Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: fitTetra
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/fitTetra
fitTetra is an R package for assigning tetraploid genotype
scores
1 version
Latest release: over 11 years ago
0 downloads
Papers Mentioning fitTetra 24
10.3389/fpls.2018.00513
Tools for Genetic Studies in Experimental Populations of PolyploidsCited by: 121
Author(s): Peter M. Bourke, Roeland E. Voorrips, Richard G. F. Visser, Chris Maliepaard
Software Mentions: 8
Published: over 6 years ago
10.1007/s00122-021-03834-x
Using probabilistic genotypes in linkage analysis of polyploidsCited by: 2
Author(s): Yanlin Liao, Roeland E. Voorrips, Peter M. Bourke, Giorgio Tumino, Paul Arens, R.G.F. Visser, M.J.M. Smulders, Chris Maliepaard
Software Mentions: 7
Published: over 3 years ago
10.1534/g3.118.200986
Genomic Selection with Allele Dosage in <i>Panicum maximum</i> Jacq.Cited by: 34
Author(s): Letícia Aparecida de Castro Lara, M. F. Santos, Liana Jank, Lucimara Chiari, Mariane de Mendonça Vilela, Rodrigo R. Amadeu, José Fortunato Ferreira Santos, Guilherme da Silva Pereira, Zhao‐Bang Zeng, Antônio Augusto Franco Garcia
Software Mentions: 6
Published: over 5 years ago
10.1534/g3.119.400378
Linkage Analysis and Haplotype Phasing in Experimental Autopolyploid Populations with High Ploidy Level Using Hidden Markov ModelsCited by: 54
Author(s): Marcelo Mollinari, Antônio Augusto Franco Garcia
Software Mentions: 5
Published: about 5 years ago
10.1186/s12859-019-2703-y
FitTetra 2.0 – improved genotype calling for tetraploids with multiple population and parental data supportCited by: 32
Author(s): Konrad Zych, Gerrit Gort, Chris Maliepaard, Ritsert C. Jansen, Roeland E. Voorrips
Software Mentions: 4
Published: over 5 years ago
10.1186/s12864-017-4003-0
Conclusive evidence for hexasomic inheritance in chrysanthemum based on analysis of a 183 k SNP arrayCited by: 31
Author(s): Geert van Geest, Roeland E. Voorrips, Danny Esselink, Aike Post, Richard G. F. Visser, Paul Arens
Software Mentions: 3
Published: over 7 years ago
10.1186/s12711-020-00534-w
Genotype calling of triploid offspring from diploid parentsCited by: 5
Author(s): Kim Erik Grashei, Jørgen Ødegård, T.H.E. Meuwissen
Software Mentions: 3
Published: over 4 years ago
10.3389/fgene.2019.00335
Family-Based Haplotype Estimation and Allele Dosage Correction for Polyploids Using Short Sequence ReadsCited by: 10
Author(s): Ehsan Motazedi, Chris Maliepaard, Richard Finkers, R.G.F. Visser, Dick de Ridder
Software Mentions: 3
Published: over 5 years ago
10.1038/s41438-020-00398-7
RosBREED: bridging the chasm between discovery and application to enable DNA-informed breeding in rosaceous cropsCited by: 32
Author(s): Amy Iezzoni, James R. McFerson, James J. Luby, Ksenija Gašić, Vance M. Whitaker, Nahla V. Bassil, Chengyan Yue, Karina Gallardo, Vicki McCracken, Michael Coe, Craig Hardner, Jason D. Zurn, Stan C. Hokanson, Eric van de Weg, Sook Jung, Dorrie Main, Cássia da Silva Linge, Stijn Vanderzande, Thomas M. Davis, Lise L. Mahoney, Chad E. Finn, Cameron Peace
Software Mentions: 2
Published: about 4 years ago
10.1038/hortres.2016.52
High-density SNP-based genetic maps for the parents of an outcrossed and a selfed tetraploid garden rose cross, inferred from admixed progeny using the 68k rose SNP arrayCited by: 38
Author(s): M. Vukosavljev, Paul Arens, Roeland E. Voorrips, Wendy Pc van ‘t Westende, G. Esselink, Peter M. Bourke, Peter Cox, Eric van de Weg, R.G.F. Visser, Chris Maliepaard, M.J.M. Smulders
Software Mentions: 2
Published: about 8 years ago
10.3389/fpls.2018.00104
Development and Applications of a High Throughput Genotyping Tool for Polyploid Crops: Single Nucleotide Polymorphism (SNP) ArrayCited by: 71
Author(s): Qi You, Xiping Yang, Ze Peng, Liping Xu, Jianping Wang
Software Mentions: 2
Published: almost 7 years ago
10.1007/s00122-016-2768-1
Integrating haplotype-specific linkage maps in tetraploid species using SNP markersCited by: 28
Author(s): Peter M. Bourke, Roeland E. Voorrips, Twan Kranenburg, J. Jansen, Richard G. F. Visser, Chris Maliepaard
Software Mentions: 2
Published: about 8 years ago
10.1007/s00122-018-3132-4
Multi-environment QTL analysis of plant and flower morphological traits in tetraploid roseCited by: 29
Author(s): Peter M. Bourke, Virginia W. Gitonga, Roeland E. Voorrips, Richard G. F. Visser, Frans A. Krens, Chris Maliepaard
Software Mentions: 2
Published: over 6 years ago
10.3389/fpls.2016.01798
Genome-Wide Association Analysis of the Anthocyanin and Carotenoid Contents of Rose PetalsCited by: 46
Author(s): Dietmar Schulz, Rena T. Schott, Roeland E. Voorrips, M.J.M. Smulders, Marcus Linde, Thomas Debener
Software Mentions: 1
Published: almost 8 years ago
10.1186/1471-2105-12-172
Genotype calling in tetraploid species from bi-allelic marker data using mixture modelsCited by: 156
Author(s): Roeland E. Voorrips, Gerrit Gort, Ben Vosman
Software Mentions: 1
Published: over 13 years ago
10.1186/s12864-017-3979-9
Physical mapping of QTL for tuber yield, starch content and starch yield in tetraploid potato (Solanum tuberosum L.) by means of genome wide genotyping by sequencing and the 8.3 K SolCAP SNP arrayCited by: 26
Author(s): Elske Maria Schönhals, Jia Ding, Enrique Ritter, Maria João Paulo, Nicolás Cara, Ekhard Tacke, Hans-Reinhard Hofferbert, Jens Lübeck, Josef Strahwald, Christiane Gebhardt
Software Mentions: 1
Published: about 7 years ago
10.1186/s12864-016-2926-5
Advantages of continuous genotype values over genotype classes for GWAS in higher polyploids: a comparative study in hexaploid chrysanthemumCited by: 19
Author(s): Fabian Grandke, Priyanka Singh, H.C.M. Heuven, Jorn R. de Haan, Dirk Metzler
Software Mentions: 1
Published: about 8 years ago
10.3390/plants10081727
Association Mapping of Physiological and Morphological Traits Related to Crop Development under Contrasting Nitrogen Inputs in a Diverse Set of Potato CultivarsCited by: 7
Author(s): César Nieto, E.T. Lammerts van Bueren, Sjefke Allefs, Peter G. Vos, Gerard van der Linden, Chris Maliepaard, P.C. Struik
Software Mentions: 1
Published: about 3 years ago
10.1371/journal.pone.0199716
QTL analysis reveals quantitative resistant loci for Phytophthora infestans and Tecia solanivora in tetraploid potato (Solanum tuberosum L.)Cited by: 18
Author(s): Juan David Santa, Jhon A. Berdugo-Cely, Liliana Cely-Pardo, Mauricio Soto‐Suárez, Teresa Mosquera, H M Carlos Galeano
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0030906
Efficient Exact Maximum a Posteriori Computation for Bayesian SNP Genotyping in PolyploidsCited by: 112
Author(s): Oliver Serang, Marcelo Mollinari, Antônio Augusto Franco Garcia
Software Mentions: 1
Published: over 12 years ago
10.1007/s10681-018-2331-z
Multi-allelic QTL analysis of protein content in a bi-parental population of cultivated tetraploid potatoCited by: 11
Author(s): Michiel T. Klaassen, Peter M. Bourke, Chris Maliepaard, Luisa M. Trindade
Software Mentions: 1
Published: almost 6 years ago
10.1186/1471-2105-13-248
The simulation of meiosis in diploid and tetraploid organisms using various genetic modelsCited by: 72
Author(s): Roeland E. Voorrips, Chris Maliepaard
Software Mentions: 1
Published: about 12 years ago
10.1534/g3.118.200377
Linkage Disequilibrium and Evaluation of Genome-Wide Association Mapping Models in Tetraploid PotatoCited by: 52
Author(s): Sanjeev Kumar Sharma, Katrin MacKenzie, Karen McLean, F. Dale, Steve Daniels, Glenn J. Bryan
Software Mentions: 1
Published: about 6 years ago
10.1007/s00122-015-2593-y
Development and analysis of a 20K SNP array for potato (Solanum tuberosum): an insight into the breeding historyCited by: 140
Author(s): Peter G. Vos, Jan G. A. M. L. Uitdewilligen, Roeland E. Voorrips, R.G.F. Visser, Herman J. van Eck
Software Mentions: 1
Published: about 9 years ago