Ecosyste.ms: Papers

10.3389/fpls.2019.01697

Shifts in the Active Rhizobiome Paralleling Low Meloidogyne chitwoodi Densities in Fields Under Prolonged Organic Soil Management
Cited by: 19
Author(s): Paula Harkes, Joris J.M. van Steenbrugge, S.J.J. van den Elsen, Afnan Khalil Ahmad Suleiman, J.J. de Haan, M.H.M. Holterman, J. Helder
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0006826

Comprehensive mRNA Expression Profiling Distinguishes Tauopathies and Identifies Shared Molecular Pathways
Cited by: 35
Author(s): Iraad F. Bronner, Zoltán Bochdanovits, Patrizia Rizzu, Wouter Kamphorst, Rivka Ravid, John van Swieten, Peter Heutink
Software Mentions: 3
Published: about 15 years ago

10.1038/srep33640

Schizophyllum commune has an extensive and functional alternative splicing repertoire
Cited by: 19
Author(s): Thies Gehrmann, Jordi F. Pelkmans, Luis G. Lugones, Han A. B. Wösten, Thomas Abeel, Marcel J. T. Reinders
Software Mentions: 3
Published: almost 8 years ago

10.1186/cc12742

Anti-vascular endothelial growth factor antibody attenuates inflammation and decreases mortality in an experimental model of severe sepsis
Cited by: 52
Author(s): Su Jin Jeong, Sang Hoon Han, Chang Oh Kim, Jun Yong Choi, June Myung Kim
Software Mentions: 3
Published: over 11 years ago

10.1186/1471-2164-9-95

A genome-wide SNP panel for mapping and association studies in the rat
Cited by: 48
Author(s): Isaäc J Nijman, Sylvia Kuipers, Mark Verheul, Victor Guryev, Edwin Cuppen
Software Mentions: 3
Published: over 16 years ago

10.1186/1471-2229-13-220

Differential transcriptome analysis of glandular and filamentous trichomes in Artemisia annua
Cited by: 83
Author(s): Sandra Soetaert, Christophe Van Neste, Mado Vandewoestyne, Steven R. Head, Alain Goossens, Filip Van Nieuwerburgh, Dieter Deforce
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pcbi.1001017

Sequence Motifs in MADS Transcription Factors Responsible for Specificity and Diversification of Protein-Protein Interaction
Cited by: 45
Author(s): Aalt D. J. van Dijk, Giuseppa Morabito, M.W.E.J. Fiers, Roeland C. H. J. van Ham, Gerco C. Angenent, Richard G. H. Immink
Software Mentions: 3
Published: almost 14 years ago

10.1371/journal.pone.0042563

Rho GTPase Expression in Human Myeloid Cells
Cited by: 20
Author(s): Suzanne F. G. van Helden, Eloise C. Anthony, Rob Dee, Peter L. Hordijk
Software Mentions: 2
Published: about 12 years ago

10.3389/fpls.2020.569876

Analysis of QTL DM4.1 for Downy Mildew Resistance in Cucumber Reveals Multiple subQTL: A Novel RLK as Candidate Gene for the Most Important subQTL
Cited by: 10
Author(s): Jeroen A. Berg, Freddy W. K. Hermans, Frank Beenders, Laiqing Lou, Wim H. Vriezen, Richard G. F. Visser, Yuling Bai, Henk J. Schouten
Software Mentions: 2
Published: almost 4 years ago

10.1002/ece3.3931

Epigenetic population differentiation in field- and common garden-grown<i>Scabiosa columbaria</i>plants
Cited by: 18
Author(s): Maartje P. Groot, Cornelis A. M. Wagemaker, N. Joop Ouborg, Koen J. F. Verhoeven, Philippine Vergeer
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.ppat.1003202

A gp41 MPER-specific Llama VHH Requires a Hydrophobic CDR3 for Neutralization but not for Antigen Recognition
Cited by: 62
Author(s): D. Lutje Hulsik, Yingying Lin, Nika M. Strokappe, Simone Battella, Mohamed El Khattabi, Laura E. McCoy, C. Sabin, Andreas Hinz, M. Benjamin Hock, Pauline Machebœuf, Alexandre M. J. J. Bonvin, Johannes P. M. Langedijk, David A. Davis, Anna Forsman Quigley, Marlén M. I. Aasa-Chapman, Michael S. Seaman, Alejandra Ramos, Pascal Poignard, Adrien Favier, Jean-Pierre Simorre, Robin A. Weiss, C. Theo Verrips, Winfríed Weissenhorn, Lucy Rutten
Software Mentions: 2
Published: over 11 years ago

10.1186/s13068-019-1468-x

Continuous n-valerate formation from propionate and methanol in an anaerobic chain elongation open-culture bioreactor
Cited by: 37
Author(s): Sanne M. de Smit, Kasper D. de Leeuw, Cees J.N. Buisman, D.P.B.T.B. Strik
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0065224

The Enterococcus faecium Enterococcal Biofilm Regulator, EbrB, Regulates the esp Operon and Is Implicated in Biofilm Formation and Intestinal Colonization
Cited by: 28
Author(s): Janetta Top, Fernanda L. Paganelli, Xinglin Zhang, Willem van Schaik, Helen L. Leavis, Miranda van Luit-Asbroek, Tom van der Poll, Masja Leendertse, Marc J. M. Bonten, Rob J. L. Willems
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0121123

Commercial Cow Milk Contains Physically Stable Extracellular Vesicles Expressing Immunoregulatory TGF-β
Cited by: 146
Author(s): Bartijn C H Pieters, Onno J. Arntz, Miranda B. Bennink, Mathijs G A Broeren, A. van Caam, Marije I. Koenders, P.L.E.M. van Lent, Wim B. van den Berg, Marieke de Vries, P.M. van der Kraan, Fons A. J. van de Loo
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0029275

Rapid Generation of MicroRNA Sponges for MicroRNA Inhibition
Cited by: 121
Author(s): Joost Kluiver, Johan H. Gibcus, Chris Hettinga, Annelies Adema, Mareike K. S. Richter, Nancy Halsema, Izabella Ślęzak-Prochazka, Ye Ding, Bart-Jan Kroesen, Anke van den Berg
Software Mentions: 1
Published: over 12 years ago

10.1039/c5sc00215j

Controlling the activity of quorum sensing autoinducers with light
Cited by: 35
Author(s): Jan Pieter van der Berg, Willem A. Velema, Wiktor Szymański, Arnold J. M. Driessen, Ben L. Feringa
Software Mentions: 1
Published: over 9 years ago

10.1016/j.dib.2020.106327

Aqueous humor proteome of primary open angle glaucoma: A combined dataset of mass spectrometry studies
Cited by: 0
Author(s): Wouter Hubens, Ronny Mohren, Ilona Liesenborghs, Lars Eijssen, Wishal D. Ramdas, Carroll A.B. Webers, T. G. M. F. Gorgels
Software Mentions: 1
Published: almost 4 years ago

10.1002/eji.201847971

Human milk oligosaccharides promote immune tolerance via direct interactions with human dendritic cells
Cited by: 60
Author(s): Xiao Ling, Wouter R. P. H. van de Worp, Roderick Stassen, Celine van Maastrigt, Nienke Kettelarij, Bernd Stahl, Bernadet Blijenberg, Saskia A. Overbeek, Gert Folkerts, Johan Garssen, Belinda van’t Land
Software Mentions: 1
Published: over 5 years ago

10.1002/eji.201747037

Functional and phenotypical analysis of IL-6-secreting CD4⁺ T cells in human adipose tissue
Cited by: 6
Author(s): Anja J. de Jong, Sabrina Pollastro, Joanneke C Kwekkeboom, S.N. Andersen, Annemarie L. Dorjée, Aleida M. Bakker, Fawaz Alzaïd, Antoine Soprani, Rob G H H Nelissen, Jan B. Mullers, Nicolas Venteclef, Niek de Vries, Margreet Kloppenburg, René E. M. Toes, Andreea Ioan‐Facsinay
Software Mentions: 1
Published: over 6 years ago

10.3390/foods10051064

The Structure and Composition of Extracted Pectin and Residual Cell Wall Material from Processing Tomato: The Role of a Stepwise Approach versus High-Pressure Homogenization-Facilitated Acid Extraction
Cited by: 11
Author(s): J. Van Audenhove, Tom Bernaerts, Victor De Smet, Sophie Delbaere, Ann Van Loey, Marc Hendrickx
Software Mentions: 1
Published: over 3 years ago

10.3390/foods10092078

Comparison of the Technological Application Potential of Functional Ingredients for the Meat Industry Based upon a Novel Fast Screening Tool
Cited by: 2
Author(s): Olivier Goemaere, Bart De Ketelaere, Jana Hanskens, Quinten Masijn, Cristina Pérez Santaescolastica, Ilse Fraeye
Software Mentions: 1
Published: about 3 years ago

10.3389/fncel.2015.00231

The deafness gene DFNA5 induces programmed cell death through mitochondria and MAPK-related pathways
Cited by: 43
Author(s): Sofie Van Rossom, Ken Op de Beeck, Vesna Hristovska, Joris Winderickx, Guy Van Camp
Software Mentions: 1
Published: about 9 years ago

10.3389/fimmu.2019.02476

Enhanced Antiviral Activity of Human Surfactant Protein D by Site-Specific Engineering of the Carbohydrate Recognition Domain
Cited by: 8
Author(s): Martin van Eijk, Marine L. B. Hillaire, Guus F. Rimmelzwaan, Michael J. Rynkiewicz, Mitchell R. White, Kevan L. Hartshorn, M. Hessing, Peter A. Koolmees, Monique H.G. Tersteeg, M.H. van Es, Tjarko Meijerhof, Anke Huckriede, Henk P. Haagsman
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2013.00049

Mesenchymal stem cells are mobilized from the bone marrow during inflammation
Cited by: 27
Author(s): Jos J. de Koning, Gijs Kooij, Helga E. de Vries, Martijn A. Nolte, Reina E. Mebius
Software Mentions: 1
Published: over 11 years ago

10.3389/fimmu.2017.00641

Belatacept Does Not Inhibit Follicular T Cell-Dependent B-Cell Differentiation in Kidney Transplantation
Cited by: 24
Author(s): Gretchen N. de Graav, Dennis A. Hesselink, M. Dieterich, Rens Kraaijeveld, Wenda Verschoor, Dave L. Roelen, Nicolle H.R. Litjens, Anita S. Chong, Willem Weimar, Carla C. Baan
Software Mentions: 1
Published: over 7 years ago

10.1186/s12979-016-0065-0

HCV monoinfection and HIV/HCV coinfection enhance T-cell immune senescence in injecting drug users early during infection
Cited by: 19
Author(s): Bart Grady, Nening M. Nanlohy, Debbie van Baarle
Software Mentions: 1
Published: over 8 years ago

10.3390/jcm8020137

Annexin A1 as Neuroprotective Determinant for Blood-Brain Barrier Integrity in Neonatal Hypoxic-Ischemic Encephalopathy
Cited by: 40
Author(s): Ruth Gussenhoven, Luise Klein, Daan Ophelders, Denise H J Habets, Bernd Giebel, Boris W. Kramer, Leon J. Schurgers, Chris Reutelingsperger, Tim G. A. M. Wolfs
Software Mentions: 1
Published: over 5 years ago

10.1007/s00213-020-05556-2

Perinatal fluoxetine exposure disrupts the circadian response to a phase-shifting challenge in female rats
Cited by: 4
Author(s): Danielle J. Houwing, Jolien de Waard, Anouschka S. Ramsteijn, Tom Woelders, Sietse F. de Boer, Emma J. Wams, Jocelien Olivier
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-84863-w

Low dystrophin variability between muscles and stable expression over time in Becker muscular dystrophy using capillary Western immunoassay
Cited by: 10
Author(s): Z. Koeks, A. A. M. Janson, C. Beekman, Mirko Signorelli, Hermine A. van Duyvenvoorde, J.C. van den Bergen, Melissa T. Hooijmans, Iris Alleman, Ingrid M Hegeman, Jan J. Verschuuren, Judith C. van Deutekom, Pietro Spitali, Nicole A. Datson, Erik H. Niks
Software Mentions: 1
Published: over 3 years ago

10.1186/1742-2094-8-58

Classically and alternatively activated bone marrow derived macrophages differ in cytoskeletal functions and migration towards specific CNS cell types
Cited by: 88
Author(s): Elly J. F. Vereyken, Priscilla Heijnen, Wia Baron, Helga E. de Vries, Christine D. Dijkstra, Charlotte E. Teunissen
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2253-14-111

Can serum L-lactate, D-lactate, creatine kinase and I-FABP be used as diagnostic markers in critically ill patients suspected for bowel ischemia
Cited by: 34
Author(s): Peter H. J. van der Voort, Berit Westra, J. P. J. Wester, Rob J. Bosman, Ilse van Stijn, Inez-Anne Haagen, Ference J. Loupatty, Saskia Rijkenberg
Software Mentions: 1
Published: almost 10 years ago

10.1155/2013/567435

Transcriptionally Repressive Chromatin Remodelling and CpG Methylation in the Presence of Expanded CTG-Repeats at the DM1 Locus
Cited by: 42
Author(s): J.T. Brouwer, Audrey Huguet, Annie Nicole, Arnold Münnich, Geneviève Gourdon
Software Mentions: 1
Published: over 11 years ago

10.1186/s12879-020-05248-4

Point-of-care thrombocyte function testing using multiple-electrode aggregometry in dengue patients: an explorative study
Cited by: 4
Author(s): Wesley de Jong, Tri Pudy Asmarawati, Inge Verbeek, Musofa Rusli, Usman Hadi, Eric C. M. Van Gorp, Marco Goeijenbier
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2199-14-21

Reference loci for RT-qPCR analysis of differentiating human embryonic stem cells
Cited by: 28
Author(s): Liesbeth Vossaert, Thomas O’Leary, Christophe Van Neste, Björn Heindryckx, Jo Vandesompele, Petra De Sutter, Dieter Deforce
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2474-14-235

Mitochondrial respiratory chain dysfunction modulates metalloproteases -1, -3 and -13 in human normal chondrocytes in culture
Cited by: 44
Author(s): Berta Cillero‐Pastor, Ignacio Rego‐Pérez, N. Oreiro, C. Fernández-López, Francisco J. Blanco
Software Mentions: 1
Published: about 11 years ago

10.1186/s12870-015-0635-x

A transposable element insertion in the susceptibility gene CsaMLO8 results in hypocotyl resistance to powdery mildew in cucumber
Cited by: 75
Author(s): Jeroen A. Berg, Michela Appiano, Miguel Santillán Martínez, Freddy W. K. Hermans, Wim H. Vriezen, Richard G. F. Visser, Yuling Bai, Henk J. Schouten
Software Mentions: 1
Published: almost 9 years ago

10.1155/2014/754596

Alterations of the Myovesical Plexus of the Human Overactive Detrusor
Cited by: 3
Author(s): K.A.J. Kuijpers, John Heesakkers, Jack A. Schalken
Software Mentions: 1
Published: over 10 years ago

10.1007/s00428-020-02848-y

Influence of preanalytical variables on performance of delta-like protein 3 (DLL3) predictive immunohistochemistry
Cited by: 1
Author(s): Teodora Radonic, Sylvia Duin, Wim Vos, Pim C. Kortman, Aeilko H. Zwinderman, Erik Thunnissen
Software Mentions: 1
Published: over 4 years ago

10.1186/1746-4811-3-11

Chromatin immunoprecipitation: optimization, quantitative analysis and data normalization
Cited by: 430
Author(s): Max Haring, Sascha Offermann, Tanja Danker, Ina Horst, Christoph Peterhänsel, Maike Stam
Software Mentions: 1
Published: almost 17 years ago

10.1371/currents.md.cbf1d33001de80923ce674302cad7925

Generation of Embryonic Stem Cells and Mice for Duchenne Research
Cited by: 7
Author(s): Marcel H. A. M. Veltrop, Jos van der Kaa, Jill Claassens, Laura Van de Vliet, Sjef Verbeek, Annemieke Aartsma‐Rus
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pgen.1006765

Suspected Lynch syndrome associated MSH6 variants: A functional assay to determine their pathogenicity
Cited by: 14
Author(s): Hellen Houlleberghs, Angelique J. Goverde, Jarnick Lusseveld, Marleen Dekker, Marco J. Bruno, Fred H. Menko, Arjen R. Mensenkamp, Manon C.W. Spaander, Anja Wagner, Robert M.W. Hofstra, Hein te Riele
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0055592

Bone Marrow Alterations and Lower Endothelial Progenitor Cell Numbers in Critical Limb Ischemia Patients
Cited by: 62
Author(s): Martin Teraa, Ralf W. Sprengers, Peter E. Westerweel, Hendrik Gremmels, Marie‐José Goumans, Tom Teerlink, Frans L. Moll, Marianne C. Verhaar
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0002322

The Polycomb Protein and E3 Ubiquitin Ligase Ring1B Harbors an IRES in its Highly Conserved 5′ UTR
Cited by: 10
Author(s): Erwin Boutsma, Sonja Noback, Maarten van Lohuizen
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0079259

Novel B19-Like Parvovirus in the Brain of a Harbor Seal
Cited by: 20
Author(s): Rogier Bodewes, Ana Rubio García, Lidewij Wiersma, Sarah Getu, Martijn Beukers, Claudia M. E. Schapendonk, Peter R. W. A. van Run, Marco W. G. van de Bildt, Marjolein J Poen, Nynke Osinga, Guillermo J. Sánchez Contreras, Thijs Kuiken, Saskia L. Smits, Albert D. M. E. Osterhaus
Software Mentions: 1
Published: almost 11 years ago