Ecosyste.ms: Papers

10.1371/journal.pone.0195970

The importance of regional models in assessing canine cancer incidences in Switzerland
Cited by: 4
Author(s): Gianluca Boo, Stefan Leyk, Chris Brunsdon, Ricarda Graf, Andreas Pospischil, Sara Irina Fabrikant
Software Mentions: 18
Published: over 6 years ago

10.7717/peerj.11177

Predicting migration routes for three species of migratory bats using species distribution models
Cited by: 13
Author(s): Jamin G. Wieringa, Bryan C. Carstens, H. Lisle Gibbs
Software Mentions: 16
Published: over 3 years ago

10.3389/fvets.2019.00045

Exploring Uncertainty in Canine Cancer Data Sources Through Dasymetric Refinement
Cited by: 5
Author(s): Gianluca Boo, Stefan Leyk, Sara Irina Fabrikant, Ricarda Graf, Andreas Pospischil
Software Mentions: 13
Published: almost 6 years ago

10.7717/peerj.5518

Random forest as a generic framework for predictive modeling of spatial and spatio-temporal variables
Cited by: 419
Author(s): Tomislav Hengl, Madlene Nussbaum, Marvin N. Wright, G.B.M. Heuvelink, Benedikt Gräler
Software Mentions: 13
Published: over 6 years ago

10.1111/eva.13274

SNP analyses and acoustic tagging reveal multiple origins and widespread dispersal of invasive brown trout in the Falkland Islands
Cited by: 2
Author(s): Jessica F. Minett, Carlos García de Leániz, Halina Sobolewska, Paul Brickle, Glenn T. Crossin, Sofía Consuegra
Software Mentions: 11
Published: over 3 years ago

10.1002/ece3.2100

Phylogenetic assemblage structure of North American trees is more strongly shaped by glacial-interglacial climate variability in gymnosperms than in angiosperms
Cited by: 39
Author(s): Ziyu Ma, Brody Sandel, Jens‐Christian Svenning
Software Mentions: 10
Published: over 8 years ago

10.1371/journal.pone.0179570

Multi-level, multi-scale resource selection functions and resistance surfaces for conservation planning: Pumas as a case study
Cited by: 77
Author(s): Katherine A. Zeller, T. Winston Vickers, Holly B. Ernest, Walter M. Boyce
Software Mentions: 9
Published: over 7 years ago

10.1371/journal.pone.0164816

A Multi-Faceted Approach to Analyse the Effects of Environmental Variables on Geographic Range and Genetic Structure of a Perennial Psammophilous Geophyte: The Case of the Sea Daffodil Pancratium maritimum L. in the Mediterranean Basin
Cited by: 12
Author(s): Olga De Castro, Antonietta Di Maio, Mirko Di Febbraro, Gennaro Imparato, Michele Innangi, Errol Véla, Bruno Menale
Software Mentions: 8
Published: about 8 years ago

10.1371/journal.pone.0062127

Home Range Utilisation and Long-Range Movement of Estuarine Crocodiles during the Breeding and Nesting Season
Cited by: 59
Author(s): Hamish A. Campbell, Ross G. Dwyer, Terri R. Irwin, Craig E. Franklin
Software Mentions: 8
Published: over 11 years ago

10.1002/ece3.4296

Landscape genetics identifies streams and drainage infrastructure as dispersal corridors for an endangered wetland bird
Cited by: 12
Author(s): Charles B. van Rees, J. Michael Reed, R. E. Wilson, Jared G. Underwood, Sarah A. Sonsthagen
Software Mentions: 7
Published: over 6 years ago

10.1002/ece3.4994

Sampling related individuals within ponds biases estimates of population structure in a pond‐breeding amphibian
Cited by: 23
Author(s): Kyle A. O’Connell, Kevin P. Mulder, Jose A. Maldonado, Kathleen L. Currie, Dennis M. Ferraro
Software Mentions: 7
Published: almost 6 years ago

10.3389/fgene.2020.00307

Alternative Quantifications of Landscape Complementation to Model Gene Flow in Banded Longhorn Beetles [Typocerus v. velutinus (Olivier)]
Cited by: 2
Author(s): Richard Borthwick, Alida de Flamingh, Maximillian H.K. Hesselbarth, Anjana Parandhaman, Helene H. Wagner, Hossam Eldien M. Abdel Moniem
Software Mentions: 6
Published: over 4 years ago

10.1002/ece3.5489

Effects of contemporary agricultural land cover on Colorado potato beetle genetic differentiation in the Columbia Basin and Central Sands
Cited by: 16
Author(s): Michael S. Crossley, Silvia I. Rondon, Sean D. Schoville
Software Mentions: 6
Published: over 5 years ago

10.7717/peerj.10622

Stage 1 registered report: spatiotemporal patterns of the COVID-19 epidemic in Mexico at the municipality level
Cited by: 1
Author(s): Jean-François Mas
Software Mentions: 6
Published: almost 4 years ago

10.1098/rsos.160350

Two species of Southeast Asian cats in the genus <i>Catopuma</i> with diverging histories: an island endemic forest specialist and a widespread habitat generalist
Cited by: 13
Author(s): Riddhi P. Patel, Daniel W. Förster, Andrew C. Kitchener, Mark D. Rayan, Shariff W. Mohamed, Laura Werner, Dorina Lenz, Hans Pfestorf, Stephanie Kramer‐Schadt, Viktoriia Radchuk, Jörns Fickel, Andreas Wilting
Software Mentions: 6
Published: about 8 years ago

10.1371/journal.pone.0148016

Diversity and Biogeography of Bathyal and Abyssal Seafloor Bacteria
Cited by: 99
Author(s): Christina Bienhold, Lucie Zinger, Antje Boetius, Alban Ramette
Software Mentions: 6
Published: almost 9 years ago

10.1371/journal.pone.0125009

Incidence and Risk Factors of Childhood Pneumonia-Like Episodes in Biliran Island, Philippines—A Community-Based Study
Cited by: 28
Author(s): Hisato Kosai, Raita Tamaki, Mayuko Saito, Kentaro Tohma, Portia Alday, Alvin G. Tan, Marianette T. Inobaya, Akira Suzuki, Taro Kamigaki, Soccoro Lupisan, Veronica Tallo, Hitoshi Oshitani
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0174212

The relationship between least-cost and resistance distance
Cited by: 38
Author(s): Robby R. Marrotte, Jeff Bowman
Software Mentions: 5
Published: over 7 years ago

10.1126/sciadv.abe2592

Aquaculture mediates global transmission of a viral pathogen to wild salmon
Cited by: 24
Author(s): Gideon Mordecai, Kristina M. Miller, Arthur L. Bass, Andrew Bateman, Amy K. Teffer, Jessica M. Caleta, Emiliano Di Cicco, Angela D. Schulze, Karia H. Kaukinen, Shaorong Li, Amy Tabata, Bradley R. Jones, Tobi J. Ming, Jeffrey B. Joy
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0073051

marmap: A Package for Importing, Plotting and Analyzing Bathymetric and Topographic Data in R
Cited by: 387
Author(s): Eric Pante, Benoît Simon-Bouhet
Software Mentions: 5
Published: over 11 years ago

10.1002/ece3.2800

Responses of coral reef fishes to past climate changes are related to life‐history traits
Cited by: 15
Author(s): Eduardo Ottimofiore, Camille Albouy, Fabien Leprieur, Patrice Descombes, Michel Kulbicki, David Mouillot, Valeriano Parravicini, Loïc Pellissier
Software Mentions: 5
Published: almost 8 years ago

10.1002/ece3.4952

Population genomics of rapidly invading lionfish in the Caribbean reveals signals of range expansion in the absence of spatial population structure
Cited by: 20
Author(s): Eleanor K. Bors, Santiago Herrera, James A. Morris, Timothy M. Shank
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-021-90744-z

Directional changes in Levallois core technologies between Eastern Africa, Arabia, and the Levant during MIS 5
Cited by: 3
Author(s): James Blinkhorn, Huw S. Groucutt, Eleanor M. L. Scerri, Michael D. Petraglia, Simon Blockley
Software Mentions: 5
Published: over 3 years ago

10.1002/ece3.660

Investigating sex-specific dynamics using uniparental markers: West New Guinea as a case study
Cited by: 4
Author(s): Stefano Mona, Ernest Mordret, Michel Veuille, Mila Tommaseo-Ponzetta
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pntd.0008096

Quantifying geographic accessibility to improve efficiency of entomological monitoring
Cited by: 6
Author(s): Joshua Longbottom, Ana Krause, Stephen J. Torr, Michelle C. Stanton
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0219981

Pathogen invasion history elucidates contemporary host pathogen dynamics
Cited by: 14
Author(s): Vance T. Vredenburg, Samuel V. G. McNally, Hasan Sulaeman, Helen Butler, Tiffany A. Yap, Michelle S. Koo, Dirk S. Schmeller, Celeste Dodge, Tina L. Cheng, Gordon Lau, Cheryl J. Briggs
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0239149

Fertilizer profitability for smallholder maize farmers in Tanzania: A spatially-explicit ex ante analysis
Cited by: 5
Author(s): Sebastian Palmas, Jordan Chamberlin
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2018.03356

Unicellular Cyanobacteria Are Important Components of Phytoplankton Communities in Australia’s Northern Oceanic Ecoregions
Cited by: 6
Author(s): Lisa R. Moore, Tianqing Huang, Martin Ostrowski, Sophie Mazard, Sheemal S. Kumar, Hasinika K. A. H. Gamage, Mark V. Brown, Lauren F. Messer, Justin R. Seymour, Ian T. Paulsen
Software Mentions: 4
Published: almost 6 years ago

10.3389/fvets.2019.00481

Infectious Salmon Anemia and Farm-Level Culling Strategies
Cited by: 8
Author(s): Lars Qviller, Anja Bråthen Kristoffersen, Trude Marie Lyngstad, Atle Lillehaug
Software Mentions: 4
Published: almost 5 years ago

10.1098/rsos.171178

Defining the risk landscape in the context of pathogen pollution: <i>Toxoplasma gondii</i> in sea otters along the Pacific Rim
Cited by: 19
Author(s): Tristan L. Burgess, M. Tim Tinker, Melissa A. Miller, James L. Bodkin, Michael J. Murray, Justin A. Saarinen, Linda M. Nichol, Shawn Larson, Patricia A. Conrad, Christine K. Johnson
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-018-29982-7

The influence of latitude, geographic distance, and habitat discontinuities on genetic variation in a high latitude montane species
Cited by: 13
Author(s): John A. Hindley, Brendan A. Graham, Paulo C. Pulgarín‐R, Theresa M. Burg
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0068646

High and Distinct Range-Edge Genetic Diversity despite Local Bottlenecks
Cited by: 79
Author(s): Jorge Assis, Nelson Castilho Coelho, Filipe Alberto, Myriam Valéro, Pete Raimondi, Dan C. Reed, Ester Á. Serrão
Software Mentions: 3
Published: over 11 years ago

10.1038/s41597-019-0265-5

A suite of global accessibility indicators
Cited by: 50
Author(s): Andy Nelson, Daniel J. Weiss, Jacob van Etten, Andrea Cattaneo, Theresa McMenomy, Jawoo Koo
Software Mentions: 3
Published: about 5 years ago

10.3390/jof7030182

Landscape Genetic Connectivity and Evidence for Recombination in the North American Population of the White-Nose Syndrome Pathogen, Pseudogymnoascus destructans
Cited by: 1
Author(s): Adrian Forsythe, Karen J. Vanderwolf, Jianping Xu
Software Mentions: 3
Published: almost 4 years ago

10.1186/1475-2875-13-421

Fine-scale malaria risk mapping from routine aggregated case data
Cited by: 60
Author(s): Hugh J. W. Sturrock, Justin M. Cohen, Petr Keil, Andrew J. Tatem, Arnaud Le Menach, Nyasatu Ntshalintshali, Michelle S. Hsiang, Roland Gosling
Software Mentions: 3
Published: about 10 years ago

10.1111/eva.12627

Quantifying functional connectivity: The role of breeding habitat, abundance, and landscape features on range‐wide gene flow in sage‐grouse
Cited by: 24
Author(s): Jeffrey R. Row, Kevin E. Doherty, Todd B. Cross, Michael K. Schwartz, Sara J. Oyler‐McCance, Dave E. Naugle, Steven T. Knick, Bradley C. Fedy
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0178239

Considering reefscape configuration and composition in biophysical models advance seascape genetics
Cited by: 16
Author(s): Simon Van Wynsberge, Serge Andréfouët, Nabila Gaertner‐Mazouni, Josina Tiavouane, Daphné Grulois, Jérôme Lefèvre, Malin L. Pinsky, Cécile Fauvelot
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0176960

Simulating the spread of selection-driven genotypes using landscape resistance models for desert bighorn sheep
Cited by: 20
Author(s): Tyler G. Creech, Clinton W. Epps, Erin L. Landguth, John D. Wehausen, Rachel S. Crowhurst, Brandon Holton, Ryan J. Monello
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.4135

Multi-scale and multi-site resampling of a study area in spatial genetics: implications for flying insect species
Cited by: 5
Author(s): Julien Haran, Jean‐Pierre Rossi, J. A. Pajares, Luís Bonifácio, Pedro Naves, Alain Roques, Géraldine Roux
Software Mentions: 3
Published: about 7 years ago

10.1007/s00439-016-1742-y

Complete mitochondrial genomes of Thai and Lao populations indicate an ancient origin of Austroasiatic groups and demic diffusion in the spread of Tai–Kadai languages
Cited by: 55
Author(s): Wibhu Kutanan, Jatupol Kampuansai, Metawee Srikummool, Daoroong Kangwanpong, Silvia Ghirotto, Andrea Brunelli, Mark Stoneking
Software Mentions: 3
Published: about 8 years ago

10.7717/peerj.3842

Does silvoagropecuary landscape fragmentation affect the genetic diversity of the sigmodontine rodent<i>Oligoryzomys longicaudatus</i>?
Cited by: 3
Author(s): Daniela Lazo-Cancino, Selim Musleh, Cristián E. Hernández, Eduardo L. Palma, Enrique Rodríguez‐Serrano
Software Mentions: 3
Published: about 7 years ago

10.1186/s13071-018-3189-6

Parasitic sea louse infestations on wild sea trout: separating the roles of fish farms and temperature
Cited by: 18
Author(s): Knut Wiik Vollset, Lars Qviller, Bjørnar Skår, Bjørn Torgeir Barlaup, Ian R. Dohoo
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2019.00303

Influence of the Quaternary Glacial Cycles and the Mountains on the Reticulations in the Subsection Willkommia of the Genus Centaurea
Cited by: 5
Author(s): Samira Ben-Menni Schuler, Jordi López‐Pujol, Gabriel Blanca, Roser Vilatersana, Núria Garcia‐Jacas, Víctor N. Suárez‐Santiago
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0012060

A Geospatial Modelling Approach Integrating Archaeobotany and Genetics to Trace the Origin and Dispersal of Domesticated Plants
Cited by: 52
Author(s): Jacob van Etten, Robert J. Hijmans
Software Mentions: 2
Published: over 14 years ago

10.1186/s41182-021-00338-8

Presence of dogs and proximity to a wildlife reserve increase household level risk of tungiasis in Kwale, Kenya
Cited by: 3
Author(s): Peter S. Larson, Masanobu Ono, Mwatasa Changoma, Kensuke Goto, Satoshi Kaneko, Kazuhiko Moji, Noboru Minakawa
Software Mentions: 2
Published: over 3 years ago

10.1073/pnas.1903829116

Shearwaters know the direction and distance home but fail to encode intervening obstacles after free-ranging foraging trips
Cited by: 17
Author(s): Oliver Padget, Geoffrey J. Stanley, Jay Willis, Annette L. Fayet, Sarah Bond, Louise Maurice, Akiko Shoji, Ben Dean, Holly Kirk, Ignacio Juarez-Martinez, Robin Freeman, Mark Bolton, Tim Guilford
Software Mentions: 2
Published: about 5 years ago