bioconductor: conumee | Projects | Ecosyste.ms: Papers

10.1016/j.ccell.2017.08.017

Integrated Molecular Meta-Analysis of 1,000 Pediatric High-Grade and Diffuse Intrinsic Pontine Glioma
Cited by: 662
Author(s): Alan Mackay, Anna Burford, Diana Carvalho, Elisa Izquierdo, Janat Fazal-Salom, Kathryn R. Taylor, Lynn Bjerke, Matthew Clarke, Maria Vinci, Meera Nandhabalan, Sara Temelso, Sergey Popov, Valeria Molinari, Pichai Raman, Angela J. Waanders, Harry Han, Saumya Gupta, Lynley V. Marshall, Stergios Zacharoulis, Sucheta Vaidya, Henry Mandeville, Leslie Bridges, Andrew Martin, Safa Al‐Sarraj, Christopher Chandler, Ho Keung Ng, Xingang Li, Kun Mu, Saoussen Trabelsi, Dorra H’mida-Ben Brahim, Alexei N. Kisljakov, Д. М. Коновалов, Andrew S. Moore, Ángel M. Carcaboso, Mariona Suñol, Carmen de Torres, Ofelia Cruz, Jaume Mora, Л. И. Шац, João N. Stávale, Lucas Tadeu Bidinotto, Rui Manuel Reis, Natacha Entz‐Werlé, Michael Farrell, Jane Cryan, Darach Crimmins, John Caird, Jane Pears, Michelle Monje, Marie‐Anne Debily, David Castel, Jacques Grill, Cynthia Hawkins, Hamid Nikbakht, Nada Jabado, Suzanne J. Baker, Stefan M. Pfister, David Jones, Maryam Fouladi, André O. von Bueren, Michael Baudis, Adam Resnick, Chris Jones
Software Mentions: 11
Published: about 7 years ago

10.3390/cancers12030653

Molecular-Clinical Correlation in Pediatric Medulloblastoma: A Cohort Series Study of 52 Cases in Taiwan
Cited by: 6
Author(s): Kuo Sheng Wu, Donald Ming Tak Ho, Shiann-Tarng Jou, Alice L. Yu, Huy Tran, Muh Lii Liang, Hsin Hung Chen, Yi Yen Lee, Yi Wei Chen, Shih Chieh Lin, Feng Chi Chang, Meng‐Li Tsai, Yen‐Lin Liu, Hsin Lun Lee, Kevin Hsieh, Wen Chang Huang, Shian Ying Sung, Che-Chang Chang, Chun A. Changou, Kung‐Hao Liang, Tsung Han Hsieh, Yun Ru Liu, Meng En Chao, Chonghua Wan, Shing Shung Chu, Er Chieh Cho, Tai-Tong Wong
Software Mentions: 9
Published: over 4 years ago

10.1186/s13058-018-1022-y

Clonal relatedness in tumour pairs of breast cancer patients
Cited by: 14
Author(s): Jana Biermann, Toshima Z. Parris, Szilárd Nemes, Anna Danielsson, Hanna Engqvist, Elisabeth Werner Rönnerman, Eva Forssell-Aronsson, Anikó Kovács, Per Karlsson, Khalil Helou
Software Mentions: 8
Published: over 6 years ago

10.3390/cancers13051113

MPscore: A Novel Predictive and Prognostic Scoring for Progressive Meningioma
Cited by: 12
Author(s): Feili Liu, Jin Qian, Chenkai Ma
Software Mentions: 8
Published: over 3 years ago

10.1038/s41598-020-64794-8

Integrative genomics approach identifies molecular features associated with early-stage ovarian carcinoma histotypes
Cited by: 12
Author(s): Hanna Engqvist, Toshima Z. Parris, Jana Biermann, Elisabeth Werner Rönnerman, Peter Larsson, Karin Sundfeldt, Anikó Kovács, Per Karlsson, Khalil Helou
Software Mentions: 7
Published: over 4 years ago

10.1002/cam4.3447

Methylome analyses of three glioblastoma cohorts reveal chemotherapy sensitivity markers within DDR genes
Cited by: 13
Author(s): Tobias Keßler, Anne Berberich, Ahmed Sadik, Felix Sahm, Thierry Gorlia, Christoph Meisner, Dirk C. Hoffmann, Antje Wick, Philipp Kickingereder, Petra Rübmann, Martin Bendszus, Christiane A. Opitz, Michael Weller, Martin van den Bent, Roger Stupp, Frank Winkler, Alba Ariela Brandes, Andreas von Deimling, Michael Platten, Wolfgang Wick
Software Mentions: 7
Published: about 4 years ago

10.3390/cancers12061461

PDX1 DNA Methylation Distinguishes Two Subtypes of Pancreatic Neuroendocrine Neoplasms with a Different Prognosis
Cited by: 19
Author(s): Gitta Boons, Timon Vandamme, Joe Ibrahim, Geert Roeyen, Ann Driessen, Dieter Peeters, Ben Lawrence, Cristin G. Print, Maria C. W. Peeters, Guy Van Camp, Ken Op de Beeck
Software Mentions: 6
Published: over 4 years ago

10.1186/s40478-019-0681-y

A simplified approach using Taqman low-density array for medulloblastoma subgrouping
Cited by: 17
Author(s): Gustavo Alencastro Veiga Cruzeiro, Karina Bezerra Salomão, Carlos Alberto Oliveira de Biagi, Martin Baumgärtner, Dominik Sturm, Régia Caroline Peixoto Lira, Taciani de Almeida Magalhães, Mirella Baroni, Vanessa da Silva Silveira, Fabiano Pinto Saggioro, Ricardo Santos de Oliveira, Paulo Henrique dos Santos Klinger, Ana Luíza Seidinger, José Andrés Yunes, Rosane Gomes de Paula Queiróz, Sueli Mieko Oba-Shinjo, Carlos Alberto Scrideli, Suely Kazue Nagahashi Marie, Luíz Gonzaga Tone, Elvis Terci Valera
Software Mentions: 6
Published: over 5 years ago

10.1007/s00401-019-02020-0

Second-generation molecular subgrouping of medulloblastoma: an international meta-analysis of Group 3 and Group 4 subtypes
Cited by: 161
Author(s): Tanvi Sharma, Ed C. Schwalbe, Daniel Williamson, Martin Sill, Volker Hovestadt, Martin Mynarek, Stefan Rutkowski, Giles Robinson, Amar Gajjar, Florence M.G. Cavalli, Vijay Ramaswamy, Michael D. Taylor, Janet C. Lindsey, Rebecca Hill, Natalie Jäger, Andrey Korshunov, Debbie Hicks, Simon Bailey, Marcel Kool, Lukas Chávez, Paul A. Northcott, Stefan M. Pfister, Steven C. Clifford
Software Mentions: 6
Published: over 5 years ago

10.1007/s00401-020-02230-x

Epigenomic, genomic, and transcriptomic landscape of schwannomatosis
Cited by: 21
Author(s): Sheila Mansouri, Suganth Suppiah, Yasin Mamatjan, Irene Paganini, Jeffrey Liu, Shirin Karimi, Vikas Patil, Farshad Nassiri, Olivia Singh, Yogi Sundaravadanam, Pramod C. Rath, Roberta Sestini, Francesca Gensini, Sameer Agnihotri, Jaishri O. Blakeley, Kimberly Laskie Ostrow, David A. Largaespada, Scott R. Plotkin, Anat Stemmer‐Rachamimov, Marcela Maria Ferrer, Trevor J. Pugh, Kenneth Aldape, Laura Papi, Gelareh Zadeh
Software Mentions: 4
Published: about 4 years ago

10.1200/JCO.19.00577

Germline <i>GPR161</i> Mutations Predispose to Pediatric Medulloblastoma
Cited by: 44
Author(s): Matthias Begemann, Sebastian M. Waszak, Giles Robinson, Natalie Jäger, Tanvi Sharma, Cordula Knopp, Florian Kraft, Olga Moser, Martin Mynarek, Léa Guerrini-Rousseau, Laurence Brugières, Pascale Varlet, Torsten Pietsch, Daniel C. Bowers, Murali Chintagumpala, Felix Sahm, Jan O. Korbel, Stefan Rutkowski, Thomas Eggermann, Amar Gajjar, Paul A. Northcott, Miriam Elbracht, Stefan M. Pfister, Udo Kontny, Ingo Kurth
Software Mentions: 4
Published: almost 5 years ago

10.1016/j.ccell.2018.04.004

Molecular, Pathological, Radiological, and Immune Profiling of Non-brainstem Pediatric High-Grade Glioma from the HERBY Phase II Randomized Trial
Cited by: 136
Author(s): Alan Mackay, Anna Burford, Valeria Molinari, David Jones, Elisa Izquierdo, Jurriaan Brouwer‐Visser, Felice Giangaspero, Christine Haberler, Torsten Pietsch, Thomas S. Jacques, Dominique Figarella‐Branger, Daniel Rodriguez, Paul S. Morgan, Pichai Raman, Angela J. Waanders, Adam Resnick, Maura Massimino, Maria Luisa Garré, Smith Hw, David Capper, Stefan M. Pfister, Thomas Würdinger, Rachel Tam, Josep Garcia, Meghna Das Thakur, Gilles Vassal, Jacques Grill, Tim Jaspan, Pascale Varlet, Chris Jones
Software Mentions: 4
Published: over 6 years ago

10.1038/s41408-020-0310-9

DNA methylation and copy number variation profiling of T-cell lymphoblastic leukemia and lymphoma
Cited by: 15
Author(s): Zahra Haider, Mattias Landfors, Irina Golovleva, Martin Erlanson, Kjeld Schmiegelow, Trond Flægstad, Jukka Kanerva, Ulrika Norén‐Nyström, Magnus Hultdin, Sofie Degerman
Software Mentions: 3
Published: over 4 years ago

10.12688/f1000research.16338.1

An accessible GenePattern notebook for the copy number variation analysis of Illumina Infinium DNA methylation arrays
Cited by: 4
Author(s): Clarence K. Mah, Jill P. Mesirov, Lukas Chávez
Software Mentions: 3
Published: almost 6 years ago

10.1002/2211-5463.13018

Genome‐wide DNA methylation analysis of Hashimoto's thyroiditis during pregnancy
Cited by: 2
Author(s): Wenqian Cai, Wenlei Fan, Xi‐Jiang Hu
Software Mentions: 3
Published: about 4 years ago

10.1016/S1470-2045(17)30243-7

Novel molecular subgroups for clinical classification and outcome prediction in childhood medulloblastoma: a cohort study
Cited by: 359
Author(s): Ed C. Schwalbe, Janet C. Lindsey, Sirintra Nakjang, Stephen Crosier, Amanda Smith, Debbie Hicks, Gholamreza Rafiee, Rebecca Hill, Alice Iliasova, T. J. Stone, Barry Pizer, Antony Michalski, Abhijit Joshi, Stephen B. Wharton, Thomas S. Jacques, Simon Bailey, Daniel Williamson, Steven C. Clifford
Software Mentions: 3
Published: over 7 years ago

10.1002/path.5537

Drivers underpinning the malignant transformation of giant cell tumour of bone
Cited by: 19
Author(s): Matthew Fittall, Iben Lyskjær, Peter Ellery, Patrick Lombard, Jannat Ijaz, Anna Strobl, Dahmane Oukrif, Maxime Tarabichi, Martin Sill, Christian Koelsche, Gunhild Mechtersheimer, Jonas Demeulemeester, Roberto Tirabosco, Fernanda Amary, Peter J. Campbell, Stefan M. Pfister, David Jones, Nischalan Pillay, Peter Van Loo, Sam Behjati, Adrienne M. Flanagan
Software Mentions: 2
Published: about 4 years ago

10.1186/s40478-021-01118-5

Molecular analysis of pediatric CNS-PNET revealed nosologic heterogeneity and potent diagnostic markers for CNS neuroblastoma with FOXR2-activation
Cited by: 19
Author(s): Andrey Korshunov, Konstantin Okonechnikov, Felix Schmitt-Hoffner, Marina Ryzhova, Felix Sahm, Damian Stichel, Daniel Schrimpf, David Reuß, Philipp Sievers, Abigail K Suwala, Ella Kumirova, Olga Zheludkova, Andrey Golanov, David Jones, Stefan M. Pfister, Marcel Kool, Andreas von Deimling
Software Mentions: 2
Published: almost 4 years ago

10.1007/s00428-020-02869-7

NUT midline carcinomas and their differentials by a single molecular profiling method: a new promising diagnostic strategy illustrated by a case report
Cited by: 11
Author(s): Simon Haefliger, Alexandar Tzankov, Stephan Frank, Michel Bihl, Alfonso Vallejo, Juerg Stebler, Juergen Hench
Software Mentions: 2
Published: over 4 years ago

10.3390/cancers13123002

From Sampling to Sequencing: A Liquid Biopsy Pre-Analytic Workflow to Maximize Multi-Layer Genomic Information from a Single Tube
Cited by: 12
Author(s): Kendra K. Maaß, Paulina Schad, Agnes M. E. Finster, Pitithat Puranachot, Fabian Rosing, Tatjana Wedig, Nathalie Schwarz, Natalie Stumpf, Stefan M. Pfister, Kristian W. Pajtler
Software Mentions: 2
Published: over 3 years ago

10.1186/s13148-021-01119-0

A novel DNA methylation signature is associated with androgen receptor activity and patient prognosis in bone metastatic prostate cancer
Cited by: 13
Author(s): Erik Bovinder Ylitalo, Elin Thysell, Mattias Landfors, Maria Brattsand, Emma Jernberg, Sead Crnalic, Anders Widmark, Magnus Hultdin, Anders Bergh, Sofie Degerman, Pernilla Wikström
Software Mentions: 2
Published: over 3 years ago

10.1186/s13000-020-01011-0

The decisive role of molecular pathology in presumed somatic metastases of type II testicular germ cell tumors: report of 2 cases
Cited by: 3
Author(s): Mariëtte E.G. Kranendonk, Wenzel M. Hackeng, G. Johan A. Offerhaus, Folkert H.M. Morsink, G. N. Jonges, Gerard Groenewegen, Pieter-Jaap Krijtenburg, Heinz‐Josef Klümpen, Wendy W.J. de Leng, Leendert Looijenga, Lodewijk A.A. Brosens
Software Mentions: 2
Published: over 4 years ago

10.1186/s13569-017-0075-5

Histone 3.3 hotspot mutations in conventional osteosarcomas: a comprehensive clinical and molecular characterization of six H3F3A mutated cases
Cited by: 48
Author(s): Christian Koelsche, Daniel Schrimpf, Lars Tharun, Eva Roth, Dominik Sturm, David Jones, Eva Kristin Renker, Martin Sill, Annika Baude, Felix Sahm, David Capper, Melanie Bewerunge-Hudler, Wolfgang Hartmann, Andreas E. Kulozik, Iver Petersen, Uta Flucke, H.W.B. Schreuder, Reinhard Büttner, Marc‐André Weber, Peter Schirmacher, Christoph Plass, Stefan M. Pfister, Andreas von Deimling, Gunhild Mechtersheimer
Software Mentions: 1
Published: over 7 years ago

10.1186/s40478-020-00973-y

High level MYCN amplification and distinct methylation signature define an aggressive subtype of spinal cord ependymoma
Cited by: 36
Author(s): Mark Raffeld, Zied Abdullaev, Svetlana D. Pack, Liqiang Xi, Sushma Nagaraj, Nicole Briceno, Elizabeth Vera, Stefania Pittaluga, Osório Lopes Abath Neto, Martha Quezado, Kenneth Aldape, Terri S. Armstrong, Mark R. Gilbert
Software Mentions: 1
Published: over 4 years ago

10.1007/s00401-018-1879-y

Practical implementation of DNA methylation and copy-number-based CNS tumor diagnostics: the Heidelberg experience
Cited by: 272
Author(s): David Capper, Damian Stichel, Felix Sahm, David Jones, Daniel Schrimpf, Martin Sill, Simone Schmid, Volker Hovestadt, David Reuß, Christian Koelsche, Annekathrin Reinhardt, Annika K. Wefers, Kristin Huang, Philipp Sievers, Azadeh Ebrahimi, Anne Schöler, Daniel Teichmann, Arend Koch, Daniel Hänggi, Andreas Unterberg, Michael Platten, Wolfgang Wick, Olaf Witt, Till Milde, Andrey Korshunov, Stefan M. Pfister, Andreas von Deimling
Software Mentions: 1
Published: over 6 years ago

Ecosyste.ms: Papers

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