pypi: dadi | Projects | Ecosyste.ms: Papers

10.1111/eva.13143

Population genomics and history of speciation reveal fishery management gaps in two related redfish species ( Sebastes mentella and Sebastes fasciatus )
Cited by: 20
Author(s): Laura Benestan, Quentin Rougemont, Caroline Senay, Éric Normandeau, Éric Parent, Rick M. Rideout, Louis Bernatchez, Yvan Lambert, Céline Audet, Gérard Parent
Software Mentions: 10
Published: almost 4 years ago

10.1111/1755-0998.12686

<scp>multi‐dice</scp> : <scp>r</scp> package for comparative population genomic inference under hierarchical co‐demographic models of independent single‐population size changes
Cited by: 31
Author(s): Alexander T. Xue, Michael J. Hickerson
Software Mentions: 7
Published: over 7 years ago

10.7554/eLife.54967

A community-maintained standard library of population genetic models
Cited by: 96
Author(s): Jeffrey R. Adrion, Christopher B. Cole, Noah Dukler, Jared Galloway, Ariella L. Gladstein, Graham Gower, Christopher C. Kyriazis, Aaron P. Ragsdale, Georgia Tsambos, Franz Baumdicker, Jedidiah Carlson, Reed A. Cartwright, Arun Durvasula, Ilan Gronau, Bernard Kim, Patrick McKenzie, Philipp W. Messer, Ekaterina Noskova, Diego Ortega Del Vecchyo, Fernando Racimo, Travis J Struck, Simon Gravel, Ryan N. Gutenkunst, Kirk E. Lohmueller, Peter L. Ralph, Daniel R. Schrider, Adam Siepel, Jerome Kelleher, Andrew D. Kern
Software Mentions: 7
Published: about 4 years ago

10.1038/s42003-020-01482-3

Evaluating insect-host interactions as a driver of species divergence in palm flower weevils
Cited by: 11
Author(s): Bruno A. S. de Medeiros, Brian D. Farrell
Software Mentions: 7
Published: almost 4 years ago

10.7554/eLife.56279

Emergence and diversification of a highly invasive chestnut pathogen lineage across southeastern Europe
Cited by: 21
Author(s): Lea Stauber, Thomas Badet, Alice Feurtey, Simone Prospero, Daniel Croll
Software Mentions: 6
Published: over 3 years ago

10.1093/molbev/msaa305

dadi.CUDA: Accelerating Population Genetics Inference with Graphics Processing Units
Cited by: 13
Author(s): Ryan N. Gutenkunst
Software Mentions: 3
Published: over 3 years ago

10.1186/s12864-019-6439-x

Intraspecific diversification of the crop wild relative Brassica cretica Lam. using demographic model selection
Cited by: 10
Author(s): Antonios Kioukis, Vassiliki A. Michalopoulou, Laura Briers, Stergios Pirintsos, David J. Studholme, Pavlos Pavlidis, Panagiotis F. Sarris
Software Mentions: 3
Published: over 4 years ago

10.1093/molbev/msab047

Biases in demographic modelling affect our understanding of recent divergence
Cited by: 32
Author(s): Paolo Momigliano, Ann‐Britt Florin, Juha Merilä
Software Mentions: 3
Published: over 3 years ago

10.1007/s00122-018-3171-x

The western Mediterranean region provided the founder population of domesticated narrow-leafed lupin
Cited by: 24
Author(s): Mahsa Mousavi‐Derazmahalleh, Bruno Nevado, Philipp E. Bayer, Dmitry A. Filatov, James K. Hane, David Edwards, William Erskine, Matthew N. Nelson
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12864-015-1330-x

A genome-wide scan for signatures of directional selection in domesticated pigs
Cited by: 59
Author(s): Seok-Jae Moon, Tae Hun Kim, Kyung Tai Lee, Woori Kwak, Taeheon Lee, Si Woo Lee, Myung Jick Kim, Kyuho Cho, Namshin Kim, Won Hyong Chung, Samsun Sung, Taesung Park, Seoae Cho, Martien A. M. Groenen, Rasmus Nielsen, Yuseob Kim, Heebal Kim
Software Mentions: 2
Published: over 9 years ago

10.1186/s12915-021-01052-x

Large-scale genomic analysis reveals the genetic cost of chicken domestication
Cited by: 20
Author(s): Ming Shan Wang, Jin Jin Zhang, Xing Guo, Ming Li, Rachel S. Meyer, Hidayat Ashari, Zhu Zheng, Sheng Wang, Mingjing Peng, Yu Jiang, Mukesh Thakur, Chatmongkon Suwannapoom, Ali Esmailizadeh, Nalini Yasoda Hirimuthugoda, Sharif Hussein Sharif Zein, Szilvia Kusza, Hamed Kharrati-Koopaee, Lin Zeng, Yun Mei Wang, Ting Yin, Min Yang, Ming Li Li, Xue Lu, Emiliano Lasagna, Simone Ceccobelli, Humpita Gamaralalage Thilini Nisanka Gunwardana, Thilina Madusanka Senasig, Feng Shao, Hao Zhang, A. K. F. H. Bhuiyan, Muhammad Sajjad Khan, Gamamada Liyanage Lalanie Pradeepa Silva, Lê Thị Bích Thủy, Okeyo Ally Mwai, Mohamed N.M. Ibrahim, Guojie Zhang, Kai Qu, Olivier Hanotte, Beth Shapiro, Mirte Bosse, Dong Wu, Jilong Han, Ya Ping Zhang
Software Mentions: 2
Published: over 3 years ago

10.1093/gigascience/giaa005

GADMA: Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data
Cited by: 42
Author(s): Ekaterina Noskova, Vladimir Ulyantsev, Klaus Peter Koepfli, Stephen J. O’Brien, Pavel Dobrynin
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-018-20154-1

A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)
Cited by: 187
Author(s): Sean D. Schoville, Yolanda H. Chen, Martin Andersson, Joshua B. Benoit, Anita Bhandari, Julia H. Bowsher, Kristian Brevik, Kaat Cappelle, Mei Ju M. Chen, Anna K. Childers, Christopher P. Childers, Olivier Christiaens, Justin Clements, Elise M. Didion, Elena N. Elpidina, Patamarerk Engsontia, Markus Friedrich, Inmaculada García-Robles, Richard A. Gibbs, Chandan Goswami, Alessandro Grapputo, Kristina Gruden, Marcin Grynberg, Bernard Henrissat, Emily C. Jennings, Jeffery W. Jones, Megha Kalsi, Sher Afzal Khan, Abhishek Kumar, Fēi Li, Vincent Lombard, Xingzhou Ma, Alexander Martynov, Nicholas J. Miller, Robert F. Mitchell, Monica Muñoz-Torres, Anna Muszewska, Brenda Oppert, Subba Reddy Palli, Kristen A. Panfilio, Yannick Pauchet, Lindsey C. Perkin, Marko Petek, Monica Poelchau, Éric Record, Joseph P. Rinehart, Hugh M. Robertson, Andrew J. Rosendale, Victor M. Ruiz-Arroyo, Guy Smagghe, Zsofia Szendrei, Gregg W.C. Thomas, Alex S. Torson, Iris M. Vargas Jentzsch, Matthew T. Weirauch, Ashley D. Yates, George D. Yocum, June‐Sun Yoon, Stephen Richards
Software Mentions: 2
Published: over 6 years ago

10.1111/eva.13236

Invasion and rapid adaptation of guppies (Poecilia reticulata) across the Hawaiian Archipelago
Cited by: 3
Author(s): William C. Rosenthal, Peter B. McIntyre, Peter J. Lisi, Robert B. Prather, Kristine N. Moody, Michael J. Blum, J. Derek Hogan, Sean D. Schoville
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.64165

Introgression shapes fruit color convergence in invasive Galápagos tomato
Cited by: 8
Author(s): Matthew J. S. Gibson, María de Lourdes Torres, Yaniv Brandvain, Leonie C. Moyle
Software Mentions: 1
Published: about 3 years ago

10.1186/s12915-017-0351-0

Population genomics reveals that an anthropophilic population of Aedes aegypti mosquitoes in West Africa recently gave rise to American and Asian populations of this major disease vector
Cited by: 89
Author(s): Jacob E. Crawford, Joel M. Alves, William J. Palmer, Jonathan P. Day, Massamba Sylla, Ranjan Ramasamy, Sinnathamby N. Surendran, William C. Black, Arnab Pain, Francis M. Jiggins
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2018.00728

Whole-Genome Sequencing of Three Native Cattle Breeds Originating From the Northernmost Cattle Farming Regions
Cited by: 44
Author(s): Melak Weldenegodguad, Ruslan Popov, Kisun Pokharel, Innokentyi Ammosov, Ming Yao, Zoya Ivanova, Juha Kantanen
Software Mentions: 1
Published: over 5 years ago

10.1093/molbev/msab162

Inferring Genome-Wide Correlations of Mutation Fitness Effects between Populations
Cited by: 20
Author(s): X. T. Huang, Alyssa Lyn Fortier, Alec J. Coffman, Travis J Struck, Megan N. Irby, Jennifer E. James, José E. León-Burguete, Aaron P. Ragsdale, Ryan N. Gutenkunst
Software Mentions: 1
Published: over 3 years ago

10.1093/molbev/msu040

Genomic Analyses of Three Malaria Vectors Reveals Extensive Shared Polymorphism but Contrasting Population Histories
Cited by: 38
Author(s): Samantha OʼLoughlin, Stephen Magesa, Charles M. Mbogo, Frank Mosha, Janet Midega, Susan Lomas, Austin Burt
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pgen.1007387

Human demographic history has amplified the effects of background selection across the genome
Cited by: 60
Author(s): Raúl Torres, Zachary A. Szpiech, Ryan D. Hernández
Software Mentions: 1
Published: about 6 years ago

10.1186/s12862-015-0318-0

Evaluating the performance of anchored hybrid enrichment at the tips of the tree of life: a phylogenetic analysis of Australian Eugongylus group scincid lizards
Cited by: 56
Author(s): Matthew C. Brandley, Jason G. Bragg, Sonal Singhal, David G. Chapple, Charlotte K Jennings, Alan R. Lemmon, Emily Moriarty Lemmon, Michael B. Thompson, Craig Moritz
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-15-895

New insights into domestication of carrot from root transcriptome analyses
Cited by: 53
Author(s): Jun Rong, Youri Lammers, Jared L. Strasburg, Natasha Schidlo, Yavuz Ariyürek, Tom J. de Jong, Peter G. L. Klinkhamer, M.J.M. Smulders, Klaas Vrieling
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.115.023788

Using Ancient Samples in Projection Analysis
Cited by: 5
Author(s): Melinda A. Yang, Montgomery Slatkin
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-020-79720-1

Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster
Cited by: 9
Author(s): Adamandia Kapopoulou, Martin Kapun, Bjorn Pieper, Pavlos Pavlidis, Ricardo Wilches, Pablo Duchen, Wolfgang Stephan, Stefan Laurent
Software Mentions: 1
Published: over 3 years ago

10.1007/s00122-017-3045-7

Exploring the genetic and adaptive diversity of a pan-Mediterranean crop wild relative: narrow-leafed lupin
Cited by: 45
Author(s): Mahsa Mousavi‐Derazmahalleh, Philipp E. Bayer, Bruno Nevado, Bhavna Hurgobin, Dmitry A. Filatov, Andrzej Kilian, Lars G. Kamphuis, Karam B. Singh, Jens Berger, James K. Hane, David Edwards, William Erskine, Matthew N. Nelson
Software Mentions: 1
Published: over 6 years ago

Ecosyste.ms: Papers

Projects: pypi: dadi

Papers Mentioning dadi 25