pypi: MAD | Projects | Ecosyste.ms: Papers

10.1186/s12859-015-0608-y

affy2sv: an R package to pre-process Affymetrix CytoScan HD and 750K arrays for SNP, CNV, inversion and mosaicism calling
Cited by: 3
Author(s): Carles Hernandez‐Ferrer, Inés Quintela, Katharina Danielski, Ángel Carracedo, Luis A. Pérez‐Jurado, Juan R. González
Software Mentions: 7
Published: over 9 years ago

10.3897/zookeys.542.5975

Taxonomic revision of Afrotropical Laccophilus Leach, 1815 (Coleoptera, Dytiscidae)
Cited by: 10
Author(s): Olof Biström, Anders N. Nilsson, Johannes Bergsten
Software Mentions: 5
Published: almost 9 years ago

10.7554/eLife.39911

A new experimental platform facilitates assessment of the transcriptional and chromatin landscapes of aging yeast
Cited by: 55
Author(s): David G. Hendrickson, Ilya Soifer, Bernd J. Wranik, Griffin Kim, Michael Robles, Patrick A. Gibney, R. Scott McIsaac
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.ppat.1000128

Vaccinia Virus Proteins A52 and B14 Share a Bcl-2–Like Fold but Have Evolved to Inhibit NF-κB rather than Apoptosis
Cited by: 145
Author(s): Stephen C. Graham, Mohammad W. Bahar, Samantha Cooray, Ron A.-J. Chen, Daniel M. Whalen, Nicola G. A. Abrescia, David Alderton, Raymond J. Owens, David I. Stuart, Geoffrey L. Smith, Jonathan M. Grimes
Software Mentions: 3
Published: over 16 years ago

10.1107/S1399004714009997

The structure of the cysteine protease and lectin-like domains of Cwp84, a surface layer-associated protein fromClostridium difficile
Cited by: 15
Author(s): W.J. Bradshaw, Jonathan M. Kirby, N. Thiyagarajan, Christopher J. Chambers, Abigail H. Davies, April K. Roberts, Clifford C. Shone, K. Ravi Acharya
Software Mentions: 3
Published: over 10 years ago

10.1107/S0907444910000302

Rapid model building of β-sheets in electron-density maps
Cited by: 4
Author(s): Thomas C. Terwilliger
Software Mentions: 3
Published: almost 15 years ago

10.3390/ijms19082303

Genome-Wide Association Study and Selection Signatures Detect Genomic Regions Associated with Seed Yield and Oil Quality in Flax
Cited by: 39
Author(s): Frank M. You, Jin Xiao, Pingchuan Li, Zhen Yao, Guanqing Jia, Ling He, Santosh Kumar, Braulio J. Soto‐Cerda, Scott Duguid, Helen Booker, K. Y. Rashid, Sylvie Cloutier
Software Mentions: 3
Published: over 6 years ago

10.1007/s10265-019-01157-z

Complex origins of chloroplast membranes with photosynthetic machineries: multiple transfers of genes from divergent organisms at different times or a single endosymbiotic event?
Cited by: 22
Author(s): Naoki Sato
Software Mentions: 2
Published: almost 5 years ago

10.1107/S0907444910006335

Experimental phasing: best practice and pitfalls
Cited by: 42
Author(s): Airlie J. McCoy, Randy J. Read
Software Mentions: 2
Published: over 14 years ago

10.1107/S2059798317015121

An introduction to experimental phasing of macromolecules illustrated bySHELX; new autotracing features
Cited by: 122
Author(s): Isabel Usón, George M. Sheldrick
Software Mentions: 2
Published: almost 7 years ago

10.1107/S2059798316001042

Facilitating best practices in collecting anomalous scattering data forde novostructure solution at the ESRF Structural Biology Beamlines
Cited by: 8
Author(s): Daniele de Sanctis, Marcus Oscarsson, А. Н. Попов, Olof Svensson, Gordon A. Leonard
Software Mentions: 2
Published: over 8 years ago

10.1186/s12864-021-07395-7

MONTAGE: a new tool for high-throughput detection of mosaic copy number variation
Cited by: 2
Author(s): Joseph T. Glessner, Xiao Chang, Yichuan Liu, Jin Li, Munir Khan, Zhi Wei, Patrick Sleiman, Håkon Håkonarson
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2164-14-367

Sensitive and specific detection of mosaic chromosomal abnormalities using the Parent-of-Origin-based Detection (POD) method
Cited by: 22
Author(s): Joseph D. Baugher, Benjamin Baugher, Matthew D. Shirley, Jonathan Pevsner
Software Mentions: 2
Published: over 11 years ago

10.1042/BCJ20200368

Antitoxin autoregulation of M. tuberculosis toxin-antitoxin expression through negative cooperativity arising from multiple inverted repeat sequences
Cited by: 8
Author(s): Izaak N Beck, B. F. Usher, Hannah G Hampton, Peter C. Fineran, Tim R. Blower
Software Mentions: 2
Published: over 4 years ago

10.3390/microarrays2040284

Copy Number Studies in Noisy Samples
Cited by: 7
Author(s): Philip Ginsbach, Bowang Chen, Yanxiang Jiang, Stefan T. Engelter, Caspar Grond‐Ginsbach
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0164045

Intensity Thresholds on Raw Acceleration Data: Euclidean Norm Minus One (ENMO) and Mean Amplitude Deviation (MAD) Approaches
Cited by: 91
Author(s): Kishan Bakrania, Thomas Yates, Alex V. Rowlands, Dale W. Esliger, Sarah Bunnewell, James P. Sanders, Melanie J. Davies, Kamlesh Khunti, Charlotte L. Edwardson
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0235510

Computer-based cognitive interventions in acquired brain injury: A systematic review and meta-analysis of randomized controlled trials
Cited by: 12
Author(s): Rodrigo Fernández López, Adoración Antolí
Software Mentions: 2
Published: over 4 years ago

10.1186/2045-709X-20-35

The United States Chiropractic Workforce: An alternative or complement to primary care?
Cited by: 11
Author(s): Matthew Davis, Todd A. MacKenzie, Ian D. Coulter, James M. Whedon, William B. Weeks
Software Mentions: 2
Published: about 12 years ago

10.3389/fpls.2017.01636

Genetic Variability of 27 Traits in a Core Collection of Flax (Linum usitatissimum L.)
Cited by: 36
Author(s): Frank M. You, Guanqing Jia, Jin Xiao, Scott Duguid, K. Y. Rashid, Helen Booker
Software Mentions: 2
Published: about 7 years ago

10.1179/0308018815Z.000000000120

Structural Biology: A Century-long Journey into an Unseen World
Cited by: 23
Author(s): Stephen Curry
Software Mentions: 2
Published: over 9 years ago

10.1038/srep25954

CNV analysis in Chinese children of mental retardation highlights a sex differentiation in parental contribution to de novo and inherited mutational burdens
Cited by: 19
Author(s): Binbin Wang, Taoyun Ji, Xueya Zhou, Jing Wang, Xi Wang, Jingmin Wang, Dandan Zhu, Xuejun Zhang, Pak C. Sham, Xuegong Zhang, Xu Ma, Yuwu Jiang
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-019-54267-y

Comparability of accelerometer signal aggregation metrics across placements and dominant wrist cut points for the assessment of physical activity in adults
Cited by: 44
Author(s): Jairo H. Migueles, Cristina Cadenas‐Sanchez, Alex V. Rowlands, Pontus Henriksson, Eric J. Shiroma, Francisco M. Acosta, María Rodríguez-Ayllón, Irene Esteban‐Cornejo, Abel Plaza‐Florido, José J. Gil-Cosano, Ulf Ekelund, Vincent T. van Hees, Francisco B. Ortega
Software Mentions: 2
Published: almost 5 years ago

10.1128/mSystems.00606-21

Deciphering Symbiotic Interactions of “ Candidatus Aenigmarchaeota” with Inferred Horizontal Gene Transfers and Co-occurrence Networks
Cited by: 11
Author(s): Yuxian Li, Yang-Zhi Rao, Yanling Qi, Yan-Ni Qu, Ya-Ting Chen, Jian‐Yu Jiao, Wen‐Sheng Shu, Hongchen Jiang, Brian P. Hedlund, Zheng-Shuang Hua, Wenjun Li
Software Mentions: 2
Published: about 3 years ago

10.1016/j.jmb.2010.03.043

Solution Structure and Characterisation of the Human Pyruvate Dehydrogenase Complex Core Assembly
Cited by: 51
Author(s): Swetha Víjayakríshnan, Sharon M. Kelly, Robert J.C. Gilbert, Philip Callow, David Bhella, V. Trevor Forsyth, J. Gordon Lindsay, Olwyn Byron
Software Mentions: 2
Published: over 14 years ago

10.3390/ijms21051577

Genomic Prediction Accuracy of Seven Breeding Selection Traits Improved by QTL Identification in Flax
Cited by: 18
Author(s): Samuel Lan, Chunfang Zheng, Kyle Hauck, Madison McCausland, Scott Duguid, Helen Booker, Sylvie Cloutier
Software Mentions: 2
Published: over 4 years ago

10.1107/S0907444999000839

Automated MAD and MIR structure solution
Cited by: 2,873
Author(s): Thomas C. Terwilliger, Joel Berendzen
Software Mentions: 2
Published: over 25 years ago

10.2196/14680

Supporting the Medication Adherence of Older Mexican Adults Through External Cues Provided With Ambient Displays: Feasibility Randomized Controlled Trial
Cited by: 9
Author(s): Ernesto Zárate-Bravo, Juan Pablo García-Vázquez, Engracia Torres-Cervantes, Gisela Ponce y Ponce de León, Ángel G. Andrade, Maribel Valenzuela-Beltrán, Marcela D. Rodríguez
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2105-12-166

A fast and accurate method to detect allelic genomic imbalances underlying mosaic rearrangements using SNP array data
Cited by: 53
Author(s): Juan R. González, Benjamín Rodríguez-Santiago, Alejandro Cáceres, Roger Piqué-Regi, Nathaniel Rothman, Stephen J. Chanock, Lluı́s Armengol, Luis A. Pérez‐Jurado
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1002311

Distinct Single Amino Acid Replacements in the Control of Virulence Regulator Protein Differentially Impact Streptococcal Pathogenesis
Cited by: 48
Author(s): Nicola Horstmann, Pranoti Sahasrabhojane, Bryce Suber, Muthiah Kumaraswami, Randall J. Olsen, Anthony R. Flores, James M. Musser, Richard G. Brennan, Samuel A. Shelburne
Software Mentions: 1
Published: about 13 years ago

10.3390/rs12101630

Assessment of the GOES-16 Clear Sky Mask Product over the Contiguous USA Using CALIPSO Retrievals
Cited by: 10
Author(s): Pedro A. Jiménez
Software Mentions: 1
Published: over 4 years ago

10.1038/sdata.2017.188

Two-colour serial femtosecond crystallography dataset from gadoteridol-derivatized lysozyme for MAD phasing
Cited by: 3
Author(s): A. Gorel, K. Motomura, H. Fukuzawa, R. Bruce Doak, Marie Luise Grünbein, M. Hilpert, Ituro Inoue, Marco Kloos, Gabriela Nass Kovács, Eriko Nango, Karol Nass, C.M. Roome, Robert L. Shoeman, Rie Tanaka, Kensuke Tono, L. Foucar, Yasumasa Joti, Makina Yabashi, So Iwata, Kiyoshi Ueda, Thomas R. M. Barends, Ilme Schlichting
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20215306

The Significance of the Intrinsically Disordered Regions for the Functions of the bHLH Transcription Factors
Cited by: 25
Author(s): Aneta Tarczewska, Beata Greb‐Markiewicz
Software Mentions: 1
Published: about 5 years ago

10.1186/s12859-021-03956-5

Root Digger: a root placement program for phylogenetic trees
Cited by: 17
Author(s): Ben Bettisworth, Alexandros Stamatakis
Software Mentions: 1
Published: over 3 years ago

10.3897/BDJ.4.e10948

New records and detailed distribution and abundance of selected arthropod species collected between 1999 and 2011 in Azorean native forests
Cited by: 11
Author(s): Paulo A. V. Borges, Clara Gaspar, Luís C Crespo, François Rigal, Pedro Cardoso, Fernando Pereira, Carla Rego, Isabel R. Amorim, Catarina Melo, Carlos A. S. Aguiar, Genage André, Enesima P. Mendonca, Sérvio Pontes Ribeiro, Joaquín Hortal, Ana M. C. Santos, Luís Barcelos, Henrik Enghoff, Volker Mahnert, Margarida T. Pita, Jordi Ribes, Arturo Baz, António Bivar de Sousa, Virgílio Vieira, Jörg Wunderlich, Aristeidis Parmakelis, Robert J. Whittaker, J. A. Quartau, Artur R. M. Serrano, Kostas A. Triantis
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-020-73168-z

Toward monochromated sub-nanometer UEM and femtosecond UED
Cited by: 6
Author(s): Xi Yang, Weishi Wan, Lijun Wu, Victor Smaluk, Timur Shaftan, Yimei Zhu
Software Mentions: 1
Published: about 4 years ago

10.3390/microorganisms9061290

Genome-Wide Metabolic Reconstruction of the Synthesis of Polyhydroxyalkanoates from Sugars and Fatty Acids by Burkholderia Sensu Lato Species
Cited by: 16
Author(s): Natalia Alvarez-Santullano, Pamela Villegas, Mario Sepúlveda Mardones, Roberto E. Durán, Raúl Donoso, A. Gonzalez, Claudia Sanhueza, Rodrigo Navia, Francisca Acevedo, Danilo Pérez‐Pantoja, Michael Seeger
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2148-12-59

Perforin evolved from a gene duplication of MPEG1, followed by a complex pattern of gene gain and loss within Euteleostomi
Cited by: 41
Author(s): Michael D’Angelo, Michelle Anne Dunstone, James C. Whisstock, Joseph A. Trapani, Phillip I. Bird
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0010049

MrGrid: A Portable Grid Based Molecular Replacement Pipeline
Cited by: 2
Author(s): J.W. Schmidberger, Mark A. Bate, Cyril Reboul, G. S. Androulakis, Jennifer M. N. Phan, James C. Whisstock, Wojtek Goscinski, David Abramson, Ashley M. Buckle
Software Mentions: 1
Published: over 14 years ago

10.3390/s17112473

DEEP-SEE: Joint Object Detection, Tracking and Recognition with Application to Visually Impaired Navigational Assistance
Cited by: 51
Author(s): Ruxandra Țapu, Bogdan Mocanu, Titus Zaharia
Software Mentions: 1
Published: about 7 years ago

10.18632/aging.103315

Chronic polypharmacy impairs explorative behavior and reduces synaptic functions in young adult mice
Cited by: 9
Author(s): Francesca Eroli, Kristina Johnell, María Latorre-Leal, Chiara Adamo, Sarah N. Hilmer, Jonas W. Wastesson, Ángel Cedazo-Minguez, Silvia Maioli
Software Mentions: 1
Published: over 4 years ago

10.1007/s40828-018-0064-1

Polyoxometalates: more than a phasing tool in protein crystallography
Cited by: 34
Author(s): Aleksandar Bijelic, Annette Rompel
Software Mentions: 1
Published: about 6 years ago

10.3390/ijerph16234715

A Biophysical Analysis on the Arm Stroke Efficiency in Front Crawl Swimming: Comparing Methods and Determining the Main Performance Predictors
Cited by: 19
Author(s): Ricardo Peterson Silveira, Susana Soares, Rodrigo Zacca, Francisco Alves, Ricardo J. Fernandes, Flávio Antônio de Souza Castro, João Paulo Vilas-Boas
Software Mentions: 1
Published: almost 5 years ago

10.3389/fphys.2016.00681

Measuring Physical Activity in Free-Living Conditions—Comparison of Three Accelerometry-Based Methods
Cited by: 36
Author(s): Anna‐Maiju Leinonen, Riikka Ahola, Janne Kulmala, Harto Hakonen, Henri Vähä‐Ypyä, Karl‐Heinz Herzig, Juha Auvinen, Sirkka Keinänen‐Kiukaanniemi, Harri Sievänen, Tuija Tammelin, Raija Korpelainen, Timo Jämsä
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijerph181910277

Prevalence of Obstructive Sleep Apnea Syndrome: A Single-Center Retrospective Study
Cited by: 16
Author(s): Manlio Santilli, Eugenio Manciocchi, Gianmaria D’Addazio, Erica Di Maria, Michele D’Attilio, Beatrice Femminella, Bruna Sinjari
Software Mentions: 1
Published: about 3 years ago

10.1093/gbe/evz034

Investigating the Origins of Membrane Phospholipid Biosynthesis Genes Using Outgroup-Free Rooting
Cited by: 27
Author(s): Gareth A. Coleman, Richard D. Pancost, Tom A. Williams
Software Mentions: 1
Published: almost 6 years ago

Projects: pypi: MAD

Papers Mentioning MAD 45