Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: LPmerge
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/LPmerge
Merging Linkage Maps by Linear Programming
4 versions
Latest release: over 6 years ago
1 dependent package
158 downloads last month
Papers Mentioning LPmerge 24
10.3389/fpls.2018.00513
Tools for Genetic Studies in Experimental Populations of PolyploidsCited by: 121
Author(s): Peter M. Bourke, Roeland E. Voorrips, Richard G. F. Visser, Chris Maliepaard
Software Mentions: 8
Published: over 6 years ago
10.1186/s12864-018-4541-0
Genetic mapping and comparative genomics to inform restoration enhancement and culture of southern flounder, Paralichthys lethostigmaCited by: 8
Author(s): Shannon J. O’Leary, Christopher M. Hollenbeck, Robert R. Vega, John R. Gold, David S. Portnoy
Software Mentions: 5
Published: over 6 years ago
10.1534/genetics.116.194688
Wheat Landrace Genome DiversityCited by: 67
Author(s): Luzie U. Wingen, Claire West, Michelle Leverington-Waite, Sarah Collier, Simon Orford, Richard Goram, Caiyun Yang, Julie King, Alexandra M. Allen, Amanda Burridge, Keith J. Edwards, Simon Griffiths
Software Mentions: 5
Published: over 7 years ago
10.1371/journal.pgen.1008566
The persimmon genome reveals clues to the evolution of a lineage-specific sex determination system in plantsCited by: 54
Author(s): Takashi Akagi, Kenta Shirasawa, Hideki Nagasaki, Hideki Hirakawa, Ryutaro Tao, Luca Comai, Isabelle Henry
Software Mentions: 5
Published: over 4 years ago
10.1534/g3.116.037556
Construction of a High-Density American Cranberry (<i>Vaccinium macrocarpon</i>Ait.) Composite Map Using Genotyping-by-Sequencing for Multi-pedigree Linkage MappingCited by: 27
Author(s): Brandon Schlautman, Giovanny Covarrubias‐Pazaran, Luis Diaz‐Garcia, Massimo Iorizzo, James J. Polashock, Edward Grygleski, Nicholi Vorsa, Juan Zalapa
Software Mentions: 4
Published: over 7 years ago
10.3389/fpls.2020.00346
Exploration of the Yield Potential of Mesoamerican Wild Common Beans From Contrasting Eco-Geographic Regions by Nested Recombinant Inbred PopulationsCited by: 14
Author(s): Jorge C. Berny Mier y Teran, Enéas Ricardo Konzen, Antonia Palkovic, Siu Mui Tsai, Paul Gepts
Software Mentions: 3
Published: over 4 years ago
10.1007/s00122-016-2768-1
Integrating haplotype-specific linkage maps in tetraploid species using SNP markersCited by: 28
Author(s): Peter M. Bourke, Roeland E. Voorrips, Twan Kranenburg, J. Jansen, Richard G. F. Visser, Chris Maliepaard
Software Mentions: 2
Published: about 8 years ago
10.1371/journal.pone.0230855
Mapping quantitative trait loci associated with leaf rust resistance in five spring wheat populations using single nucleotide polymorphism markersCited by: 23
Author(s): Firdissa E. Bokore, Ron Knox, Richard D. Cuthbert, Curtis Pozniak, Brent D. McCallum, Amidou N’Diaye, R. M. DePauw, H. L. Campbell, Catherine A. Munro, Arti Singh, Colin W. Hiebert, Curt A. McCartney, Andrew Sharpe, Asheesh K. Singh, Dean Spaner, D. B. Fowler, Yuefeng Ruan, Samia Berraies, Brad Meyer
Software Mentions: 2
Published: over 4 years ago
10.1093/dnares/dsx020
The genome sequence of sweet cherry (Prunus avium) for use in genomics-assisted breedingCited by: 187
Author(s): Kenta Shirasawa, Kanji Isuzugawa, Mitsunobu Ikenaga, Yasuhito Saito, Takatsugu Yamamoto, Hideki Hirakawa, Sachiko Isobe
Software Mentions: 2
Published: over 7 years ago
10.3389/fpls.2017.01800
QTL Mapping of Grain Zn and Fe Concentrations in Two Hexaploid Wheat RIL Populations with Ample Transgressive SegregationCited by: 61
Author(s): Leonardo Crespo‐Herrera, Velu Govindan, James Stangoulis, Yuanfeng Hao, Ravi P. Singh
Software Mentions: 2
Published: almost 7 years ago
10.3389/fpls.2017.01389
A High-Density Consensus Map of Common Wheat Integrating Four Mapping Populations Scanned by the 90K SNP ArrayCited by: 62
Author(s): Weie Wen, Zhonghu He, Fengjie Gao, Jindong Liu, Hui Jin, Shengnan Zhai, Yanying Qu, Xianchun Xia
Software Mentions: 2
Published: about 7 years ago
10.3389/fpls.2021.727077
Construction of Consensus Genetic Map With Applications in Gene Mapping of Wheat (Triticum aestivum L.) Using 90K SNP ArrayCited by: 12
Author(s): Pingping Qu, Jiankang Wang, Weie Wen, Fengjie Gao, Jindong Liu, Xianchun Xia, Huiru Peng, Luyan Zhang
Software Mentions: 2
Published: about 3 years ago
10.1534/g3.115.019588
A Consensus Genetic Map for<i>Pinus taeda</i>and<i>Pinus elliottii</i>and Extent of Linkage Disequilibrium in Two Genotype-Phenotype Discovery Populations of<i>Pinus taeda</i>Cited by: 37
Author(s): Jared W. Westbrook, Vikram E. Chhatre, Le-Shin Wu, Srikar Chamala, Leandro G. Neves, Patricio Muñoz, Pedro Manuel Martínez-García, David B. Neale, Matias Kirst, Keithanne Mockaitis, C. Dana Nelson, Gary F. Peter, John M. Davis, Craig S. Echt
Software Mentions: 2
Published: about 9 years ago
10.3390/genes9070346
The Genetics of a Behavioral Speciation Phenotype in an Island SystemCited by: 18
Author(s): Thomas Blankers, Kevin P. Oh, Kerry L. Shaw
Software Mentions: 2
Published: about 6 years ago
10.1186/s12284-020-0373-z
Construction and integration of genetic linkage maps from three multi-parent advanced generation inter-cross populations in riceCited by: 10
Author(s): Pingping Qu, Jinhui Shi, Tianxiao Chen, Kai Chen, Congcong Shen, Jiankang Wang, Xiaojing Zhao, Guoyou Ye, Jianlong Xu, Luyan Zhang
Software Mentions: 2
Published: over 4 years ago
10.1007/s00122-014-2326-7
A consensus map for Ug99 stem rust resistance loci in wheatCited by: 115
Author(s): Long‐Xi Yu, Hugues Barbier, Matthew N. Rouse, Sukhwinder Singh, Ravi P. Singh, Sridhar Bhavani, Julio Huerta Espino, Mark E. Sorrells
Software Mentions: 2
Published: over 10 years ago
10.1186/1471-2164-15-171
Genome-wide distribution of genetic diversity and linkage disequilibrium in a mass-selected population of maritime pineCited by: 30
Author(s): Christophe Plomion, Émilie Chancerel, Jeffrey B. Endelman, Jean‐Baptiste Lamy, Eric Mandrou, Isabelle Lesur, François Ehrenmann, Fikret Isik, M.C.A.M. Bink, Joost van Heerwaarden, Laurent Bouffier
Software Mentions: 2
Published: over 10 years ago
10.1038/s41598-019-39967-9
Development and validation of an SNP genotyping array and construction of a high-density linkage map in castorCited by: 13
Author(s): Senapathy Senthilvel, Arpita Ghosh, Mobeen Shaik, Ranjan K. Shaw, Prashanth Bagali
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0207724
High-density multi-population consensus genetic linkage map for peachCited by: 18
Author(s): Cássia da Silva Linge, Laima Antanaviciute, Asma Abdelghafar, Pere Arús, D. Bassi, Laura Rossini, Stephen P. Ficklin, Ksenija Gašić
Software Mentions: 1
Published: almost 6 years ago
10.1007/s11032-016-0586-4
Genetic dissection of powdery mildew resistance in interspecific half-sib grapevine families using SNP-based mapsCited by: 58
Author(s): Soon Li Teh, Jonathan Fresnedo-Ramírez, Matthew D. Clark, David M. Gadoury, Qi Sun, Lance Cadle‐Davidson, James J. Luby
Software Mentions: 1
Published: over 7 years ago
10.1534/g3.114.015008
High-Resolution Linkage Map and Chromosome-Scale Genome Assembly for Cassava (<i>Manihot esculenta</i> Crantz) from 10 PopulationsCited by: 69
Author(s): Jessica B. Lyons
Software Mentions: 1
Published: over 9 years ago
10.1038/hortres.2017.3
Elucidation of the ‘Honeycrisp’ pedigree through haplotype analysis with a multi-family integrated SNP linkage map and a large apple (Malus×domestica) pedigree-connected SNP data setCited by: 51
Author(s): Nicholas P. Howard, Eric van de Weg, David S. Bedford, Cameron Peace, Stijn Vanderzande, Matthew D. Clark, Soon Li Teh, Lichun Cai, James J. Luby
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0094688
The USDA Barley Core Collection: Genetic Diversity, Population Structure, and Potential for Genome-Wide Association StudiesCited by: 175
Author(s): María Muñoz‐Amatriaín, Alfonso Cuesta‐Marcos, Jeffrey B. Endelman, Jordi Comadran, J. Michael Bonman, Harold E. Bockelman, Shiaoman Chao, Joanne Russell, Robbie Waugh, Patrick Hayes, Gary J. Muehlbauer
Software Mentions: 1
Published: over 10 years ago
10.1534/g3.117.039966
Genotyping-by-Sequencing Facilitates a High-Density Consensus Linkage Map for<i>Aegilops umbellulata</i>, a Wild Relative of Cultivated WheatCited by: 23
Author(s): Erena A. Edae, Pablo D. Olivera, Yue Jin, Matthew N. Rouse
Software Mentions: 1
Published: over 7 years ago