Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: dms
https://packages.ecosyste.ms/registries/pypi.org/packages/dms
database management service dashboard
3 versions
Latest release: almost 5 years ago
34 downloads last month
Papers Mentioning dms 25
10.1128/JVI.00500-19
Single-Cell Virus Sequencing of Influenza Infections That Trigger Innate ImmunityCited by: 81
Author(s): Alan D. Russell, Elizaveta Elshina, Jacob R. Kowalsky, Aartjan J.W. te Velthuis, Jesse D. Bloom
Software Mentions: 6
Published: over 5 years ago
10.1126/scitranslmed.abi9915
Antibodies elicited by mRNA-1273 vaccination bind more broadly to the receptor binding domain than do those from SARS-CoV-2 infectionCited by: 176
Author(s): Allison J Greaney, Andrea N Loes, Lauren E. Gentles, Katharine H.D. Crawford, Tyler N Starr, Keara D. Malone, Helen Y. Chu, Jesse D. Bloom
Software Mentions: 6
Published: over 3 years ago
10.1186/s12859-015-0590-4
Software for the analysis and visualization of deep mutational scanning dataCited by: 101
Author(s): Jesse D. Bloom
Software Mentions: 5
Published: over 9 years ago
10.7554/eLife.38795
Enhanced ER proteostasis and temperature differentially impact the mutational tolerance of influenza hemagglutininCited by: 20
Author(s): Angela M Phillips, Michael B. Doud, Luna O Gonzalez, Vincent Butty, Yu‐Shan Lin, Jesse D. Bloom, Matthew D. Shoulders
Software Mentions: 5
Published: about 6 years ago
10.1038/s41598-019-54208-9
Meglumine acridone acetate, the ionic salt of CMA and N-methylglucamine, induces apoptosis in human PBMCs via the mitochondrial pathwayCited by: 5
Author(s): Marina Plotnikova, Sergey A. Klotchenko, Artem Kiselev, А. Н. Горшков, Anna-Polina Shurygina, Kirill Vasilyev, Urszula Uciechowska‐Kaczmarzyk, Sergey A. Samsonov, Alexey L. Kovalenko, А. В. Васин
Software Mentions: 4
Published: almost 5 years ago
10.1101/2021.03.17.435863
Mutational escape from the polyclonal antibody response to SARS-CoV-2 infection is largely shaped by a single class of antibodiesCited by: 31
Author(s): Allison J Greaney, Tyler N Starr, Christopher O. Barnes, Yiska Weisblum, Fabian Schmidt, Marina Caskey, Christian Gaebler, Alice Cho, Marianna Agudelo, Shlomo Finkin, Zijun Wang, Daniel Poston, Frauke Muecksch, Théodora Hatziioannou, Paul D. Bieniasz, Davide F. Robbiani, Michel C. Nussenzweig, Pamela J. Björkman, Jesse D. Bloom
Software Mentions: 4
Published: over 3 years ago
10.1101/2020.09.10.292078
Complete mapping of mutations to the SARS-CoV-2 spike receptor-binding domain that escape antibody recognitionCited by: 34
Author(s): Allison J Greaney, Tyler N Starr, Pavlo Gilchuk, Seth J. Zost, Elad Binshtein, Andrea N Loes, Sarah K Hilton, John Huddleston, Rachel Eguia, Katharine H.D. Crawford, Adam S. Dingens, Rachel S. Nargi, Rachel E. Sutton, Naveenchandra Suryadevara, Paul W. Rothlauf, Zhuoming Liu, Sean P. J. Whelan, Robert H. Carnahan, Jesse D Bloom
Software Mentions: 3
Published: about 4 years ago
10.1016/j.chom.2020.11.007
Complete Mapping of Mutations to the SARS-CoV-2 Spike Receptor-Binding Domain that Escape Antibody RecognitionCited by: 855
Author(s): Allison J Greaney, Tyler N Starr, Pavlo Gilchuk, Seth J. Zost, Elad Binshtein, Andrea N Loes, Sarah K Hilton, John Huddleston, Rachel Eguia, Katharine H.D. Crawford, Adam S. Dingens, Rachel S. Nargi, Rachel E. Sutton, Naveen Chandra Suryadevara, Paul W. Rothlauf, Zhuoming Liu, Sean P. J. Whelan, Robert H. Carnahan, Jesse D Bloom
Software Mentions: 3
Published: almost 4 years ago
10.7554/eLife.49324
Mapping person-to-person variation in viral mutations that escape polyclonal serum targeting influenza hemagglutininCited by: 72
Author(s): Juhye Lee, Rachel Eguia, Seth J. Zost, Saket Choudhary, Patrick C. Wilson, Trevor Bedford, Terry Stevens-Ayers, Michael Boeckh, Aeron C. Hurt, Seema S. Lakdawala, Scott E. Hensley, Jesse D Bloom
Software Mentions: 3
Published: about 5 years ago
10.3390/v8060155
Accurate Measurement of the Effects of All Amino-Acid Mutations on Influenza HemagglutininCited by: 164
Author(s): Michael B. Doud, Jesse D. Bloom
Software Mentions: 3
Published: over 8 years ago
10.1371/journal.ppat.1007159
Complete functional mapping of infection- and vaccine-elicited antibodies against the fusion peptide of HIVCited by: 42
Author(s): Adam S. Dingens, Priyamvada Acharya, Hugh K. Haddox, Reda Rawi, Kai Xu, Gwo-Yu Chuang, Hui Wei, Baoshan Zhang, John R. Mascola, Bridget Carragher, Clinton S. Potter, Julie Overbaugh, Peter D. Kwong, Jesse D Bloom
Software Mentions: 3
Published: over 6 years ago
10.1016/j.xcrm.2021.100255
Complete map of SARS-CoV-2 RBD mutations that escape the monoclonal antibody LY-CoV555 and its cocktail with LY-CoV016Cited by: 368
Author(s): Tyler N Starr, Allison J Greaney, Adam S. Dingens, Jesse D. Bloom
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.ppat.1006271
Complete mapping of viral escape from neutralizing antibodiesCited by: 116
Author(s): Michael B. Doud, Scott E. Hensley, Jesse D. Bloom
Software Mentions: 2
Published: over 7 years ago
10.1101/2020.11.16.385278
High resolution profiling of pathways of escape for SARS-CoV-2 spike-binding antibodiesCited by: 8
Author(s): Meghan Garrett, Jared Galloway, Helen Y. Chu, Hannah L. Itell, Caitlin I. Stoddard, Caitlin R Wolf, Jennifer K. Logue, Dylan McDonald, F. A. Matsen, Julie Overbaugh
Software Mentions: 2
Published: almost 4 years ago
10.1128/JVI.00676-19
Identification of Ebola Virus Inhibitors Targeting GP2 Using Principles of Molecular MimicryCited by: 12
Author(s): Courtney D Singleton, Monica S. Humby, Hyun Yi, Robert C. Rizzo, Amy Jacobs
Software Mentions: 2
Published: over 5 years ago
10.1101/2021.04.14.439844
The SARS-CoV-2 mRNA-1273 vaccine elicits more RBD-focused neutralization, but with broader antibody binding within the RBDCited by: 15
Author(s): Allison J Greaney, Andrea N Loes, Lauren E. Gentles, Katharine H.D. Crawford, Tyler N Starr, Keara D. Malone, Helen Y. Chu, Jesse D. Bloom
Software Mentions: 2
Published: over 3 years ago
10.7554/eLife.64256
Globally defining the effects of mutations in a picornavirus capsidCited by: 8
Author(s): Florian Mattenberger, Víctor Latorre, Omer Tirosh, Adi Stern, Ron Geller
Software Mentions: 2
Published: almost 4 years ago
10.1186/s13321-019-0394-z
ACID: a free tool for drug repurposing using consensus inverse docking strategyCited by: 47
Author(s): Fan Wang, Feng-Xu Wu, Chengzhang Li, Chen-Yang Jia, Sun-Wen Su, Ge‐Fei Hao, Guang‐Fu Yang
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.ppat.1006288
Deep mutational scanning identifies sites in influenza nucleoprotein that affect viral inhibition by MxACited by: 57
Author(s): Orr Ashenberg, Padmakumar Jai, Michael B. Doud, Jesse D. Bloom
Software Mentions: 1
Published: over 7 years ago
10.7554/eLife.64281
High-resolution mapping of the neutralizing and binding specificities of polyclonal sera post-HIV Env trimer vaccinationCited by: 10
Author(s): Adam S. Dingens, Payal Pratap, Keara D. Malone, Sarah K Hilton, Thomas J. Ketas, Christopher A. Cottrell, Julie Overbaugh, John P. Moore, Per Johan Klasse, Andrew B. Ward, Jesse D Bloom
Software Mentions: 1
Published: almost 4 years ago
10.3390/v11050439
Massively Parallel Profiling of HIV-1 Resistance to the Fusion Inhibitor EnfuvirtideCited by: 14
Author(s): Adam S. Dingens, Dana Arenz, Julie Overbaugh, Jesse D. Bloom
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-48134-z
Three dimensional structures of putative, primitive proteins to investigate the origin of homochiralityCited by: 10
Author(s): Akifumi Oda, Tomoki Nakayoshi, Koichi Kato, Shuichi Fukuyoshi, Eiji Kurimoto
Software Mentions: 1
Published: about 5 years ago
10.1186/s12859-019-3143-4
The impact of various seed, accessibility and interaction constraints on sRNA target prediction- a systematic assessmentCited by: 5
Author(s): Martin Raden, Teresa Müller, Stefan Mautner, Rick Gelhausen, Rolf Backofen
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.ppat.1006114
Experimental Estimation of the Effects of All Amino-Acid Mutations to HIV’s Envelope Protein on Viral Replication in Cell CultureCited by: 90
Author(s): Hugh K. Haddox, Adam S. Dingens, Jesse D. Bloom
Software Mentions: 1
Published: almost 8 years ago
10.1155/2018/3469132
Inhibitory Activity and Docking Analysis of Antimalarial Agents from Stemona sp. toward Ferredoxin-NADP+ Reductase from Malaria ParasitesCited by: 5
Author(s): Pratiwi Pudjiastuti, Ni Nyoman Tri Puspaningsih, Imam Siswanto, Much Zaenal Fanani, Yoko Ariga, Toshiharu Hase, Satyajit D. Sarker, Lutfun Nahar
Software Mentions: 1
Published: about 6 years ago