
Author(s): Eva Dušková, Petr Sklenář, Filip Kolář, Diana L. A. Vásquez, Katya Romoleroux, Tomáš Fér, Karol Marhold
Software Mentions: 5
Published: over 7 years ago
10.1186/s12862-016-0636-x
Evolution of East Asia’s Arcto-Tertiary relict Euptelea (Eupteleaceae) shaped by Late Neogene vicariance and Quaternary climate change
Cited by: 60
Author(s): Yanan Cao, Hans Peter Comes, Shota Sakaguchi, Luyao Chen, Ying‐Xiong Qiu
Software Mentions: 5
Published: almost 9 years ago
10.1002/ece3.2810
Testing the role of ancient and contemporary landscapes on structuring genetic variation in a specialist grasshopper
Cited by: 9
Author(s): Víctor Noguerales, Pedro J. Cordero, Joaquín Ortego
Software Mentions: 4
Published: almost 8 years ago
10.1099/mgen.0.000493
Comparative genomics revealed adaptive admixture in Cryptosporidium hominis in Africa
Cited by: 11
Author(s): Swapnil Tichkule, Aaron R. Jex, Cock van Oosterhout, Anna Rosa Sannella, Ralf Krumkamp, Cassandra Aldrich, Oumou Maïga-Ascofaré, Denise Dekker, Maike Lamshöft, Joyce Mbwana, Njari Rakotozandrindrainy, Steffen Borrmann, Thorsten Thye, Kathrin Schuldt, Doris Winter, Peter G. Kremsner, Kwabena Oppong, Gédéon Prince Manouana, Mirabeau Mbong, Samwel Gesase, Daniel T. R. Minja, Ivo Müeller, Melanie Bahlo, Johanna Nader, Jürgen May, Raphael Rakotozandrindrain, Ayôla Akim Adegnika, John Lusingu, John Amuasi, Daniel Eibach, Simone M. Cacciò
Software Mentions: 3
Published: almost 4 years ago
10.3389/fgene.2019.01089
Molecular Phylogeography Analysis Reveals Population Dynamics and Genetic Divergence of a Widespread Tree Pterocarya stenoptera in China
Cited by: 7
Author(s): Zhi-Hao Qian, Yong Li, Mingwan Li, Yong He, Jiaxin Li, Xiaofan Ye
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pgen.1005361
A Genome Scan for Genes Underlying Microgeographic-Scale Local Adaptation in a Wild Arabidopsis Species
Cited by: 54
Author(s): Susumu Kubota, Takaya Iwasaki, Kousuke Hanada, Atsushi J. Nagano, Asao Fujiyama, Atsushi Toyoda, Sumio Sugano, Yutaka Suzuki, Kouki Hikosaka, Motomi Itô, Shin Ichi Morinaga
Software Mentions: 3
Published: over 9 years ago
10.1111/ibi.12520
Genetic isolation in an endemic African habitat specialist
Cited by: 4
Author(s): Natalie dos Remedios, Clemens Küpper, Tamás Székely, Neil E Baker, Wilferd Versfeld, Patricia L. M. Lee
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0112021
Implications of the Circumpolar Genetic Structure of Polar Bears for Their Conservation in a Rapidly Warming Arctic
Cited by: 45
Author(s): Elizabeth Peacock, Sarah A. Sonsthagen, Martyn E. Obbard, Andrei N. Boltunov, Eric V. Regehr, Nikita Ovsyanikov, Jon Aars, Stephen N. Atkinson, George K. Sage, Andrew G. Hope, Eve Zeyl, Lutz Bachmann, Dorothée Ehrich, Kim T. Scribner, Steven C. Amstrup, Stanislav Belikov, Erik W. Born, Andrew E. Derocher, Ian Stirling, M. Scott Taylor, Øystein Wiig, David Paetkau, Sandra L. Talbot
Software Mentions: 3
Published: almost 10 years ago
10.1371/journal.pone.0070651
ParallelStructure: A R Package to Distribute Parallel Runs of the Population Genetics Program STRUCTURE on Multi-Core Computers
Cited by: 148
Author(s): François Besnier, Kevin A. Glover
Software Mentions: 3
Published: over 11 years ago
10.1002/ece3.3519
Genetic variation in Tertiary relics: The case of eastern‐Mediterranean <i>Abies</i> (Pinaceae)
Cited by: 32
Author(s): Matúš Hrivnák, Ladislav Paule, Diana Krajmerová, Şemsettin Kulaç, Hakan Şevik, İbrahim Turna, Irina Tvauri, Dušan Gömöry
Software Mentions: 3
Published: about 7 years ago
10.1111/eva.12160
Loss of genetic integrity in wild lake trout populations following stocking: insights from an exhaustive study of 72 lakes from <scp>Q</scp>uébec, <scp>C</scp>anada
Cited by: 73
Author(s): Éliane Valiquette, Charles Perrier, Isabel Thibault, Louis Bernatchez
Software Mentions: 2
Published: over 10 years ago
10.3390/ani10091584
Genetic Characterization of the Local Pirenaica Cattle for Parentage and Traceability Purposes
Cited by: 4
Author(s): David Gamarra, Masaaki Taniguchi, Noelia Aldai, Aisaku Arakawa, A. López-Oceja, Marian M. de Pancorbo
Software Mentions: 2
Published: over 4 years ago
10.1111/mec.15316
An explicit test of Pleistocene survival in peripheral versus nunatak refugia in two high mountain plant species
Cited by: 16
Author(s): Da Pan, Karl Hülber, Wolfgang Willner, Gerald M. Schneeweiss
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pgen.1001117
Analysis of Population Structure: A Unifying Framework and Novel Methods Based on Sparse Factor Analysis
Cited by: 143
Author(s): Barbara E. Engelhardt, Matthew Stephens
Software Mentions: 2
Published: over 14 years ago
10.1371/journal.pone.0002411
Patterns of Polymorphism and Demographic History in Natural Populations of Arabidopsis lyrata
Cited by: 173
Author(s): Jeffrey Ross‐Ibarra, Stephen I. Wright, John Paul Foxe, Akira Kawabe, Leah DeRose-Wilson, Gesseca Gos, Deborah Charlesworth, Brandon S. Gaut
Software Mentions: 2
Published: over 16 years ago
10.1371/journal.pone.0006928
Genetic Population Structure Analysis in New Hampshire Reveals Eastern European Ancestry
Cited by: 6
Author(s): Chantel D. Sloan, Angeline D. Andrew, Eric J. Duell, Scott M. Williams, Margaret R. Karagas, Jason H. Moore
Software Mentions: 2
Published: over 15 years ago
10.1111/eva.12756
Phylogeographic diversification and postglacial range dynamics shed light on the conservation of the kelp <i>Saccharina japonica</i>
Cited by: 15
Author(s): Jie Zhang, Jianting Yao, Zi‐Min Hu, Alexander Jueterbock, Norishige Yotsukura, Tatiana N. Krupnova, Chikako Nagasato, Delin Duan
Software Mentions: 2
Published: almost 6 years ago
10.1534/g3.117.041806
Habitat Predicts Levels of Genetic Admixture in<i>Saccharomyces cerevisiae</i>
Cited by: 12
Author(s): Viranga Tilakaratna, Douda Bensasson
Software Mentions: 2
Published: over 7 years ago
10.1016/j.gpb.2018.05.002
AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals
Cited by: 22
Author(s): Qidi Feng, Dongsheng Lu, Shuhua Xu
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pone.0183375
Genetic evidence for subspecies differentiation of the Himalayan marmot, Marmota himalayana, in the Qinghai-Tibet Plateau
Cited by: 3
Author(s): Jingyan Yan, Hongjian Chen, Gonghua Lin, Qian Li, Jiarui Chen, Wen Qin, Jianping Su, Tongzuo Zhang
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0039988
Bringing Together Evolution on Serpentine and Polyploidy: Spatiotemporal History of the Diploid-Tetraploid Complex of Knautia arvensis (Dipsacaceae)
Cited by: 55
Author(s): Filip Kolář, Tomáš Fér, Milan Štech, Pavel Trávníček, Eva Dušková, Peter Schönswetter, Jan Suda
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0002552
Inverse Correlation of Population Similarity and Introduction Date for Invasive Ascidians
Cited by: 11
Author(s): Nathan Silva, William C. Smith
Software Mentions: 1
Published: over 16 years ago
10.1371/journal.pone.0099182
Comparative Genomics and Association Mapping Approaches for Blast Resistant Genes in Finger Millet Using SSRs
Cited by: 67
Author(s): B. Kalyana Babu, Dinesh Pandey, P. K. Agrawal, Salej Sood, C. Chandrashekara, J. C. Bhatt, Anil Kumar
Software Mentions: 1
Published: over 10 years ago
10.1038/srep40261
Quaternary climate change drives allo-peripatric speciation and refugial divergence in the Dysosma versipellis-pleiantha complex from different forest types in China
Cited by: 20
Author(s): Yihan Wang, Hans Peter Comes, Yanan Cao, R.T. Guo, Yun-Rui Mao, Ying‐Xiong Qiu
Software Mentions: 1
Published: almost 8 years ago
10.1111/age.12046
Insights into the genetic history of<scp>G</scp>reen‐legged<scp>P</scp>artridgelike fowl: mt<scp>DNA</scp>and genome‐wide SNP analysis
Cited by: 29
Author(s): Maria Siwek, David Wragg, Anna Sławińska, Mathew J. Malek, Olivier Hanotte, Joram M. Mwacharo
Software Mentions: 1
Published: over 11 years ago
10.1111/j.1752-4571.2012.00285.x
Genetic variation and risks of introgression in the wild<i><scp>C</scp>offea arabica</i>gene pool in south‐western<scp>E</scp>thiopian montane rainforests
Cited by: 76
Author(s): Raf Aerts, Gezahegn Berecha, Pieter Gijbels, Kitessa Hundera, Sabine Van Glabeke, Katrien Vandepitte, Bart Muys, Isabel Roldán‐Ruiz, Olivier Honnay
Software Mentions: 1
Published: over 12 years ago
10.1002/mgg3.884
Genetic polymorphisms analysis of pharmacogenomic VIP variants in Bai ethnic group from China
Cited by: 7
Author(s): Wanlu Chen, Heng Ding, Yujing Cheng, Qi Li, Run Dai, Xin Yang, Chan Zhang
Software Mentions: 1
Published: over 5 years ago
10.1186/s43141-021-00245-9
Genetic and phenotypic diversity of selected Kenyan mung bean (Vigna radiata L. Wilckzek) genotypes
Cited by: 4
Author(s): Jedidah Wangari Mwangi, Oduor Richard Okoth, Muchemi Peterson Kariuki, Mathew Piero Ngugi
Software Mentions: 1
Published: over 3 years ago
10.3390/ijerph18126307
The Relationship between Nutrition Knowledge and Nutrition Facts Table Use in China: A Structural Equation Model
Cited by: 4
Author(s): Ziyan Huang, Beixun Huang, Jiazhang Huang
Software Mentions: 1
Published: over 3 years ago
10.1186/1475-2875-10-289
Population genetic structure of Anopheles arabiensis and Anopheles gambiae in a malaria endemic region of southern Tanzania
Cited by: 17
Author(s): Kija Ng’habi, Bart G. J. Knols, Lee Y, Heather M. Ferguson, Gregory C. Lanzaro
Software Mentions: 1
Published: about 13 years ago
10.1186/1742-4690-10-S1-P91
In vivo SELEX of single-stranded domains in the HIV-1 leader RNA
Cited by: 0
Author(s): Nikki van Bel, Atze T. Das, Ben Berkhout
Software Mentions: 1
Published: over 11 years ago
10.1038/srep08260
Genetic polymorphism analyses of 30 InDels in Chinese Xibe ethnic group and its population genetic differentiations with other groups
Cited by: 37
Author(s): Hao-Tian Meng, Yu-Dang Zhang, Chunmei Shen, Guo-lian Yuan, Chunhua Yang, Rui Jin, Jiangwei Yan, Hongdan Wang, Wenjuan Liu, Jing Hang, Bofeng Zhu
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0091635
Resilience to Disturbance Despite Limited Dispersal and Self-Recruitment in Tropical Barrel Sponges: Implications for Conservation and Management
Cited by: 36
Author(s): James J. Bell, David J. Smith, Danielle Hannan, Abdul Haris, Jamaluddìn Jompa, Lynda Thomas
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0152867
Is There Any Evidence for Rapid, Genetically-Based, Climatic Niche Expansion in the Invasive Common Ragweed?
Cited by: 19
Author(s): Laure Gallien, Wilfried Thuiller, Noémie Fort, Martí Boleda, Florian J. Alberto, Delphine Rioux, Juliette Lainé, Sébastien Lavergne
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0116354
An Ephemeral Sexual Population of Phytophthora infestans in the Northeastern United States and Canada
Cited by: 36
Author(s): Giovanna Danies, Kevin Myers, María Fernanda Mideros, Silvia Restrepo, Frank N. Martin, D. E. L. Cooke, Christine D. Smart, Jean Beagle Ristaino, Abby Seaman, Beth K. Gugino, Niklaus J. Grünwald, William E. Fry
Software Mentions: 1
Published: about 10 years ago