Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: pcalg
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/pcalg
Methods for Graphical Models and Causal Inference
45 versions
Latest release: about 1 year ago
18 dependent packages
2,442 downloads last month
Papers Mentioning pcalg 24
10.3390/cells10082013
ChroMo, an Application for Unsupervised Analysis of Chromosome Movements in MeiosisCited by: 0
Author(s): Daniel León-Periñán, Alfonso Fernández-Álvarez
Software Mentions: 17
Published: over 3 years ago
10.1089/cmb.2019.0210
<i>bAIcis</i>: A Novel Bayesian Network Structural Learning Algorithm and Its Comprehensive Performance Evaluation Against Open-Source SoftwareCited by: 10
Author(s): Lixia Zhang, Leonardo O. Rodrigues, Niven R. Narain, Viatcheslav R. Akmaev
Software Mentions: 9
Published: over 4 years ago
10.3389/fgene.2019.00460
Learning Causal Biological Networks With the Principle of Mendelian RandomizationCited by: 37
Author(s): Md. Bahadur Badsha, Audrey Qiuyan Fu
Software Mentions: 9
Published: over 5 years ago
10.3389/fgene.2021.651812
MRPC: An R Package for Inference of Causal GraphsCited by: 2
Author(s): Md. Bahadur Badsha, Evan A Martin, Audrey Qiuyan Fu
Software Mentions: 7
Published: over 3 years ago
10.1038/s41598-021-84995-z
Genetic co-expression networks contribute to creating predictive model and exploring novel biomarkers for the prognosis of breast cancerCited by: 1
Author(s): Yuan-Kuei Li, Huan-Ming Hsu, Meng-Chiung Lin, Chi‐Wen Chang, Chi‐Ming Chu, Yu‐Jia Chang, Jyh‐Cherng Yu, Chien-Ting Chen, Chen-En Jian, Chien‐An Sun, Kanghua Chen, Ming-Hao Kuo, Chia-Shiang Cheng, Ya-Ting Chang, Yi-Syuan Wu, Hao-Yi Wu, Yating Yang, Chen Lin, Hung‐Che Lin, Je-Ming Hu, Yu-Tien Chang
Software Mentions: 6
Published: over 3 years ago
10.3389/fgene.2013.00303
Experimental assessment of static and dynamic algorithms for gene regulation inference from time series expression dataCited by: 18
Author(s): Mário Lopes, Gianluca Bontempi
Software Mentions: 6
Published: almost 12 years ago
10.1186/s12859-015-0856-x
3off2: A network reconstruction algorithm based on 2-point and 3-point information statisticsCited by: 13
Author(s): Séverine Affeldt, Louis Verny, Hervé Isambert
Software Mentions: 6
Published: almost 9 years ago
10.1371/journal.pcbi.1007866
Learning clinical networks from medical records based on information estimates in mixed-type dataCited by: 8
Author(s): Vincent Cabeli, Louis Verny, Nadir Sella, Guido Uguzzoni, Marc Verny, Hervé Isambert
Software Mentions: 5
Published: over 4 years ago
10.1186/s12885-019-6462-y
Systematical identifications of prognostic meaningful lung adenocarcinoma subtypes and the underlying mutational and expressional charactersCited by: 6
Author(s): Zhenyang Lv, Ting Lei
Software Mentions: 5
Published: almost 5 years ago
10.1186/s12859-019-2872-8
Integration of probabilistic regulatory networks into constraint-based models of metabolism with applications to Alzheimer’s diseaseCited by: 12
Author(s): Han Yu, Rachael Hageman Blair
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-021-84905-3
Causal effects in microbiomes using interventional calculusCited by: 9
Author(s): Musfiqur Rahman Sazal, Vitalii Stebliankin, Kalai Mathee, Changwon Yoo, Giri Narasimhan
Software Mentions: 5
Published: over 3 years ago
10.1186/2043-9113-4-8
comoR: a software for disease comorbidity risk assessmentCited by: 82
Author(s): Mohammad Ali Moni, Píetro Lió
Software Mentions: 5
Published: almost 11 years ago
10.1371/journal.pone.0234752
Bayesian networks established functional differences between breast cancer subtypesCited by: 5
Author(s): Lucía Trilla-Fuertes, Angelo Gámez‐Pozo, Jorge M. Arevalillo, Rocío López-Vacas, Elena López-Camacho, Guillermo Prado-Vázquez, Andrea Zapater-Moros, Mariana Díaz-Almirón, María Ferrer-Gómez, Hilario Navarro, Paolo Nanni, Pilar Zamora, Enrique Espinosa, Paloma Maı́n, Juan Ángel Fresno Vara
Software Mentions: 5
Published: over 4 years ago
10.1186/1755-8794-6-S3-S1
A categorical network approach for discovering differentially expressed regulations in cancerCited by: 2
Author(s): Nikolay Balov
Software Mentions: 4
Published: almost 12 years ago
10.1371/journal.pone.0237277
Causal graph analysis of COVID-19 observational data in German districts reveals effects of determining factors on reported case numbersCited by: 14
Author(s): Edgar Steiger, Tobias Mussgnug, Lars Eric Kroll
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pcbi.1005662
Learning causal networks with latent variables from multivariate information in genomic dataCited by: 29
Author(s): Louis Verny, Nadir Sella, Séverine Affeldt, Param Priya Singh, Hervé Isambert
Software Mentions: 3
Published: about 7 years ago
10.3389/fgene.2018.00430
Learning Subject-Specific Directed Acyclic Graphs With Mixed Effects Structural Equation Models From Observational DataCited by: 3
Author(s): Xiang Li, Shanghong Xie, Peter McColgan, Sarah J. Tabrizi, Rachael I. Scahill, Donglin Zeng, Yuanjia Wang
Software Mentions: 3
Published: about 6 years ago
10.3389/fpsyg.2021.648200
Cross-Linguistic Trade-Offs and Causal Relationships Between Cues to Grammatical Subject and Object, and the Problem of Efficiency-Related ExplanationsCited by: 7
Author(s): Natalia Levshina
Software Mentions: 2
Published: over 3 years ago
10.3389/fpsyg.2015.01702
Investigating the importance of self-theories of intelligence and musicality for students' academic and musical achievementCited by: 37
Author(s): Daniel Müllensiefen, Peter M. C. Harrison, Francesco Caprini, Amy Fancourt
Software Mentions: 2
Published: about 9 years ago
10.1371/journal.pone.0150611
Reconstructing Causal Biological Networks through Active LearningCited by: 21
Author(s): Hyunghoon Cho, Bonnie Berger, Jian Peng
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0239990
Brown fat does not cause cachexia in cancer patients: A large retrospective longitudinal FDG-PET/CT cohort studyCited by: 12
Author(s): Anton S. Becker, Caroline Zellweger, Sara Bacanovic, Sabine Franckenberg, Hannes W. Nagel, Lukas Frick, Khoschy Schawkat, Matthias Eberhard, Christian Blüthgen, Jörk Volbracht, Rudolf Moos, Christian Wolfrum, Irene A. Burger
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pone.0243229
Causal relations of health indices inferred statistically using the DirectLiNGAM algorithm from big data of Osaka prefecture health checkupsCited by: 4
Author(s): J. Kotoku, Asuka Oyama, Kanako Kitazumi, H. Toki, Akihiro Haga, Ryohei Yamamoto, Maki Shinzawa, Miyae Yamakawa, Sakiko Fukui, Keiichi Yamamoto, Toshiki Moriyama
Software Mentions: 2
Published: almost 4 years ago
10.4172/2153-0602.1000163
Causal Inference in the Age of Decision MedicineCited by: 19
Author(s): Amirnaser Yazdani, Eric Boerwinkle
Software Mentions: 2
Published: almost 10 years ago
10.1186/1471-2105-15-228
Estimating causal effects with a non-paranormal method for the design of efficient intervention experimentsCited by: 3
Author(s): Reiji Teramoto, Chiaki Saito, Saburô Funahashi
Software Mentions: 2
Published: over 10 years ago