cran: sdm | Projects | Ecosyste.ms: Papers

10.1002/ece3.6786

<i>SDMtune</i>: An R package to tune and evaluate species distribution models
Cited by: 68
Author(s): Sergio Vignali, Arnaud Barras, Raphaël Arlettaz, Veronika Braunisch
Software Mentions: 14
Published: over 3 years ago

10.1371/journal.pone.0243241

CoMA – an intuitive and user-friendly pipeline for amplicon-sequencing data analysis
Cited by: 15
Author(s): Sebastian Hupfauf, Mohammad Etemadi, Marina Fernández-Delgado Juárez, María Gómez-Brandòn, Heribert Insam, Sabine Marie Podmirseg
Software Mentions: 13
Published: over 3 years ago

10.1099/mgen.0.000165

Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection
Cited by: 45
Author(s): Jane Hawkey, David B. Ascher, Louise M. Judd, Ryan R. Wick, Xenia Kostoulias, Heather Cleland, Denis Spelman, Alex Padiglione, Anton Y. Peleg, Kathryn E. Holt
Software Mentions: 11
Published: over 6 years ago

10.1038/s41598-020-75476-w

Mass wasting susceptibility assessment of snow avalanches using machine learning models
Cited by: 44
Author(s): Bahram Choubin, Moslem Borji, Farzaneh Sajedi Hosseini, Amir Mosavi, Adrienn Dineva
Software Mentions: 10
Published: over 3 years ago

10.1038/s41396-020-00862-1

Fungal sporocarps house diverse and host-specific communities of fungicolous fungi
Cited by: 21
Author(s): Sundy Maurice, Gontran Arnault, Jenni Nordén, Synnøve Smebye Botnen, Otto Miettinen, Håvard Kauserud
Software Mentions: 10
Published: over 3 years ago

10.1038/s41598-018-38339-z

Spatial distribution of prokaryotic communities in hypersaline soils
Cited by: 26
Author(s): Blanca Vera-Gargallo, Taniya Roy Chowdhury, Joseph Brown, Sarah Fansler, Ana Durán‐Viseras, Cristina Sánchez‐Porro, Vanessa Bailey, Janet Jansson, António Ventosa
Software Mentions: 9
Published: over 5 years ago

10.1186/s13073-017-0428-y

Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naïve Parkinson’s disease patients
Cited by: 378
Author(s): Janis R. Bedarf, Falk Hildebrand, Luís Pedro Coelho, Shinichi Sunagawa, Mohammad Bahram, Felix Goeser, Peer Bork, Ullrich Wüllner
Software Mentions: 8
Published: about 7 years ago

10.1111/1462-2920.15314

Metagenomic assessment of the global diversity and distribution of bacteria and fungi
Cited by: 39
Author(s): Mohammad Bahram, Tarquin Netherway, Clémence Frioux, Pamela Ferretti, Luís Pedro Coelho, Stefan Geisen, Peer Bork, Falk Hildebrand
Software Mentions: 7
Published: over 3 years ago

10.1186/s40168-021-01012-1

Much ado about nothing? Off-target amplification can lead to false-positive bacterial brain microbiome detection in healthy and Parkinson’s disease individuals
Cited by: 25
Author(s): Janis R. Bedarf, Naiara Beraza, Hassan Khazneh, Ezgi Özkurt, David Baker, Valeri Borger, Ullrich Wüllner, Falk Hildebrand
Software Mentions: 7
Published: about 3 years ago

10.1371/journal.pone.0238669

Protected areas network is not adequate to protect a critically endangered East Africa Chelonian: Modelling distribution of pancake tortoise, Malacochersus tornieri under current and future climates
Cited by: 9
Author(s): Abraham Eustace, Luíz Fernando Esser, Rudolf Mremi, Patrick K. Malonza, Reginald T. Mwaya
Software Mentions: 6
Published: over 3 years ago

10.3897/mycokeys.39.28109

Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding
Cited by: 52
Author(s): Sten Anslan, R. Henrik Nilsson, Christian Wurzbacher, Petr Baldrián, Leho Tedersoo, Mohammad Bahram
Software Mentions: 5
Published: over 5 years ago

10.1016/j.chom.2021.05.008

Dispersal strategies shape persistence and evolution of human gut bacteria
Cited by: 52
Author(s): Falk Hildebrand, Toni I. Gossmann, Clémence Frioux, Ezgi Özkurt, Pernille Neve Myers, Pamela Ferretti, Michael Kuhn, Mohammad Bahram, Henrik Bjørn Nielsen, Peer Bork
Software Mentions: 5
Published: almost 3 years ago

10.7554/eLife.61968

Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species
Cited by: 36
Author(s): Arnaud Belcour, Clémence Frioux, Méziane Aïte, Anthony Bretaudeau, Falk Hildebrand, Anne Siegel
Software Mentions: 5
Published: over 3 years ago

10.7717/peerj.10941

Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture
Cited by: 59
Author(s): Rachel Gilroy, Anuradha Ray, María Getino, Isabella Pursley, Daniel L. Horton, Nabil-Fareed Alikhan, Dave Baker, Karim Gharbi, Neil Hall, Mick Watson, Evelien M. Adriaenssens, Ebenezer Foster-Nyarko, Sheikh Jarju, Arss Secka, Martín Antonio, Aharon Oren, Roy R. Chaudhuri, Roberto La Ragione, Falk Hildebrand, Mark J. Pallen
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pone.0232736

Using species distribution models to locate the potential cradles of the allopolyploid Gypsophila bermejoi G. López (Caryophyllaceae)
Cited by: 2
Author(s): Miguel de Luis, Julio Álvarez-Jiménez, Francisco Javier Rejos, Carmen Bartolomé
Software Mentions: 4
Published: about 4 years ago

10.1016/j.onehlt.2021.100299

Low mammalian species richness is associated with Kyasanur Forest disease outbreak risk in deforested landscapes in the Western Ghats, India
Cited by: 1
Author(s): Michael Walsh, Rashmi Bhat, Venkatesh Nagarajan‐Radha, Prakash Narayanan, Navya Vyas, Shailendra Sawleshwarkar, Chiranjay Mukhopadhyay
Software Mentions: 3
Published: over 2 years ago

10.1186/s13071-021-05017-5

Satellite-based modelling of potential tsetse (Glossina pallidipes) breeding and foraging sites using teneral and non-teneral fly occurrence data
Cited by: 5
Author(s): Stella Gachoki, T.A. Groen, Anton Vrieling, Michael N. Okal, A.K. Skidmore, Daniel Masiga
Software Mentions: 3
Published: over 2 years ago

10.1002/ece3.4357

Expected impacts of climate change threaten the anuran diversity in the Brazilian hotspots
Cited by: 19
Author(s): T. Vasconcelos, Bruno Tayar Marinho do Nascimento, Vitor Hugo Mendonça do Prado
Software Mentions: 3
Published: almost 6 years ago

10.3390/insects12040320

Evidence for Range Expansion and Origins of an Invasive Hornet Vespa bicolor (Hymenoptera, Vespidae) in Taiwan, with Notes on Its Natural Status
Cited by: 3
Author(s): Sheng-Shan Lu, Junichi Takahashi, Wei‐Ting Yeh, Ming‐Lun Lu, Jing-Yi Huang, Yi-Jing Lin, I-Hsin Sung
Software Mentions: 3
Published: about 3 years ago

10.1098/rsos.201603

Roughing it: terrain is crucial in identifying novel translocation sites for the vulnerable brush-tailed rock-wallaby (<i>Petrogale pencillata</i>)
Cited by: 1
Author(s): Shane D. Morris, Christopher N. Johnson, Barry W. Brook
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2021.636223

Stability Assessment of the Rumen Bacterial and Archaeal Communities in Dairy Cows Within a Single Lactation and Its Association With Host Phenotype
Cited by: 2
Author(s): Zhigang Zhu, Gareth Frank Difford, Samantha Joan Noel, Jan Lassen, Peter Løvendahl, Ole Højberg
Software Mentions: 2
Published: about 3 years ago

10.3390/plants9080957

Predicting the Potential Current and Future Distribution of the Endangered Endemic Vascular Plant Primula boveana Decne. ex Duby in Egypt
Cited by: 11
Author(s): Mohamed A. Abdelaal, Mauro Fois, Mohammed A. Dakhil, Gianluigi Bacchetta, Ghada A. El-Sherbeny
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-94266-6

A multi-hazard map-based flooding, gully erosion, forest fires, and earthquakes in Iran
Cited by: 26
Author(s): Soheila Pouyan, Hamid Reza Pourghasemi, Mojgan Bordbar, Soroor Rahmanian, John J. Clague
Software Mentions: 2
Published: almost 3 years ago

10.3897/zookeys.1005.56964

Rattlesnake (Crotalus spp.) distribution and diversity in Zacatecas, Mexico
Cited by: 1
Author(s): Jesús Lenin Lara-Galván, Juan F. Martínez-Montoya, José Jesús Sigala-Rodríguez, Citlalli Edith Esparza‐Estrada, Octavio C. Rosas-Rosas, Lucía Ávila-Herrera, A. Márcia Barbosa
Software Mentions: 2
Published: over 3 years ago

10.1186/2049-2618-2-30

LotuS: an efficient and user-friendly OTU processing pipeline
Cited by: 222
Author(s): Falk Hildebrand, Raul Yhossef Tito Tadeo, Anita Y. Voigt, Peer Bork, Jeroen Raes
Software Mentions: 2
Published: over 9 years ago

10.3390/ani10040649

Ecological Niche Models of Four Hard Tick Genera (Ixodidae) in Mexico
Cited by: 12
Author(s): C. Emilio, Claudia N Moreno-Arzate, Carlos A. López‐González
Software Mentions: 2
Published: about 4 years ago

Ecosyste.ms: Papers

Projects: cran: sdm

Papers Mentioning sdm 26