Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: MAD
https://packages.ecosyste.ms/registries/pypi.org/packages/MAD
Simulation of microservices architectures dynamics
7 versions
Latest release: over 8 years ago
2,762 downloads last month
Papers Mentioning MAD 45
10.1186/s12859-015-0608-y
affy2sv: an R package to pre-process Affymetrix CytoScan HD and 750K arrays for SNP, CNV, inversion and mosaicism callingCited by: 3
Author(s): Carles Hernandez‐Ferrer, Inés Quintela, Katharina Danielski, Ángel Carracedo, Luis A. Pérez‐Jurado, Juan R. González
Software Mentions: 7
Published: over 9 years ago
10.3897/zookeys.542.5975
Taxonomic revision of Afrotropical Laccophilus Leach, 1815 (Coleoptera, Dytiscidae)Cited by: 10
Author(s): Olof Biström, Anders N. Nilsson, Johannes Bergsten
Software Mentions: 5
Published: almost 9 years ago
10.7554/eLife.39911
A new experimental platform facilitates assessment of the transcriptional and chromatin landscapes of aging yeastCited by: 55
Author(s): David G. Hendrickson, Ilya Soifer, Bernd J. Wranik, Griffin Kim, Michael Robles, Patrick A. Gibney, R. Scott McIsaac
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.ppat.1000128
Vaccinia Virus Proteins A52 and B14 Share a Bcl-2–Like Fold but Have Evolved to Inhibit NF-κB rather than ApoptosisCited by: 145
Author(s): Stephen C. Graham, Mohammad W. Bahar, Samantha Cooray, Ron A.-J. Chen, Daniel M. Whalen, Nicola G. A. Abrescia, David Alderton, Raymond J. Owens, David I. Stuart, Geoffrey L. Smith, Jonathan M. Grimes
Software Mentions: 3
Published: about 16 years ago
10.1107/S1399004714009997
The structure of the cysteine protease and lectin-like domains of Cwp84, a surface layer-associated protein from<i>Clostridium difficile</i>Cited by: 15
Author(s): W.J. Bradshaw, Jonathan M. Kirby, N. Thiyagarajan, Christopher J. Chambers, Abigail H. Davies, April K. Roberts, Clifford C. Shone, K. Ravi Acharya
Software Mentions: 3
Published: over 10 years ago
10.1107/S0907444910000302
Rapid model building of β-sheets in electron-density mapsCited by: 4
Author(s): Thomas C. Terwilliger
Software Mentions: 3
Published: over 14 years ago
10.3390/ijms19082303
Genome-Wide Association Study and Selection Signatures Detect Genomic Regions Associated with Seed Yield and Oil Quality in FlaxCited by: 39
Author(s): Frank M. You, Jin Xiao, Pingchuan Li, Zhen Yao, Guanqing Jia, Ling He, Santosh Kumar, Braulio J. Soto‐Cerda, Scott Duguid, Helen Booker, K. Y. Rashid, Sylvie Cloutier
Software Mentions: 3
Published: over 6 years ago
10.1007/s10265-019-01157-z
Complex origins of chloroplast membranes with photosynthetic machineries: multiple transfers of genes from divergent organisms at different times or a single endosymbiotic event?Cited by: 22
Author(s): Naoki Sato
Software Mentions: 2
Published: almost 5 years ago
10.1107/S0907444910006335
Experimental phasing: best practice and pitfallsCited by: 42
Author(s): Airlie J. McCoy, Randy J. Read
Software Mentions: 2
Published: over 14 years ago
10.1107/S2059798317015121
An introduction to experimental phasing of macromolecules illustrated by<i>SHELX</i>; new autotracing featuresCited by: 122
Author(s): Isabel Usón, George M. Sheldrick
Software Mentions: 2
Published: almost 7 years ago
10.1107/S2059798316001042
Facilitating best practices in collecting anomalous scattering data for<i>de novo</i>structure solution at the ESRF Structural Biology BeamlinesCited by: 8
Author(s): Daniele de Sanctis, Marcus Oscarsson, А. Н. Попов, Olof Svensson, Gordon A. Leonard
Software Mentions: 2
Published: over 8 years ago
10.1186/s12864-021-07395-7
MONTAGE: a new tool for high-throughput detection of mosaic copy number variationCited by: 2
Author(s): Joseph T. Glessner, Xiao Chang, Yichuan Liu, Jin Li, Munir Khan, Zhi Wei, Patrick Sleiman, Håkon Håkonarson
Software Mentions: 2
Published: over 3 years ago
10.1186/1471-2164-14-367
Sensitive and specific detection of mosaic chromosomal abnormalities using the Parent-of-Origin-based Detection (POD) methodCited by: 22
Author(s): Joseph D. Baugher, Benjamin Baugher, Matthew D. Shirley, Jonathan Pevsner
Software Mentions: 2
Published: over 11 years ago
10.1042/BCJ20200368
Antitoxin autoregulation of <i>M. tuberculosis</i> toxin-antitoxin expression through negative cooperativity arising from multiple inverted repeat sequencesCited by: 8
Author(s): Izaak N Beck, B. F. Usher, Hannah G Hampton, Peter C. Fineran, Tim R. Blower
Software Mentions: 2
Published: over 4 years ago
10.3390/microarrays2040284
Copy Number Studies in Noisy SamplesCited by: 7
Author(s): Philip Ginsbach, Bowang Chen, Yanxiang Jiang, Stefan T. Engelter, Caspar Grond‐Ginsbach
Software Mentions: 2
Published: about 11 years ago
10.1371/journal.pone.0164045
Intensity Thresholds on Raw Acceleration Data: Euclidean Norm Minus One (ENMO) and Mean Amplitude Deviation (MAD) ApproachesCited by: 91
Author(s): Kishan Bakrania, Thomas Yates, Alex V. Rowlands, Dale W. Esliger, Sarah Bunnewell, James P. Sanders, Melanie J. Davies, Kamlesh Khunti, Charlotte L. Edwardson
Software Mentions: 2
Published: about 8 years ago
10.1371/journal.pone.0235510
Computer-based cognitive interventions in acquired brain injury: A systematic review and meta-analysis of randomized controlled trialsCited by: 12
Author(s): Rodrigo Fernández López, Adoración Antolí
Software Mentions: 2
Published: over 4 years ago
10.1186/2045-709X-20-35
The United States Chiropractic Workforce: An alternative or complement to primary care?Cited by: 11
Author(s): Matthew Davis, Todd A. MacKenzie, Ian D. Coulter, James M. Whedon, William B. Weeks
Software Mentions: 2
Published: almost 12 years ago
10.3389/fpls.2017.01636
Genetic Variability of 27 Traits in a Core Collection of Flax (Linum usitatissimum L.)Cited by: 36
Author(s): Frank M. You, Guanqing Jia, Jin Xiao, Scott Duguid, K. Y. Rashid, Helen Booker
Software Mentions: 2
Published: about 7 years ago
10.1179/0308018815Z.000000000120
Structural Biology: A Century-long Journey into an Unseen WorldCited by: 23
Author(s): Stephen Curry
Software Mentions: 2
Published: over 9 years ago
10.1038/srep25954
CNV analysis in Chinese children of mental retardation highlights a sex differentiation in parental contribution to de novo and inherited mutational burdensCited by: 19
Author(s): Binbin Wang, Taoyun Ji, Xueya Zhou, Jing Wang, Xi Wang, Jingmin Wang, Dandan Zhu, Xuejun Zhang, Pak C. Sham, Xuegong Zhang, Xu Ma, Yuwu Jiang
Software Mentions: 2
Published: over 8 years ago
10.1038/s41598-019-54267-y
Comparability of accelerometer signal aggregation metrics across placements and dominant wrist cut points for the assessment of physical activity in adultsCited by: 44
Author(s): Jairo H. Migueles, Cristina Cadenas‐Sanchez, Alex V. Rowlands, Pontus Henriksson, Eric J. Shiroma, Francisco M. Acosta, María Rodríguez-Ayllón, Irene Esteban‐Cornejo, Abel Plaza‐Florido, José J. Gil-Cosano, Ulf Ekelund, Vincent T. van Hees, Francisco B. Ortega
Software Mentions: 2
Published: almost 5 years ago
10.1128/mSystems.00606-21
Deciphering Symbiotic Interactions of “ <i>Candidatus</i> Aenigmarchaeota” with Inferred Horizontal Gene Transfers and Co-occurrence NetworksCited by: 11
Author(s): Yuxian Li, Yang-Zhi Rao, Yanling Qi, Yan-Ni Qu, Ya-Ting Chen, Jian‐Yu Jiao, Wen‐Sheng Shu, Hongchen Jiang, Brian P. Hedlund, Zheng-Shuang Hua, Wenjun Li
Software Mentions: 2
Published: about 3 years ago
10.1016/j.jmb.2010.03.043
Solution Structure and Characterisation of the Human Pyruvate Dehydrogenase Complex Core AssemblyCited by: 51
Author(s): Swetha Víjayakríshnan, Sharon M. Kelly, Robert J.C. Gilbert, Philip Callow, David Bhella, V. Trevor Forsyth, J. Gordon Lindsay, Olwyn Byron
Software Mentions: 2
Published: over 14 years ago
10.3390/ijms21051577
Genomic Prediction Accuracy of Seven Breeding Selection Traits Improved by QTL Identification in FlaxCited by: 18
Author(s): Samuel Lan, Chunfang Zheng, Kyle Hauck, Madison McCausland, Scott Duguid, Helen Booker, Sylvie Cloutier
Software Mentions: 2
Published: over 4 years ago
10.1107/S0907444999000839
Automated MAD and MIR structure solutionCited by: 2,873
Author(s): Thomas C. Terwilliger, Joel Berendzen
Software Mentions: 2
Published: over 25 years ago
10.2196/14680
Supporting the Medication Adherence of Older Mexican Adults Through External Cues Provided With Ambient Displays: Feasibility Randomized Controlled TrialCited by: 9
Author(s): Ernesto Zárate-Bravo, Juan Pablo García-Vázquez, Engracia Torres-Cervantes, Gisela Ponce y Ponce de León, Ángel G. Andrade, Maribel Valenzuela-Beltrán, Marcela D. Rodríguez
Software Mentions: 1
Published: over 4 years ago
10.1186/1471-2105-12-166
A fast and accurate method to detect allelic genomic imbalances underlying mosaic rearrangements using SNP array dataCited by: 53
Author(s): Juan R. González, Benjamín Rodríguez-Santiago, Alejandro Cáceres, Roger Piqué-Regi, Nathaniel Rothman, Stephen J. Chanock, Lluı́s Armengol, Luis A. Pérez‐Jurado
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.ppat.1002311
Distinct Single Amino Acid Replacements in the Control of Virulence Regulator Protein Differentially Impact Streptococcal PathogenesisCited by: 48
Author(s): Nicola Horstmann, Pranoti Sahasrabhojane, Bryce Suber, Muthiah Kumaraswami, Randall J. Olsen, Anthony R. Flores, James M. Musser, Richard G. Brennan, Samuel A. Shelburne
Software Mentions: 1
Published: about 13 years ago
10.3390/rs12101630
Assessment of the GOES-16 Clear Sky Mask Product over the Contiguous USA Using CALIPSO RetrievalsCited by: 10
Author(s): Pedro A. Jiménez
Software Mentions: 1
Published: over 4 years ago
10.1038/sdata.2017.188
Two-colour serial femtosecond crystallography dataset from gadoteridol-derivatized lysozyme for MAD phasingCited by: 3
Author(s): A. Gorel, K. Motomura, H. Fukuzawa, R. Bruce Doak, Marie Luise Grünbein, M. Hilpert, Ituro Inoue, Marco Kloos, Gabriela Nass Kovács, Eriko Nango, Karol Nass, C.M. Roome, Robert L. Shoeman, Rie Tanaka, Kensuke Tono, L. Foucar, Yasumasa Joti, Makina Yabashi, So Iwata, Kiyoshi Ueda, Thomas R. M. Barends, Ilme Schlichting
Software Mentions: 1
Published: almost 7 years ago
10.3390/ijms20215306
The Significance of the Intrinsically Disordered Regions for the Functions of the bHLH Transcription FactorsCited by: 25
Author(s): Aneta Tarczewska, Beata Greb‐Markiewicz
Software Mentions: 1
Published: about 5 years ago
10.1186/s12859-021-03956-5
Root Digger: a root placement program for phylogenetic treesCited by: 17
Author(s): Ben Bettisworth, Alexandros Stamatakis
Software Mentions: 1
Published: over 3 years ago
10.3897/BDJ.4.e10948
New records and detailed distribution and abundance of selected arthropod species collected between 1999 and 2011 in Azorean native forestsCited by: 11
Author(s): Paulo A. V. Borges, Clara Gaspar, Luís C Crespo, François Rigal, Pedro Cardoso, Fernando Pereira, Carla Rego, Isabel R. Amorim, Catarina Melo, Carlos A. S. Aguiar, Genage André, Enesima P. Mendonca, Sérvio Pontes Ribeiro, Joaquín Hortal, Ana M. C. Santos, Luís Barcelos, Henrik Enghoff, Volker Mahnert, Margarida T. Pita, Jordi Ribes, Arturo Baz, António Bivar de Sousa, Virgílio Vieira, Jörg Wunderlich, Aristeidis Parmakelis, Robert J. Whittaker, J. A. Quartau, Artur R. M. Serrano, Kostas A. Triantis
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41598-020-73168-z
Toward monochromated sub-nanometer UEM and femtosecond UEDCited by: 6
Author(s): Xi Yang, Weishi Wan, Lijun Wu, Victor Smaluk, Timur Shaftan, Yimei Zhu
Software Mentions: 1
Published: about 4 years ago
10.3390/microorganisms9061290
Genome-Wide Metabolic Reconstruction of the Synthesis of Polyhydroxyalkanoates from Sugars and Fatty Acids by Burkholderia Sensu Lato SpeciesCited by: 16
Author(s): Natalia Alvarez-Santullano, Pamela Villegas, Mario Sepúlveda Mardones, Roberto E. Durán, Raúl Donoso, A. Gonzalez, Claudia Sanhueza, Rodrigo Navia, Francisca Acevedo, Danilo Pérez‐Pantoja, Michael Seeger
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2148-12-59
Perforin evolved from a gene duplication of MPEG1, followed by a complex pattern of gene gain and loss within EuteleostomiCited by: 41
Author(s): Michael D’Angelo, Michelle Anne Dunstone, James C. Whisstock, Joseph A. Trapani, Phillip I. Bird
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0010049
MrGrid: A Portable Grid Based Molecular Replacement PipelineCited by: 2
Author(s): J.W. Schmidberger, Mark A. Bate, Cyril Reboul, G. S. Androulakis, Jennifer M. N. Phan, James C. Whisstock, Wojtek Goscinski, David Abramson, Ashley M. Buckle
Software Mentions: 1
Published: over 14 years ago
10.3390/s17112473
DEEP-SEE: Joint Object Detection, Tracking and Recognition with Application to Visually Impaired Navigational AssistanceCited by: 51
Author(s): Ruxandra Țapu, Bogdan Mocanu, Titus Zaharia
Software Mentions: 1
Published: about 7 years ago
10.18632/aging.103315
Chronic polypharmacy impairs explorative behavior and reduces synaptic functions in young adult miceCited by: 9
Author(s): Francesca Eroli, Kristina Johnell, María Latorre-Leal, Chiara Adamo, Sarah N. Hilmer, Jonas W. Wastesson, Ángel Cedazo-Minguez, Silvia Maioli
Software Mentions: 1
Published: over 4 years ago
10.1007/s40828-018-0064-1
Polyoxometalates: more than a phasing tool in protein crystallographyCited by: 34
Author(s): Aleksandar Bijelic, Annette Rompel
Software Mentions: 1
Published: about 6 years ago
10.3390/ijerph16234715
A Biophysical Analysis on the Arm Stroke Efficiency in Front Crawl Swimming: Comparing Methods and Determining the Main Performance PredictorsCited by: 19
Author(s): Ricardo Peterson Silveira, Susana Soares, Rodrigo Zacca, Francisco Alves, Ricardo J. Fernandes, Flávio Antônio de Souza Castro, João Paulo Vilas-Boas
Software Mentions: 1
Published: almost 5 years ago
10.3389/fphys.2016.00681
Measuring Physical Activity in Free-Living Conditions—Comparison of Three Accelerometry-Based MethodsCited by: 36
Author(s): Anna‐Maiju Leinonen, Riikka Ahola, Janne Kulmala, Harto Hakonen, Henri Vähä‐Ypyä, Karl‐Heinz Herzig, Juha Auvinen, Sirkka Keinänen‐Kiukaanniemi, Harri Sievänen, Tuija Tammelin, Raija Korpelainen, Timo Jämsä
Software Mentions: 1
Published: almost 8 years ago
10.3390/ijerph181910277
Prevalence of Obstructive Sleep Apnea Syndrome: A Single-Center Retrospective StudyCited by: 16
Author(s): Manlio Santilli, Eugenio Manciocchi, Gianmaria D’Addazio, Erica Di Maria, Michele D’Attilio, Beatrice Femminella, Bruna Sinjari
Software Mentions: 1
Published: about 3 years ago
10.1093/gbe/evz034
Investigating the Origins of Membrane Phospholipid Biosynthesis Genes Using Outgroup-Free RootingCited by: 27
Author(s): Gareth A. Coleman, Richard D. Pancost, Tom A. Williams
Software Mentions: 1
Published: over 5 years ago