Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: DCGL

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/DCGL

Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data
9 versions
Latest release: over 9 years ago
0 downloads

Papers Mentioning DCGL 25

BioNetStat: A Tool for Biological Networks Differential Analysis
Cited by: 21
Author(s): Vinícius Carvalho Jardim, Suzana de Siqueira Santos, André Fujita, Marcos Silveira Buckeridge
Software Mentions: 22
Published: about 5 years ago

10.1371/journal.pone.0240523

Whole transcriptomic network analysis using Co-expression Differential Network Analysis (CoDiNA)
Cited by: 12
Author(s): Deisy Morselli Gysi, Tiago de Miranda Fragoso, Fatemeh Zebardast, Wesley Bertoli, Volker Busskamp, Eivind Almaas, Katja Nowick
Software Mentions: 8
Published: almost 4 years ago

10.1371/journal.pone.0079729

DCGL v2.0: An R Package for Unveiling Differential Regulation from Differential Co-expression
Cited by: 76
Author(s): Jing Yang, Hui Yu, Baohong Liu, Zhongming Zhao, Lei Liu, Liangxiao Ma, Yixue Li, Yuanyuan Li
Software Mentions: 7
Published: almost 11 years ago

10.3390/genes12050665

Rewired Pathways and Disrupted Pathway Crosstalk in Schizophrenia Transcriptomes by Multiple Differential Coexpression Methods
Cited by: 6
Author(s): Hui Yu, Yan Guo, Jingchun Chen, Xiangning Chen, Peilin Jia, Zhongming Zhao
Software Mentions: 6
Published: over 3 years ago

10.1186/s13062-015-0088-z

The human disease network in terms of dysfunctional regulatory mechanisms
Cited by: 22
Author(s): Jing Yang, Sujuan Wu, Wentao Dai, Yixue Li, Yuanyuan Li
Software Mentions: 5
Published: almost 9 years ago

10.1186/s12920-020-00772-3

Expression correlation attenuates within and between key signaling pathways in chronic kidney disease
Cited by: 9
Author(s): Hui Yu, Dan-Qian Chen, Olufunmilola Oyebamiji, Zhao Yan, Yan Guo
Software Mentions: 4
Published: about 4 years ago

10.1155/2016/4241293

Differential Regulatory Analysis Based on Coexpression Network in Cancer Research
Cited by: 12
Author(s): Junyi Li, Yixue Li, Yuanyuan Li
Software Mentions: 4
Published: over 8 years ago

10.1186/s12918-016-0315-y

A novel integrated gene coexpression analysis approach reveals a prognostic three-transcription-factor signature for glioma molecular subtypes
Cited by: 8
Author(s): Sujuan Wu, Junyi Li, Mushui Cao, Jing Yang, Yixue Li, Yuanyuan Li
Software Mentions: 4
Published: about 8 years ago

10.1186/s12918-016-0280-5

DNetDB: The human disease network database based on dysfunctional regulation mechanism
Cited by: 21
Author(s): Jing Yang, Sujuan Wu, Shaoyou Yang, Jiawei Peng, Shi-Nuo Wang, Fu-Yan Wang, Yu-Xing Song, Ting Qi, Yixue Li, Yuanyuan Li
Software Mentions: 4
Published: over 8 years ago

10.1186/s12967-018-1732-z

Integrated analysis of dysregulated long non-coding RNAs/microRNAs/mRNAs in metastasis of lung adenocarcinoma
Cited by: 49
Author(s): Lifeng Li, Mengle Peng, Wenhua Xue, Zhirui Fan, Tian Wang, Jingyao Lian, Yunkai Zhai, Wenping Lian, Dongchun Qin, Jie Zhao
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12859-020-3468-z

Enhanced identification of significant regulators of gene expression
Cited by: 2
Author(s): Rezvan Ehsani, Finn Drabløs
Software Mentions: 3
Published: over 4 years ago

10.1155/2017/8347085

Identification of Transcriptional Modules and Key Genes in Chickens Infected with Salmonella enterica Serovar Pullorum Using Integrated Coexpression Analyses
Cited by: 7
Author(s): Baohong Liu, Jianping Cai
Software Mentions: 3
Published: over 7 years ago

10.1186/s13000-014-0210-z

Unveiling transcription factor regulation and differential co-expression genes in Duchenne muscular dystrophy
Cited by: 7
Author(s): Lijun Tian, Junhua Cao, Xingqiang Deng, Chuanling Zhang, Tong Qian, Xianxiang Song, Baoshan Huang
Software Mentions: 3
Published: almost 10 years ago

10.3389/fimmu.2020.00974

Airway Epithelial Cell Immunity Is Delayed During Rhinovirus Infection in Asthma and COPD
Cited by: 51
Author(s): Punnam Chander Veerati, Niamh M. Troy, Andrew T Reid, Ngan Fung Li, Kristy S Nichol, Parwinder Kaur, Steven Maltby, Peter Wark, Darryl A. Knight, Anthony Bosco, Christopher Grainge, Nathan W. Bartlett
Software Mentions: 3
Published: over 4 years ago

10.3389/fpls.2021.640746

Isolation and Functional Analysis of Genes Involved in Polyacylated Anthocyanin Biosynthesis in Blue Senecio cruentus
Cited by: 10
Author(s): Chenfei Lu, Yajun Li, Yumeng Cui, Jiangshan Ren, Fangting Qi, Jiaping Qu, Hua He, Silan Dai
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms20235988

Parallel Bud Mutation Sequencing Reveals that Fruit Sugar and Acid Metabolism Potentially Influence Stress in Malus
Cited by: 11
Author(s): Jirong Zhao, Fei Shen, Yuan Gao, Dajiang Wang, Kun Wang
Software Mentions: 3
Published: almost 5 years ago

10.1186/1471-2164-16-S3-S4

Mining the bladder cancer-associated genes by an integrated strategy for the construction and analysis of differential co-expression networks
Cited by: 99
Author(s): Su-Ping Deng, Lin Zhu, De-Shuang Huang
Software Mentions: 2
Published: over 9 years ago

10.1093/bioinformatics/bty372

REGGAE: a novel approach for the identification of key transcriptional regulators
Cited by: 8
Author(s): Tim Kehl, Lara Schneider, Kathrin Kattler, Daniel Stöckel, Jenny Wegert, Nico Gerstner, Nicole Ludwig, Ute Distler, Markus Schick, Ulrich Keller, Stefan Tenzer, Manfred Gessler, Jörn Walter, Andreas Keller, Norbert Graf, Eckart Meese, Hans‐Peter Lenhof
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.19481

Integrating omics data and protein interaction networks to prioritize driver genes in cancer
Cited by: 11
Author(s): Tiejun Zhang, Di Zhang
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pcbi.1005739

A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma
Cited by: 13
Author(s): André Voigt, Katja Nowick, Eivind Almaas
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12859-015-0543-y

Differential co-expression and regulation analyses reveal different mechanisms underlying major depressive disorder and subsyndromal symptomatic depression
Cited by: 19
Author(s): Fan Xu, Jing Yang, Jin Chen, Qingyuan Wu, Wenyin Gong, Jianguo Zhang, Wei Shao, Jun Mu, Deyu Yang, Yongtao Yang, Zhiwei Li, Peng Xie
Software Mentions: 2
Published: over 9 years ago

10.1186/s12920-020-0678-1

The International Conference on Intelligent Biology and Medicine 2019 (ICIBM 2019): computational methods and applications in medical genomics
Cited by: 2
Author(s): Chi Zhang, Ewy A. Mathé, Xia Ning, Zhongming Zhao, Kai Wang, Lang Li, Yan Guo
Software Mentions: 1
Published: over 4 years ago

10.1186/s12918-018-0564-z

Differential networking meta-analysis of gastric cancer across Asian and American racial groups
Cited by: 7
Author(s): Wentao Dai, Quanxue Li, Bingya Liu, Yixue Li, Yuanyuan Li
Software Mentions: 1
Published: over 6 years ago

10.1186/1756-0500-7-886

No3CoGP: non-conserved and conserved coexpressed gene pairs
Cited by: 2
Author(s): Chittabrata Mal, Aftabuddin, Sudip Kundu
Software Mentions: 1
Published: almost 10 years ago