Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
cran: FAMILY
A Convex Formulation for Modeling Interactions with Strong HeredityPapers that mentioned: 26
bioconductor: pcaExplorer
Interactive Visualization of RNA-seq Data Using a Principal Components ApproachPapers that mentioned: 26
pypi: FishTaco
FishTaco: a metagenomic computational framework, aiming to identify the taxa that are driving functional shifts in microbiomes.Papers that mentioned: 26
bioconductor: EBarrays
Unified Approach for Simultaneous Gene Clustering and Differential Expression IdentificationPapers that mentioned: 26
pypi: dadi
Fit population genetic models of demography and selection using diffusion approximations to the allele frequency spectrumPapers that mentioned: 25
bioconductor: variancePartition
Quantify and interpret drivers of variation in multilevel gene expression experimentsPapers that mentioned: 25
cran: DCGL
Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray DataPapers that mentioned: 25
pypi: Mother
Mother is a Python Orm oriented to introspection and self autoadaption.Papers that mentioned: 25
pypi: plan
A Python package for writing and deploying cron jobs with a clear and beautiful syntax.Papers that mentioned: 25
cran: HMP
Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMPPapers that mentioned: 25
pypi: CADET
CADET is a python interface to the CADET chromatography simulatorPapers that mentioned: 25
pypi: SPE
Python IDE with Blender, Kiki, PyChecker, Remote debugger, Uml and wxGlade supportPapers that mentioned: 25
bioconductor: conumee
Enhanced copy-number variation analysis using Illumina DNA methylation arraysPapers that mentioned: 25
pypi: MetaPathways
MetaPathways is a modular pipeline to build PGDBs from Metagenomic sequences.Papers that mentioned: 25
cran: RaceID
Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq DataPapers that mentioned: 25
cran: LDcorSV
Linkage Disequilibrium Corrected by the Structure and the RelatednessPapers that mentioned: 25
bioconductor: cellHTS2
Analysis of cell-based screens - revised version of cellHTSPapers that mentioned: 25
bioconductor: CellNOptR
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation dataPapers that mentioned: 25
pypi: sqldf
A simple way to run SQL queries (SQLite3) on pandas.Dataframe objects.Papers that mentioned: 25
cran: MasterBayes
ML and MCMC Methods for Pedigree Reconstruction and AnalysisPapers that mentioned: 25
pypi: MicrobeCensus
A command-line tool for estimating average genome size from shotgun sequence dataPapers that mentioned: 25
cran: MTE
Maximum Tangent Likelihood Estimation for Robust Linear Regression and Variable SelectionPapers that mentioned: 24
cran: corpcor
Efficient Estimation of Covariance and (Partial) CorrelationPapers that mentioned: 24
cran: fitTetra
fitTetra is an R package for assigning tetraploid genotype scoresPapers that mentioned: 24
cran: EnvStats
Package for Environmental Statistics, Including US EPA GuidancePapers that mentioned: 24
cran: hyperSpec
Work with Hyperspectral Data, i.e. Spectra + Meta Information (Spatial, Time, Concentration, ...)Papers that mentioned: 24
bioconductor: MSnbase
Base Functions and Classes for Mass Spectrometry and ProteomicsPapers that mentioned: 24