cran: fitTetra | Projects | Ecosyste.ms: Papers

10.3389/fpls.2018.00513

Tools for Genetic Studies in Experimental Populations of Polyploids
Cited by: 121
Author(s): Peter M. Bourke, Roeland E. Voorrips, Richard G. F. Visser, Chris Maliepaard
Software Mentions: 8
Published: over 6 years ago

10.1007/s00122-021-03834-x

Using probabilistic genotypes in linkage analysis of polyploids
Cited by: 2
Author(s): Yanlin Liao, Roeland E. Voorrips, Peter M. Bourke, Giorgio Tumino, Paul Arens, R.G.F. Visser, M.J.M. Smulders, Chris Maliepaard
Software Mentions: 7
Published: over 3 years ago

10.1534/g3.118.200986

Genomic Selection with Allele Dosage in <i>Panicum maximum</i> Jacq.
Cited by: 34
Author(s): Letícia Aparecida de Castro Lara, M. F. Santos, Liana Jank, Lucimara Chiari, Mariane de Mendonça Vilela, Rodrigo R. Amadeu, José Fortunato Ferreira Santos, Guilherme da Silva Pereira, Zhao‐Bang Zeng, Antônio Augusto Franco Garcia
Software Mentions: 6
Published: over 5 years ago

10.1534/g3.119.400378

Linkage Analysis and Haplotype Phasing in Experimental Autopolyploid Populations with High Ploidy Level Using Hidden Markov Models
Cited by: 54
Author(s): Marcelo Mollinari, Antônio Augusto Franco Garcia
Software Mentions: 5
Published: about 5 years ago

10.1186/s12859-019-2703-y

FitTetra 2.0 – improved genotype calling for tetraploids with multiple population and parental data support
Cited by: 32
Author(s): Konrad Zych, Gerrit Gort, Chris Maliepaard, Ritsert C. Jansen, Roeland E. Voorrips
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-017-4003-0

Conclusive evidence for hexasomic inheritance in chrysanthemum based on analysis of a 183 k SNP array
Cited by: 31
Author(s): Geert van Geest, Roeland E. Voorrips, Danny Esselink, Aike Post, Richard G. F. Visser, Paul Arens
Software Mentions: 3
Published: over 7 years ago

10.1186/s12711-020-00534-w

Genotype calling of triploid offspring from diploid parents
Cited by: 5
Author(s): Kim Erik Grashei, Jørgen Ødegård, T.H.E. Meuwissen
Software Mentions: 3
Published: over 4 years ago

10.3389/fgene.2019.00335

Family-Based Haplotype Estimation and Allele Dosage Correction for Polyploids Using Short Sequence Reads
Cited by: 10
Author(s): Ehsan Motazedi, Chris Maliepaard, Richard Finkers, R.G.F. Visser, Dick de Ridder
Software Mentions: 3
Published: over 5 years ago

10.1038/s41438-020-00398-7

RosBREED: bridging the chasm between discovery and application to enable DNA-informed breeding in rosaceous crops
Cited by: 32
Author(s): Amy Iezzoni, James R. McFerson, James J. Luby, Ksenija Gašić, Vance M. Whitaker, Nahla V. Bassil, Chengyan Yue, Karina Gallardo, Vicki McCracken, Michael Coe, Craig Hardner, Jason D. Zurn, Stan C. Hokanson, Eric van de Weg, Sook Jung, Dorrie Main, Cássia da Silva Linge, Stijn Vanderzande, Thomas M. Davis, Lise L. Mahoney, Chad E. Finn, Cameron Peace
Software Mentions: 2
Published: about 4 years ago

10.1038/hortres.2016.52

High-density SNP-based genetic maps for the parents of an outcrossed and a selfed tetraploid garden rose cross, inferred from admixed progeny using the 68k rose SNP array
Cited by: 38
Author(s): M. Vukosavljev, Paul Arens, Roeland E. Voorrips, Wendy Pc van ‘t Westende, G. Esselink, Peter M. Bourke, Peter Cox, Eric van de Weg, R.G.F. Visser, Chris Maliepaard, M.J.M. Smulders
Software Mentions: 2
Published: about 8 years ago

10.3389/fpls.2018.00104

Development and Applications of a High Throughput Genotyping Tool for Polyploid Crops: Single Nucleotide Polymorphism (SNP) Array
Cited by: 71
Author(s): Qi You, Xiping Yang, Ze Peng, Liping Xu, Jianping Wang
Software Mentions: 2
Published: almost 7 years ago

10.1007/s00122-016-2768-1

Integrating haplotype-specific linkage maps in tetraploid species using SNP markers
Cited by: 28
Author(s): Peter M. Bourke, Roeland E. Voorrips, Twan Kranenburg, J. Jansen, Richard G. F. Visser, Chris Maliepaard
Software Mentions: 2
Published: about 8 years ago

10.1007/s00122-018-3132-4

Multi-environment QTL analysis of plant and flower morphological traits in tetraploid rose
Cited by: 29
Author(s): Peter M. Bourke, Virginia W. Gitonga, Roeland E. Voorrips, Richard G. F. Visser, Frans A. Krens, Chris Maliepaard
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2016.01798

Genome-Wide Association Analysis of the Anthocyanin and Carotenoid Contents of Rose Petals
Cited by: 46
Author(s): Dietmar Schulz, Rena T. Schott, Roeland E. Voorrips, M.J.M. Smulders, Marcus Linde, Thomas Debener
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2105-12-172

Genotype calling in tetraploid species from bi-allelic marker data using mixture models
Cited by: 156
Author(s): Roeland E. Voorrips, Gerrit Gort, Ben Vosman
Software Mentions: 1
Published: over 13 years ago

10.1186/s12864-017-3979-9

Physical mapping of QTL for tuber yield, starch content and starch yield in tetraploid potato (Solanum tuberosum L.) by means of genome wide genotyping by sequencing and the 8.3 K SolCAP SNP array
Cited by: 26
Author(s): Elske Maria Schönhals, Jia Ding, Enrique Ritter, Maria João Paulo, Nicolás Cara, Ekhard Tacke, Hans-Reinhard Hofferbert, Jens Lübeck, Josef Strahwald, Christiane Gebhardt
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-016-2926-5

Advantages of continuous genotype values over genotype classes for GWAS in higher polyploids: a comparative study in hexaploid chrysanthemum
Cited by: 19
Author(s): Fabian Grandke, Priyanka Singh, H.C.M. Heuven, Jorn R. de Haan, Dirk Metzler
Software Mentions: 1
Published: about 8 years ago

10.3390/plants10081727

Association Mapping of Physiological and Morphological Traits Related to Crop Development under Contrasting Nitrogen Inputs in a Diverse Set of Potato Cultivars
Cited by: 7
Author(s): César Nieto, E.T. Lammerts van Bueren, Sjefke Allefs, Peter G. Vos, Gerard van der Linden, Chris Maliepaard, P.C. Struik
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0199716

QTL analysis reveals quantitative resistant loci for Phytophthora infestans and Tecia solanivora in tetraploid potato (Solanum tuberosum L.)
Cited by: 18
Author(s): Juan David Santa, Jhon A. Berdugo-Cely, Liliana Cely-Pardo, Mauricio Soto‐Suárez, Teresa Mosquera, H M Carlos Galeano
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0030906

Efficient Exact Maximum a Posteriori Computation for Bayesian SNP Genotyping in Polyploids
Cited by: 112
Author(s): Oliver Serang, Marcelo Mollinari, Antônio Augusto Franco Garcia
Software Mentions: 1
Published: almost 13 years ago

10.1007/s10681-018-2331-z

Multi-allelic QTL analysis of protein content in a bi-parental population of cultivated tetraploid potato
Cited by: 11
Author(s): Michiel T. Klaassen, Peter M. Bourke, Chris Maliepaard, Luisa M. Trindade
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2105-13-248

The simulation of meiosis in diploid and tetraploid organisms using various genetic models
Cited by: 72
Author(s): Roeland E. Voorrips, Chris Maliepaard
Software Mentions: 1
Published: about 12 years ago

10.1534/g3.118.200377

Linkage Disequilibrium and Evaluation of Genome-Wide Association Mapping Models in Tetraploid Potato
Cited by: 52
Author(s): Sanjeev Kumar Sharma, Katrin MacKenzie, Karen McLean, F. Dale, Steve Daniels, Glenn J. Bryan
Software Mentions: 1
Published: about 6 years ago

10.1007/s00122-015-2593-y

Development and analysis of a 20K SNP array for potato (Solanum tuberosum): an insight into the breeding history
Cited by: 140
Author(s): Peter G. Vos, Jan G. A. M. L. Uitdewilligen, Roeland E. Voorrips, R.G.F. Visser, Herman J. van Eck
Software Mentions: 1
Published: over 9 years ago

Ecosyste.ms: Papers

Projects: cran: fitTetra

Papers Mentioning fitTetra 24