Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: FMM

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/FMM

Rhythmic Patterns Modeling by FMM Models
4 versions
Latest release: almost 3 years ago
196 downloads last month

Papers Mentioning FMM 25

Electrophysiological and Transcriptomic Features Reveal a Circular Taxonomy of Cortical Neurons
Cited by: 5
Author(s): Alejandro Rodríguez-Collado, Cristina Rueda
Software Mentions: 4
Published: over 3 years ago

10.1155/2016/7863706

Reconstruction of the Fatty Acid Biosynthetic Pathway ofExiguobacterium antarcticumB7 Based on Genomic and Bibliomic Data
Cited by: 6
Author(s): Regiane Kawasaki, Rafael Azevedo Baraúna, Artur M. S. Silva, Marta S. P. Carepo, Rui Oliveira, Rui Marques, Rommel Thiago Jucá Ramos, Maria Paula Cruz Schneider
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-019-54569-1

Frequency Modulated Möbius Model Accurately Predicts Rhythmic Signals in Biological and Physical Sciences
Cited by: 19
Author(s): Cristina Rueda, Yolanda Larriba, Shyamal Peddada
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12859-015-0689-7

Finite mixture clustering of human tissues with different levels of IGF-1 splice variants mRNA transcripts
Cited by: 8
Author(s): Michele Pelosi, Marco Alfò, Francesca Martella, Elisa Pappalardo, Antonio Musarò
Software Mentions: 3
Published: about 9 years ago

10.1186/1471-2164-15-1070

Comparative genomics of Lactobacillus crispatus suggests novel mechanisms for the competitive exclusion of Gardnerella vaginalis
Cited by: 93
Author(s): Teija Ojala, Matti Kankainen, Joana Castro, Nuno Cerca, Sanna Edelman, Benita Westerlund-Wikström, Lars Paulín, Liisa Holm, Petri Auvinen
Software Mentions: 3
Published: almost 11 years ago

10.1038/s41598-018-28007-7

Enumerating all possible biosynthetic pathways in metabolic networks
Cited by: 24
Author(s): Aarthi Ravikrishnan, Meghana Nasre, Karthik Raman
Software Mentions: 3
Published: over 6 years ago

10.1038/srep32584

Distinct metabolic network states manifest in the gene expression profiles of pediatric inflammatory bowel disease patients and controls
Cited by: 17
Author(s): Carolin Knecht, Christoph Fretter, Philip Rosenstiel, Michael Krawczak, Marc‐Thorsten Hütt
Software Mentions: 3
Published: about 8 years ago

10.7717/peerj-cs.612

Rapid global path planning algorithm for unmanned surface vehicles in large-scale and multi-island marine environments
Cited by: 7
Author(s): Dong Wang, Jie Zhang, Jiucai Jin, Deqing Liu, Xingpeng Mao
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2020.00207

CaMeRe: A Novel Tool for Inference of Cancer Metabolic Reprogramming
Cited by: 4
Author(s): Haoyang Li, Juexiao Zhou, Huiyan Sun, Zhaowen Qiu, Xin Gao, Ying Xu
Software Mentions: 2
Published: over 4 years ago

10.3389/frobt.2020.00002

Marine Applications of the Fast Marching Method
Cited by: 12
Author(s): Santiago Garrido, David Álvarez, Lourdes Moreno
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13321-017-0239-6

A review of parameters and heuristics for guiding metabolic pathfinding
Cited by: 15
Author(s): Sarah M. Kim, Matthew I. Peña, Mark Moll, George N. Bennett, Lydia E. Kavraki
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-018-34454-z

Metabolic pathways synthesis based on ant colony optimization
Cited by: 3
Author(s): M. Gérard, Georgina Stegmayer, Diego H. Milone
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-69827-w

Highly improved convergence approach incorporating edge conditions for scattering analysis of graphene gratings
Cited by: 3
Author(s): Ruey-Bing Hwang
Software Mentions: 2
Published: over 4 years ago

10.3390/s21051908

Lung Nodule Segmentation with a Region-Based Fast Marching Method
Cited by: 21
Author(s): Marko Savić, Yanhe Ma, Giovanni Ramponi, Weiwei Du, Yahui Peng
Software Mentions: 2
Published: over 3 years ago

10.3390/s21103315

Opportunistic Network Algorithms for Internet Traffic Offloading in Music Festival Scenarios
Cited by: 0
Author(s): Aida-Ștefania Manole, Radu-Ioan Ciobanu, Ciprian Dobre, Raluca Purnichescu-Purtan
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms11041851

Functionality and Antioxidant Properties of Tilapia (Oreochromis niloticus) as Influenced by the Degree of Hydrolysis
Cited by: 95
Author(s): M. B. K. Foh, Issoufou Amadou, Betty Mabel Foh, M. T. Kamara, Wenshui Xia
Software Mentions: 2
Published: over 14 years ago

10.1093/aobpla/plaa040

The influence of warming and biotic interactions on the potential for range expansion of native and nonnative species
Cited by: 2
Author(s): Betsy Von Holle, Sören E. Weber, David M. Nickerson
Software Mentions: 2
Published: over 4 years ago

10.1186/s11689-018-9249-6

An emotion recognition subtyping approach to studying the heterogeneity and comorbidity of autism spectrum disorders and attention-deficit/hyperactivity disorder
Cited by: 21
Author(s): Francesca Waddington, Catharina A. Hartman, Yvette de Bruijn, Martijn Lappenschaar, Anoek M. Oerlemans, Jan K. Buitelaar, Barbara Franke, Nanda Rommelse
Software Mentions: 2
Published: about 6 years ago

10.1186/s12859-014-0447-2

PathwayBooster: a tool to support the curation of metabolic pathways
Cited by: 6
Author(s): Rodrigo Liberal, Beata K Lisowska, David J. Leak, John W. Pinney
Software Mentions: 2
Published: over 9 years ago

10.1186/1480-9222-16-8

Integration of bioinformatics to biodegradation
Cited by: 47
Author(s): Pankaj Arora, Hyeun‐Jong Bae
Software Mentions: 2
Published: over 10 years ago

10.1186/s12934-014-0173-5

Development of bio-based fine chemical production through synthetic bioengineering
Cited by: 39
Author(s): Kiyotaka Y. Hara, Michihiro Araki, Naoko Okai, Satoshi Wakai, Tomohisa Hasunuma, Akihiko Kondo
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0254152

A simple parametric representation of the Hodgkin-Huxley model
Cited by: 8
Author(s): Alejandro Rodríguez-Collado, Cristina Rueda
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0153284

Unidirectional Flux Balance of Monovalent Ions in Cells with Na/Na and Li/Na Exchange: Experimental and Computational Studies on Lymphoid U937 Cells
Cited by: 18
Author(s): Igor A. Vereninov, Valentina E. Yurinskaya, Michael A. Model, Vereninov Aa
Software Mentions: 2
Published: over 8 years ago

10.1002/ece3.7948

Multiple paternity in two populations of finetooth sharks ( Carcharhinus isodon ) with varying reproductive periodicity
Cited by: 1
Author(s): Cody S. Nash, Philip C. Darby, Bryan S. Frazier, Jill M. Hendon, Jeremy M. Higgs, Eric R. Hoffmayer, Toby S. Daly‐Engel
Software Mentions: 2
Published: over 3 years ago

10.12688/f1000research.4867.1

High-Performance Mixed Models Based Genome-Wide Association Analysis with omicABEL software
Cited by: 18
Author(s): Diego Fabregat‐Traver, Sodbo Sharapov, Caroline Hayward, Igor Rudan, Harry Campbell, Yurii S. Aulchenko, Paolo Bientinesi
Software Mentions: 2
Published: over 10 years ago