pypi: dms | Projects | Ecosyste.ms: Papers

10.1128/JVI.00500-19

Single-Cell Virus Sequencing of Influenza Infections That Trigger Innate Immunity
Cited by: 81
Author(s): Alan D. Russell, Elizaveta Elshina, Jacob R. Kowalsky, Aartjan J.W. te Velthuis, Jesse D. Bloom
Software Mentions: 6
Published: about 5 years ago

10.1126/scitranslmed.abi9915

Antibodies elicited by mRNA-1273 vaccination bind more broadly to the receptor binding domain than do those from SARS-CoV-2 infection
Cited by: 176
Author(s): Allison J Greaney, Andrea N Loes, Lauren E. Gentles, Katharine H.D. Crawford, Tyler N Starr, Keara D. Malone, Helen Y. Chu, Jesse D. Bloom
Software Mentions: 6
Published: about 3 years ago

10.1186/s12859-015-0590-4

Software for the analysis and visualization of deep mutational scanning data
Cited by: 101
Author(s): Jesse D. Bloom
Software Mentions: 5
Published: over 9 years ago

10.7554/eLife.38795

Enhanced ER proteostasis and temperature differentially impact the mutational tolerance of influenza hemagglutinin
Cited by: 20
Author(s): Angela M Phillips, Michael B. Doud, Luna O Gonzalez, Vincent Butty, Yu‐Shan Lin, Jesse D. Bloom, Matthew D. Shoulders
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-019-54208-9

Meglumine acridone acetate, the ionic salt of CMA and N-methylglucamine, induces apoptosis in human PBMCs via the mitochondrial pathway
Cited by: 5
Author(s): Marina Plotnikova, Sergey A. Klotchenko, Artem Kiselev, А. Н. Горшков, Anna-Polina Shurygina, Kirill Vasilyev, Urszula Uciechowska‐Kaczmarzyk, Sergey A. Samsonov, Alexey L. Kovalenko, А. В. Васин
Software Mentions: 4
Published: almost 5 years ago

10.1101/2021.03.17.435863

Mutational escape from the polyclonal antibody response to SARS-CoV-2 infection is largely shaped by a single class of antibodies
Cited by: 31
Author(s): Allison J Greaney, Tyler N Starr, Christopher O. Barnes, Yiska Weisblum, Fabian Schmidt, Marina Caskey, Christian Gaebler, Alice Cho, Marianna Agudelo, Shlomo Finkin, Zijun Wang, Daniel Poston, Frauke Muecksch, Théodora Hatziioannou, Paul D. Bieniasz, Davide F. Robbiani, Michel C. Nussenzweig, Pamela J. Björkman, Jesse D. Bloom
Software Mentions: 4
Published: over 3 years ago

10.1101/2020.09.10.292078

Complete mapping of mutations to the SARS-CoV-2 spike receptor-binding domain that escape antibody recognition
Cited by: 34
Author(s): Allison J Greaney, Tyler N Starr, Pavlo Gilchuk, Seth J. Zost, Elad Binshtein, Andrea N Loes, Sarah K Hilton, John Huddleston, Rachel Eguia, Katharine H.D. Crawford, Adam S. Dingens, Rachel S. Nargi, Rachel E. Sutton, Naveenchandra Suryadevara, Paul W. Rothlauf, Zhuoming Liu, Sean P. J. Whelan, Robert H. Carnahan, Jesse D Bloom
Software Mentions: 3
Published: about 4 years ago

10.1016/j.chom.2020.11.007

Complete Mapping of Mutations to the SARS-CoV-2 Spike Receptor-Binding Domain that Escape Antibody Recognition
Cited by: 855
Author(s): Allison J Greaney, Tyler N Starr, Pavlo Gilchuk, Seth J. Zost, Elad Binshtein, Andrea N Loes, Sarah K Hilton, John Huddleston, Rachel Eguia, Katharine H.D. Crawford, Adam S. Dingens, Rachel S. Nargi, Rachel E. Sutton, Naveen Chandra Suryadevara, Paul W. Rothlauf, Zhuoming Liu, Sean P. J. Whelan, Robert H. Carnahan, Jesse D Bloom
Software Mentions: 3
Published: over 3 years ago

10.7554/eLife.49324

Mapping person-to-person variation in viral mutations that escape polyclonal serum targeting influenza hemagglutinin
Cited by: 72
Author(s): Juhye Lee, Rachel Eguia, Seth J. Zost, Saket Choudhary, Patrick C. Wilson, Trevor Bedford, Terry Stevens-Ayers, Michael Boeckh, Aeron C. Hurt, Seema S. Lakdawala, Scott E. Hensley, Jesse D Bloom
Software Mentions: 3
Published: about 5 years ago

10.3390/v8060155

Accurate Measurement of the Effects of All Amino-Acid Mutations on Influenza Hemagglutinin
Cited by: 164
Author(s): Michael B. Doud, Jesse D. Bloom
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.ppat.1007159

Complete functional mapping of infection- and vaccine-elicited antibodies against the fusion peptide of HIV
Cited by: 42
Author(s): Adam S. Dingens, Priyamvada Acharya, Hugh K. Haddox, Reda Rawi, Kai Xu, Gwo-Yu Chuang, Hui Wei, Baoshan Zhang, John R. Mascola, Bridget Carragher, Clinton S. Potter, Julie Overbaugh, Peter D. Kwong, Jesse D Bloom
Software Mentions: 3
Published: about 6 years ago

10.1016/j.xcrm.2021.100255

Complete map of SARS-CoV-2 RBD mutations that escape the monoclonal antibody LY-CoV555 and its cocktail with LY-CoV016
Cited by: 368
Author(s): Tyler N Starr, Allison J Greaney, Adam S. Dingens, Jesse D. Bloom
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.ppat.1006271

Complete mapping of viral escape from neutralizing antibodies
Cited by: 116
Author(s): Michael B. Doud, Scott E. Hensley, Jesse D. Bloom
Software Mentions: 2
Published: over 7 years ago

10.1101/2020.11.16.385278

High resolution profiling of pathways of escape for SARS-CoV-2 spike-binding antibodies
Cited by: 8
Author(s): Meghan Garrett, Jared Galloway, Helen Y. Chu, Hannah L. Itell, Caitlin I. Stoddard, Caitlin R Wolf, Jennifer K. Logue, Dylan McDonald, F. A. Matsen, Julie Overbaugh
Software Mentions: 2
Published: almost 4 years ago

10.1128/JVI.00676-19

Identification of Ebola Virus Inhibitors Targeting GP2 Using Principles of Molecular Mimicry
Cited by: 12
Author(s): Courtney D Singleton, Monica S. Humby, Hyun Yi, Robert C. Rizzo, Amy Jacobs
Software Mentions: 2
Published: about 5 years ago

10.1101/2021.04.14.439844

The SARS-CoV-2 mRNA-1273 vaccine elicits more RBD-focused neutralization, but with broader antibody binding within the RBD
Cited by: 15
Author(s): Allison J Greaney, Andrea N Loes, Lauren E. Gentles, Katharine H.D. Crawford, Tyler N Starr, Keara D. Malone, Helen Y. Chu, Jesse D. Bloom
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.64256

Globally defining the effects of mutations in a picornavirus capsid
Cited by: 8
Author(s): Florian Mattenberger, Víctor Latorre, Omer Tirosh, Adi Stern, Ron Geller
Software Mentions: 2
Published: over 3 years ago

10.1186/s13321-019-0394-z

ACID: a free tool for drug repurposing using consensus inverse docking strategy
Cited by: 47
Author(s): Fan Wang, Feng-Xu Wu, Chengzhang Li, Chen-Yang Jia, Sun-Wen Su, Ge‐Fei Hao, Guang‐Fu Yang
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.ppat.1006288

Deep mutational scanning identifies sites in influenza nucleoprotein that affect viral inhibition by MxA
Cited by: 57
Author(s): Orr Ashenberg, Padmakumar Jai, Michael B. Doud, Jesse D. Bloom
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.64281

High-resolution mapping of the neutralizing and binding specificities of polyclonal sera post-HIV Env trimer vaccination
Cited by: 10
Author(s): Adam S. Dingens, Payal Pratap, Keara D. Malone, Sarah K Hilton, Thomas J. Ketas, Christopher A. Cottrell, Julie Overbaugh, John P. Moore, Per Johan Klasse, Andrew B. Ward, Jesse D Bloom
Software Mentions: 1
Published: over 3 years ago

10.3390/v11050439

Massively Parallel Profiling of HIV-1 Resistance to the Fusion Inhibitor Enfuvirtide
Cited by: 14
Author(s): Adam S. Dingens, Dana Arenz, Julie Overbaugh, Jesse D. Bloom
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48134-z

Three dimensional structures of putative, primitive proteins to investigate the origin of homochirality
Cited by: 10
Author(s): Akifumi Oda, Tomoki Nakayoshi, Koichi Kato, Shuichi Fukuyoshi, Eiji Kurimoto
Software Mentions: 1
Published: about 5 years ago

10.1186/s12859-019-3143-4

The impact of various seed, accessibility and interaction constraints on sRNA target prediction- a systematic assessment
Cited by: 5
Author(s): Martin Raden, Teresa Müller, Stefan Mautner, Rick Gelhausen, Rolf Backofen
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.ppat.1006114

Experimental Estimation of the Effects of All Amino-Acid Mutations to HIV’s Envelope Protein on Viral Replication in Cell Culture
Cited by: 90
Author(s): Hugh K. Haddox, Adam S. Dingens, Jesse D. Bloom
Software Mentions: 1
Published: almost 8 years ago

10.1155/2018/3469132

Inhibitory Activity and Docking Analysis of Antimalarial Agents from Stemona sp. toward Ferredoxin-NADP+ Reductase from Malaria Parasites
Cited by: 5
Author(s): Pratiwi Pudjiastuti, Ni Nyoman Tri Puspaningsih, Imam Siswanto, Much Zaenal Fanani, Yoko Ariga, Toshiharu Hase, Satyajit D. Sarker, Lutfun Nahar
Software Mentions: 1
Published: about 6 years ago

Ecosyste.ms: Papers

Projects: pypi: dms

Papers Mentioning dms 25