cran: control | Projects | Ecosyste.ms: Papers

10.12688/gatesopenres.12832.2

DataPackageR: Reproducible data preprocessing, standardization and sharing using R/Bioconductor for collaborative data analysis
Cited by: 7
Author(s): Greg Finak, Bryan T. Mayer, William J. Fulp, Paul Obrecht, Alicia Sato, Eva Yin-han Chung, Drienna Holman, Raphaël Gottardo
Software Mentions: 19
Published: over 6 years ago

10.2196/11602

A Web-Based Telemanagement System for Improving Disease Activity and Quality of Life in Patients With Complex Inflammatory Bowel Disease: Pilot Randomized Controlled Trial
Cited by: 51
Author(s): Javier del Hoyo, Pilar Nos, Raquel Faubel, Diana Muñoz, Dana A. Dominguez, Guillermo Bastida, Bernardo Valdivieso, Marisa Correcher, Mariam Aguas
Software Mentions: 8
Published: almost 6 years ago

10.3389/fmicb.2021.691296

Comparison of Two Aspergillus oryzae Genomes From Different Clades Reveals Independent Evolution of Alpha-Amylase Duplication, Variation in Secondary Metabolism Genes, and Differences in Primary Metabolism
Cited by: 7
Author(s): Katherine Chacón-Vargas, Colin O McCarthy, Dasol Choi, Long Wang, Jae‐Hyuk Yu, John G. Gibbons
Software Mentions: 5
Published: over 3 years ago

10.26508/lsa.201900546

A comprehensive resource for retrieving, visualizing, and integrating functional genomics data
Cited by: 4
Author(s): Matthias Blum, Pierre-Etienne Cholley, Valeriya Malysheva, Samuel Nicaise, Julien Moehlin, Hinrich Gronemeyer, Marco Antonio Mendoza-Parra
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13073-016-0297-9

Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet
Cited by: 144
Author(s): Douglas Mahana, Chad M. Trent, Zachary Kurtz, Nicholas A. Bokulich, Thomas Battaglia, Jennifer Chung, Christian L. Müller, Huilin Li, Richard Bonneau, Martin J. Blaser
Software Mentions: 4
Published: over 8 years ago

10.3390/cancers13061409

Detection of Genomically Aberrant Cells within Circulating Tumor Microemboli (CTMs) Isolated from Early-Stage Breast Cancer Patients
Cited by: 8
Author(s): M. Silvestri, Carolina Reduzzi, Giancarlo Feliciello, Marta Vismara, Thomas Schamberger, Cäcilia Köstler, Rosita Motta, Stefano Calza, Cristina Ferraris, Andrea Vingiani, Giancarlo Pruneri, Maria Grazia Daidone, Christoph Klein, Bernhard Polzer, Vera Cappelletti
Software Mentions: 4
Published: over 3 years ago

10.1002/gcc.22799

Insertional oncogenesis by HPV70 revealed by multiple genomic analyses in a clinically HPV‐negative cervical cancer
Cited by: 2
Author(s): A.R. Van Arsdale, Nicole E. Patterson, Elaine C. Maggi, Lorenzo Agoni, Koenraad Van Doorslaer, Bryan Harmon, Nicole S. Nevadunsky, D.Y.S. Kuo, Mark H. Einstein, Jack Lenz, Cristina Montagna
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pbio.3000919

Design of novel granulopoietic proteins by topological rescaffolding
Cited by: 6
Author(s): Birte Hernandez Alvarez, Julia Skokowa, Murray Coles, Perihan Mir, Masoud Nasri, Kateryna Maksymenko, Laura Weidmann, Katherine W. Rogers, Karl Welte, Andrei N. Lupas, Patrick Müller, Mohammad ElGamacy
Software Mentions: 4
Published: almost 4 years ago

10.7554/eLife.63429

Structural basis for human TRPC5 channel inhibition by two distinct inhibitors
Cited by: 33
Author(s): Kangcheng Song, Mengping Wei, Wenjun Guo, Quan Li, Yimin Kang, Jing-Xiang Wu
Software Mentions: 4
Published: over 3 years ago

10.1002/term.2133

Autonomous magnetic labelling of functional mesenchymal stem cells for improved traceability and spatial control in cell therapy applications
Cited by: 40
Author(s): Richard P. Harrison, Hareklea Markides, Robert H. Morris, Paula J. Richards, Alicia J. El Haj, Virginie Sottile
Software Mentions: 3
Published: over 8 years ago

10.1186/s12859-016-1239-7

nbCNV: a multi-constrained optimization model for discovering copy number variants in single-cell sequencing data
Cited by: 16
Author(s): Changsheng Zhang, Hongming Cai, Jingying Huang, Yan Song
Software Mentions: 3
Published: about 8 years ago

10.3390/plants10010104

CRISPR/Cas9-Mediated Knockout of HOS1 Reveals Its Role in the Regulation of Secondary Metabolism in Arabidopsis thaliana
Cited by: 14
Author(s): Yuri N. Shkryl, Yulia A. Yugay, Т.В. Авраменко, Valeria P. Grigorchuk, Tatiana Y. Gorpenchenko, Olga Grischenko, Victor P. Bulgakov
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0224309

Indomethacin enhances anti-tumor efficacy of a MUC1 peptide vaccine against breast cancer in MUC1 transgenic mice
Cited by: 11
Author(s): Jennifer M. Curry, Dahlia M. Besmer, Timothy K. Erick, Nury Steuerwald, Lopamudra Das Roy, Priyanka Grover, Shanti Rao, Sritama Nath, Jacob W. Ferrier, Robert W. Reid, Pinku Mukherjee
Software Mentions: 3
Published: about 5 years ago

10.1038/s42003-021-02442-1

A fragment-based approach identifies an allosteric pocket that impacts malate dehydrogenase activity
Cited by: 2
Author(s): Atilio Reyes Romero, S. Lunev, Grzegorz M. Popowicz, V. Calderone, Matteo Gentili, Michael Sattler, Jacek Plewka, Michał Taube, Maciej Kozak, Tad A. Holak, Alexander Dömling, Matthew R. Groves
Software Mentions: 3
Published: over 3 years ago

10.3389/fgene.2018.00087

STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers
Cited by: 26
Author(s): Loan Nguyen, Antônio Reverter, Ángela Cánovas, B. Venus, Stephen Anderson, Alma Islas–Trejo, Marina Mortati Dias, N. F. Crawford, S. A. Lehnert, Juan F. Medrano, M. G. Thomas, S. S. Moore, M. R. S. Fortes
Software Mentions: 3
Published: over 6 years ago

10.3389/fimmu.2020.569727

Alterations of Gut Microbiome and Metabolite Profiling in Mice Infected by Schistosoma japonicum
Cited by: 27
Author(s): Yue Hu, Jiansong Chen, Yongping Xu, Hongli Zhou, Ping Huang, Yu-Bin Ma, Minzhao Gao, Shaoyun Cheng, Haiyun Zhou, Ziquan Lv
Software Mentions: 3
Published: about 4 years ago

10.2196/resprot.9639

A Web-Based Telemanagement System for Patients With Complex Inflammatory Bowel Disease: Protocol for a Randomized Controlled Clinical Trial
Cited by: 9
Author(s): Mariam Aguas, Javier del Hoyo, Raquel Faubel, Diana Muñoz, Dana A. Dominguez, Guillermo Bastida, Belén Navarro, Alejandra Barrios, Bernardo Valdivieso, Marisa Correcher, Pilar Nos
Software Mentions: 3
Published: almost 6 years ago

10.3390/ijms21041475

Analysis of Single Circulating Tumor Cells in Renal Cell Carcinoma Reveals Phenotypic Heterogeneity and Genomic Alterations Related to Progression
Cited by: 20
Author(s): Vera Cappelletti, Elena Verzoni, Raffaele Ratta, Marta Vismara, M. Silvestri, Rosanna Montone, Patrizia Miodini, Carolina Reduzzi, Mélanie Claps, Pierangela Sepe, Maria Grazia Daidone, Giuseppe Procopio
Software Mentions: 3
Published: over 4 years ago

10.2196/jmir.7174

From the Experience of Interactivity and Entertainment to Lower Intention to Smoke: A Randomized Controlled Trial and Path Analysis of a Web-Based Smoking Prevention Program for Adolescents
Cited by: 12
Author(s): Georges Elias Khalil, Hua Wang, Karen Sue Calabro, N. Mitra, Ross Shegog, Alexander V. Prokhorov
Software Mentions: 3
Published: almost 8 years ago

10.1002/open.202100141

Synthesis and Antiprotozoal Profile of 3,4,5‐Trisubstituted Isoxazoles
Cited by: 3
Author(s): Fernanda A. Rosa, Samara Mendes de Souza Melo, Karlos Eduardo Pianoski, Julia Poletto, Mariellen Guilherme dos Santos, Michael Jackson Vieira da Silva, Danielle Lazarin‐Bidóia, Hélito Volpato, Sidnei Moura, Celso Vataru Nakamura
Software Mentions: 2
Published: over 3 years ago

10.1186/s12863-019-0723-2

Characterization of the extra copy of TPOX locus with tri-allelic pattern
Cited by: 5
Author(s): Qinrui Yang, Baonian Liu, Chengchen Shao, Yuxiang Zhou, Jinliang Li, Yuyin Pan, Kuan Sun, Hongmei Xu, Chengtao Li, Ting Wei, Yueqin Zhou, Qiqun Tang, Jianhui Xie
Software Mentions: 2
Published: almost 6 years ago

10.1042/BJ20131553

Myoplasmic resting Ca2+ regulation by ryanodine receptors is under the control of a novel Ca2+-binding region of the receptor
Cited by: 14
Author(s): Yanyi Chen, Shenghui Xue, Juan Zou, José R. López, Jenny J. Yang, Claudio F. Pérez
Software Mentions: 2
Published: over 10 years ago

10.1111/acel.12710

<scp>HTRA</scp>1, an age‐related macular degeneration protease, processes extracellular matrix proteins <scp>EFEMP</scp>1 and <scp>TSP</scp>1
Cited by: 67
Author(s): Michael K. Lin, Jin Yang, Chun Wei Hsu, Anuradha Gore, Alexander G. Bassuk, Lewis M. Brown, Ryan M. Colligan, Jesse D. Sengillo, Vinit B. Mahajan, Stephen H. Tsang
Software Mentions: 2
Published: over 6 years ago

10.3389/fphys.2020.596729

Anise Hyssop Agastache foeniculum Increases Lifespan, Stress Resistance, and Metabolism by Affecting Free Radical Processes in Drosophila
Cited by: 8
Author(s): Olha Strilbytska, Alina Zayachkivska, Alexander Koliada, Fabio Galeotti, Nicola Volpi, Kenneth B. Storey, Alexander Vaiserman, Oleh Lushchak
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmolb.2021.689466

Genomic Analysis Reveals Heterogeneity Between Lesions in Synchronous Primary Right-Sided and Left-Sided Colon Cancer
Cited by: 6
Author(s): Hanqing Hu, Qian Zhang, Rui Huang, Zhifeng Gao, Ziming Yuan, Qingchao Tang, Feng Gao, Meng Wang, Weiyuan Zhang, Tianyi Ma, Tianyu Qiao, Yinghu Jin, Guiyu Wang
Software Mentions: 2
Published: over 3 years ago

10.3390/foods7030041

Chemical Composition and Antioxidant Activity of Propolis Prepared in Different Forms and in Different Solvents Useful for Finished Products
Cited by: 84
Author(s): Fabio Galeotti, Francesca Maccari, Alfredo Fachini, Nicola Volpi
Software Mentions: 2
Published: over 6 years ago

Ecosyste.ms: Papers

Projects: cran: control

Papers Mentioning control 26