Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: duplo
https://packages.ecosyste.ms/registries/pypi.org/packages/duplo
Makes testing easier
4 versions
Latest release: over 10 years ago
19 downloads last month
Papers Mentioning duplo 44
10.3389/fpls.2019.01697
Shifts in the Active Rhizobiome Paralleling Low Meloidogyne chitwoodi Densities in Fields Under Prolonged Organic Soil ManagementCited by: 19
Author(s): Paula Harkes, Joris J.M. van Steenbrugge, S.J.J. van den Elsen, Afnan Khalil Ahmad Suleiman, J.J. de Haan, M.H.M. Holterman, J. Helder
Software Mentions: 4
Published: almost 5 years ago
10.1371/journal.pone.0006826
Comprehensive mRNA Expression Profiling Distinguishes Tauopathies and Identifies Shared Molecular PathwaysCited by: 35
Author(s): Iraad F. Bronner, Zoltán Bochdanovits, Patrizia Rizzu, Wouter Kamphorst, Rivka Ravid, John van Swieten, Peter Heutink
Software Mentions: 3
Published: about 15 years ago
10.1038/srep33640
Schizophyllum commune has an extensive and functional alternative splicing repertoireCited by: 19
Author(s): Thies Gehrmann, Jordi F. Pelkmans, Luis G. Lugones, Han A. B. Wösten, Thomas Abeel, Marcel J. T. Reinders
Software Mentions: 3
Published: about 8 years ago
10.1186/cc12742
Anti-vascular endothelial growth factor antibody attenuates inflammation and decreases mortality in an experimental model of severe sepsisCited by: 52
Author(s): Su Jin Jeong, Sang Hoon Han, Chang Oh Kim, Jun Yong Choi, June Myung Kim
Software Mentions: 3
Published: almost 12 years ago
10.1186/1471-2164-9-95
A genome-wide SNP panel for mapping and association studies in the ratCited by: 48
Author(s): Isaäc J Nijman, Sylvia Kuipers, Mark Verheul, Victor Guryev, Edwin Cuppen
Software Mentions: 3
Published: over 16 years ago
10.1186/1471-2229-13-220
Differential transcriptome analysis of glandular and filamentous trichomes in Artemisia annuaCited by: 83
Author(s): Sandra Soetaert, Christophe Van Neste, Mado Vandewoestyne, Steven R. Head, Alain Goossens, Filip Van Nieuwerburgh, Dieter Deforce
Software Mentions: 3
Published: almost 11 years ago
10.1371/journal.pcbi.1001017
Sequence Motifs in MADS Transcription Factors Responsible for Specificity and Diversification of Protein-Protein InteractionCited by: 45
Author(s): Aalt D. J. van Dijk, Giuseppa Morabito, M.W.E.J. Fiers, Roeland C. H. J. van Ham, Gerco C. Angenent, Richard G. H. Immink
Software Mentions: 3
Published: almost 14 years ago
10.1371/journal.pone.0042563
Rho GTPase Expression in Human Myeloid CellsCited by: 20
Author(s): Suzanne F. G. van Helden, Eloise C. Anthony, Rob Dee, Peter L. Hordijk
Software Mentions: 2
Published: about 12 years ago
10.3389/fpls.2020.569876
Analysis of QTL DM4.1 for Downy Mildew Resistance in Cucumber Reveals Multiple subQTL: A Novel RLK as Candidate Gene for the Most Important subQTLCited by: 10
Author(s): Jeroen A. Berg, Freddy W. K. Hermans, Frank Beenders, Laiqing Lou, Wim H. Vriezen, Richard G. F. Visser, Yuling Bai, Henk J. Schouten
Software Mentions: 2
Published: about 4 years ago
10.1002/ece3.3931
Epigenetic population differentiation in field- and common garden-grown<i>Scabiosa columbaria</i>plantsCited by: 18
Author(s): Maartje P. Groot, Cornelis A. M. Wagemaker, N. Joop Ouborg, Koen J. F. Verhoeven, Philippine Vergeer
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.ppat.1003202
A gp41 MPER-specific Llama VHH Requires a Hydrophobic CDR3 for Neutralization but not for Antigen RecognitionCited by: 62
Author(s): D. Lutje Hulsik, Yingying Lin, Nika M. Strokappe, Simone Battella, Mohamed El Khattabi, Laura E. McCoy, C. Sabin, Andreas Hinz, M. Benjamin Hock, Pauline Machebœuf, Alexandre M. J. J. Bonvin, Johannes P. M. Langedijk, David A. Davis, Anna Forsman Quigley, Marlén M. I. Aasa-Chapman, Michael S. Seaman, Alejandra Ramos, Pascal Poignard, Adrien Favier, Jean-Pierre Simorre, Robin A. Weiss, C. Theo Verrips, Winfríed Weissenhorn, Lucy Rutten
Software Mentions: 2
Published: over 11 years ago
10.1186/s13068-019-1468-x
Continuous n-valerate formation from propionate and methanol in an anaerobic chain elongation open-culture bioreactorCited by: 37
Author(s): Sanne M. de Smit, Kasper D. de Leeuw, Cees J.N. Buisman, D.P.B.T.B. Strik
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0065224
The Enterococcus faecium Enterococcal Biofilm Regulator, EbrB, Regulates the esp Operon and Is Implicated in Biofilm Formation and Intestinal ColonizationCited by: 28
Author(s): Janetta Top, Fernanda L. Paganelli, Xinglin Zhang, Willem van Schaik, Helen L. Leavis, Miranda van Luit-Asbroek, Tom van der Poll, Masja Leendertse, Marc J. M. Bonten, Rob J. L. Willems
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0121123
Commercial Cow Milk Contains Physically Stable Extracellular Vesicles Expressing Immunoregulatory TGF-βCited by: 146
Author(s): Bartijn C H Pieters, Onno J. Arntz, Miranda B. Bennink, Mathijs G A Broeren, A. van Caam, Marije I. Koenders, P.L.E.M. van Lent, Wim B. van den Berg, Marieke de Vries, P.M. van der Kraan, Fons A. J. van de Loo
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0029275
Rapid Generation of MicroRNA Sponges for MicroRNA InhibitionCited by: 121
Author(s): Joost Kluiver, Johan H. Gibcus, Chris Hettinga, Annelies Adema, Mareike K. S. Richter, Nancy Halsema, Izabella Ślęzak-Prochazka, Ye Ding, Bart-Jan Kroesen, Anke van den Berg
Software Mentions: 1
Published: almost 13 years ago
10.1039/c5sc00215j
Controlling the activity of quorum sensing autoinducers with lightCited by: 35
Author(s): Jan Pieter van der Berg, Willem A. Velema, Wiktor Szymański, Arnold J. M. Driessen, Ben L. Feringa
Software Mentions: 1
Published: almost 10 years ago
10.1016/j.dib.2020.106327
Aqueous humor proteome of primary open angle glaucoma: A combined dataset of mass spectrometry studiesCited by: 0
Author(s): Wouter Hubens, Ronny Mohren, Ilona Liesenborghs, Lars Eijssen, Wishal D. Ramdas, Carroll A.B. Webers, T. G. M. F. Gorgels
Software Mentions: 1
Published: about 4 years ago
10.1002/eji.201847971
Human milk oligosaccharides promote immune tolerance via direct interactions with human dendritic cellsCited by: 60
Author(s): Xiao Ling, Wouter R. P. H. van de Worp, Roderick Stassen, Celine van Maastrigt, Nienke Kettelarij, Bernd Stahl, Bernadet Blijenberg, Saskia A. Overbeek, Gert Folkerts, Johan Garssen, Belinda van’t Land
Software Mentions: 1
Published: over 5 years ago
10.1002/eji.201747037
Functional and phenotypical analysis of IL-6-secreting CD4<sup>+</sup> T cells in human adipose tissueCited by: 6
Author(s): Anja J. de Jong, Sabrina Pollastro, Joanneke C Kwekkeboom, S.N. Andersen, Annemarie L. Dorjée, Aleida M. Bakker, Fawaz Alzaïd, Antoine Soprani, Rob G H H Nelissen, Jan B. Mullers, Nicolas Venteclef, Niek de Vries, Margreet Kloppenburg, René E. M. Toes, Andreea Ioan‐Facsinay
Software Mentions: 1
Published: almost 7 years ago
10.3390/foods10051064
The Structure and Composition of Extracted Pectin and Residual Cell Wall Material from Processing Tomato: The Role of a Stepwise Approach versus High-Pressure Homogenization-Facilitated Acid ExtractionCited by: 11
Author(s): J. Van Audenhove, Tom Bernaerts, Victor De Smet, Sophie Delbaere, Ann Van Loey, Marc Hendrickx
Software Mentions: 1
Published: over 3 years ago
10.3390/foods10092078
Comparison of the Technological Application Potential of Functional Ingredients for the Meat Industry Based upon a Novel Fast Screening ToolCited by: 2
Author(s): Olivier Goemaere, Bart De Ketelaere, Jana Hanskens, Quinten Masijn, Cristina Pérez Santaescolastica, Ilse Fraeye
Software Mentions: 1
Published: about 3 years ago
10.3389/fncel.2015.00231
The deafness gene DFNA5 induces programmed cell death through mitochondria and MAPK-related pathwaysCited by: 43
Author(s): Sofie Van Rossom, Ken Op de Beeck, Vesna Hristovska, Joris Winderickx, Guy Van Camp
Software Mentions: 1
Published: over 9 years ago
10.3389/fimmu.2019.02476
Enhanced Antiviral Activity of Human Surfactant Protein D by Site-Specific Engineering of the Carbohydrate Recognition DomainCited by: 8
Author(s): Martin van Eijk, Marine L. B. Hillaire, Guus F. Rimmelzwaan, Michael J. Rynkiewicz, Mitchell R. White, Kevan L. Hartshorn, M. Hessing, Peter A. Koolmees, Monique H.G. Tersteeg, M.H. van Es, Tjarko Meijerhof, Anke Huckriede, Henk P. Haagsman
Software Mentions: 1
Published: about 5 years ago
10.3389/fimmu.2013.00049
Mesenchymal stem cells are mobilized from the bone marrow during inflammationCited by: 27
Author(s): Jos J. de Koning, Gijs Kooij, Helga E. de Vries, Martijn A. Nolte, Reina E. Mebius
Software Mentions: 1
Published: almost 12 years ago
10.3389/fimmu.2017.00641
Belatacept Does Not Inhibit Follicular T Cell-Dependent B-Cell Differentiation in Kidney TransplantationCited by: 24
Author(s): Gretchen N. de Graav, Dennis A. Hesselink, M. Dieterich, Rens Kraaijeveld, Wenda Verschoor, Dave L. Roelen, Nicolle H.R. Litjens, Anita S. Chong, Willem Weimar, Carla C. Baan
Software Mentions: 1
Published: over 7 years ago
10.1186/s12979-016-0065-0
HCV monoinfection and HIV/HCV coinfection enhance T-cell immune senescence in injecting drug users early during infectionCited by: 19
Author(s): Bart Grady, Nening M. Nanlohy, Debbie van Baarle
Software Mentions: 1
Published: over 8 years ago
10.3390/jcm8020137
Annexin A1 as Neuroprotective Determinant for Blood-Brain Barrier Integrity in Neonatal Hypoxic-Ischemic EncephalopathyCited by: 40
Author(s): Ruth Gussenhoven, Luise Klein, Daan Ophelders, Denise H J Habets, Bernd Giebel, Boris W. Kramer, Leon J. Schurgers, Chris Reutelingsperger, Tim G. A. M. Wolfs
Software Mentions: 1
Published: almost 6 years ago
10.1007/s00213-020-05556-2
Perinatal fluoxetine exposure disrupts the circadian response to a phase-shifting challenge in female ratsCited by: 4
Author(s): Danielle J. Houwing, Jolien de Waard, Anouschka S. Ramsteijn, Tom Woelders, Sietse F. de Boer, Emma J. Wams, Jocelien Olivier
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-021-84863-w
Low dystrophin variability between muscles and stable expression over time in Becker muscular dystrophy using capillary Western immunoassayCited by: 10
Author(s): Z. Koeks, A. A. M. Janson, C. Beekman, Mirko Signorelli, Hermine A. van Duyvenvoorde, J.C. van den Bergen, Melissa T. Hooijmans, Iris Alleman, Ingrid M Hegeman, Jan J. Verschuuren, Judith C. van Deutekom, Pietro Spitali, Nicole A. Datson, Erik H. Niks
Software Mentions: 1
Published: over 3 years ago
10.1186/1742-2094-8-58
Classically and alternatively activated bone marrow derived macrophages differ in cytoskeletal functions and migration towards specific CNS cell typesCited by: 88
Author(s): Elly J. F. Vereyken, Priscilla Heijnen, Wia Baron, Helga E. de Vries, Christine D. Dijkstra, Charlotte E. Teunissen
Software Mentions: 1
Published: over 13 years ago
10.1186/1471-2253-14-111
Can serum L-lactate, D-lactate, creatine kinase and I-FABP be used as diagnostic markers in critically ill patients suspected for bowel ischemiaCited by: 34
Author(s): Peter H. J. van der Voort, Berit Westra, J. P. J. Wester, Rob J. Bosman, Ilse van Stijn, Inez-Anne Haagen, Ference J. Loupatty, Saskia Rijkenberg
Software Mentions: 1
Published: almost 10 years ago
10.1155/2013/567435
Transcriptionally Repressive Chromatin Remodelling and CpG Methylation in the Presence of Expanded CTG-Repeats at the DM1 LocusCited by: 42
Author(s): J.T. Brouwer, Audrey Huguet, Annie Nicole, Arnold Münnich, Geneviève Gourdon
Software Mentions: 1
Published: almost 12 years ago
10.1186/s12879-020-05248-4
Point-of-care thrombocyte function testing using multiple-electrode aggregometry in dengue patients: an explorative studyCited by: 4
Author(s): Wesley de Jong, Tri Pudy Asmarawati, Inge Verbeek, Musofa Rusli, Usman Hadi, Eric C. M. Van Gorp, Marco Goeijenbier
Software Mentions: 1
Published: over 4 years ago
10.1186/1471-2199-14-21
Reference loci for RT-qPCR analysis of differentiating human embryonic stem cellsCited by: 28
Author(s): Liesbeth Vossaert, Thomas O’Leary, Christophe Van Neste, Björn Heindryckx, Jo Vandesompele, Petra De Sutter, Dieter Deforce
Software Mentions: 1
Published: about 11 years ago
10.1186/1471-2474-14-235
Mitochondrial respiratory chain dysfunction modulates metalloproteases -1, -3 and -13 in human normal chondrocytes in cultureCited by: 44
Author(s): Berta Cillero‐Pastor, Ignacio Rego‐Pérez, N. Oreiro, C. Fernández-López, Francisco J. Blanco
Software Mentions: 1
Published: about 11 years ago
10.1186/s12870-015-0635-x
A transposable element insertion in the susceptibility gene CsaMLO8 results in hypocotyl resistance to powdery mildew in cucumberCited by: 75
Author(s): Jeroen A. Berg, Michela Appiano, Miguel Santillán Martínez, Freddy W. K. Hermans, Wim H. Vriezen, Richard G. F. Visser, Yuling Bai, Henk J. Schouten
Software Mentions: 1
Published: about 9 years ago
10.1155/2014/754596
Alterations of the Myovesical Plexus of the Human Overactive DetrusorCited by: 3
Author(s): K.A.J. Kuijpers, John Heesakkers, Jack A. Schalken
Software Mentions: 1
Published: almost 11 years ago
10.1007/s00428-020-02848-y
Influence of preanalytical variables on performance of delta-like protein 3 (DLL3) predictive immunohistochemistryCited by: 1
Author(s): Teodora Radonic, Sylvia Duin, Wim Vos, Pim C. Kortman, Aeilko H. Zwinderman, Erik Thunnissen
Software Mentions: 1
Published: over 4 years ago
10.1186/1746-4811-3-11
Chromatin immunoprecipitation: optimization, quantitative analysis and data normalizationCited by: 430
Author(s): Max Haring, Sascha Offermann, Tanja Danker, Ina Horst, Christoph Peterhänsel, Maike Stam
Software Mentions: 1
Published: about 17 years ago
10.1371/currents.md.cbf1d33001de80923ce674302cad7925
Generation of Embryonic Stem Cells and Mice for Duchenne ResearchCited by: 7
Author(s): Marcel H. A. M. Veltrop, Jos van der Kaa, Jill Claassens, Laura Van de Vliet, Sjef Verbeek, Annemieke Aartsma‐Rus
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pgen.1006765
Suspected Lynch syndrome associated MSH6 variants: A functional assay to determine their pathogenicityCited by: 14
Author(s): Hellen Houlleberghs, Angelique J. Goverde, Jarnick Lusseveld, Marleen Dekker, Marco J. Bruno, Fred H. Menko, Arjen R. Mensenkamp, Manon C.W. Spaander, Anja Wagner, Robert M.W. Hofstra, Hein te Riele
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0055592
Bone Marrow Alterations and Lower Endothelial Progenitor Cell Numbers in Critical Limb Ischemia PatientsCited by: 62
Author(s): Martin Teraa, Ralf W. Sprengers, Peter E. Westerweel, Hendrik Gremmels, Marie‐José Goumans, Tom Teerlink, Frans L. Moll, Marianne C. Verhaar
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0002322
The Polycomb Protein and E3 Ubiquitin Ligase Ring1B Harbors an IRES in its Highly Conserved 5′ UTRCited by: 10
Author(s): Erwin Boutsma, Sonja Noback, Maarten van Lohuizen
Software Mentions: 1
Published: over 16 years ago
10.1371/journal.pone.0079259
Novel B19-Like Parvovirus in the Brain of a Harbor SealCited by: 20
Author(s): Rogier Bodewes, Ana Rubio García, Lidewij Wiersma, Sarah Getu, Martijn Beukers, Claudia M. E. Schapendonk, Peter R. W. A. van Run, Marco W. G. van de Bildt, Marjolein J Poen, Nynke Osinga, Guillermo J. Sánchez Contreras, Thijs Kuiken, Saskia L. Smits, Albert D. M. E. Osterhaus
Software Mentions: 1
Published: about 11 years ago