pypi: Assemble | Projects | Ecosyste.ms: Papers

10.1186/1758-2946-5-12

Computational mass spectrometry for small molecules
Cited by: 124
Author(s): Kerstin Scheubert, Franziska Hufsky, Sebastian Böcker
Software Mentions: 5
Published: almost 12 years ago

MAYGEN: an open-source chemical structure generator for constitutional isomers based on the orderly generation principle
Cited by: 6
Author(s): Mehmet Aziz Yirik, Maria Sorokina, Christoph Steinbeck
Software Mentions: 3
Published: over 3 years ago

10.1128/MRA.00990-18

Draft Genome Sequence of Salmonella enterica subsp. enterica Serotype Typhimurium Sequence Type 313, Isolated from India
Cited by: 0
Author(s): Sohan Rodney Bangera, Shashikiran Umakanth, Asish K. Mukhopadhyay, Pimlapas Leekitcharoenphon, Goutam Chowdhury, René S. Hendriksen, Mamatha Ballal
Software Mentions: 2
Published: over 6 years ago

10.1186/1759-8753-5-25

Molecular characterization of a new member of the lariat capping twin-ribozyme introns
Cited by: 13
Author(s): Yunjia Tang, Hans Bruun Nielsen, Benoı̂t Masquida, Paul P. Gardner, Steinar Johansen
Software Mentions: 2
Published: over 10 years ago

10.7554/eLife.57063

Functionally specialized human CD4+ T-cell subsets express physicochemically distinct TCRs
Cited by: 12
Author(s): Sofya A. Kasatskaya, Kristin Ladell, Evgeniy S. Egorov, Kelly L. Miners, Alexey N. Davydov, Maria Metsger, Dmitry B. Staroverov, Elena K Matveyshina, Irina A. Shagina, Ilgar Z. Mamedov, Mark Izraelson, Pavel V. Shelyakin, Olga V. Britanova, David A. Price, Dmitriy M. Chudakov
Software Mentions: 2
Published: about 4 years ago

10.1042/BSR20180430

Computational modeling of RNA 3D structure based on experimental data
Cited by: 37
Author(s): Almudena Ponce-Salvatierra, Astha Astha, Katarzyna Merdas, Chandran Nithin, Pritha Ghosh, Sunandan Mukherjee, Janusz Bujnicki
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pcbi.1005032

Structure Prediction of RNA Loops with a Probabilistic Approach
Cited by: 25
Author(s): Jun Li, Zhang Jian, Jun Wang, Weihua Li, Wei Wang
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0169324

Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand
Cited by: 62
Author(s): Achiraya Siriphap, Pimlapas Leekitcharoenphon, Rolf Sommer Kaas, Chonchanok Theethakaew, Frank Møller Aarestrup, Orasa Sutheinkul, René S. Hendriksen
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0136444

GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies
Cited by: 10
Author(s): Mélanie Boudard, Julie Bernauer, Dominique Barth, Johanne Cohen, Alain Denise
Software Mentions: 2
Published: over 9 years ago

10.1093/gigascience/gix075

The draft genome sequence of a desert tree Populus pruinosa
Cited by: 43
Author(s): Wenbo Yang, Kun Wang, Jian Zhang, Jianchao Ma, Jianquan Liu, Tao Ma
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-34457-w

Dynamic evolution of inverted repeats in Euglenophyta plastid genomes
Cited by: 15
Author(s): Anna Karnkowska, Matthew S. Bennett, Richard E. Triemer
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0160457

Differential Assembly of Catalytic Interactions within the Conserved Active Sites of Two Ribozymes
Cited by: 0
Author(s): Sabine N. S. van Schie, Raghuvir N. Sengupta, Daniel Herschlag
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-01348-5

Three-dimensional modeling of single stranded DNA hairpins for aptamer-based biosensors
Cited by: 108
Author(s): Iman Jeddi, Leonor Saiz
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0001326

A High Quality Draft Consensus Sequence of the Genome of a Heterozygous Grapevine Variety
Cited by: 916
Author(s): Riccardo Velasco, Andrey Zharkikh, Michela Troggio, Dustin Cartwright, Alessandro Cestaro, Dmitry Pruss, Massimo Pindo, Lisa M. Fitzgerald, S. Vezzulli, Julia Reid, G. Malacarne, Diana Iliev, G. Coppola, Bryan Wardell, Diego Micheletti, Teresita Macalma, M. G. D. FACCI, Jeff T. Mitchell, Michele Perazzolli, Glenn Eldredge, Pamela Gatto, Rozan Oyzerski, Marco Moretto, Natalia Gutin, M. Stefanini, Yang Chen, C. Segala, Christine Davenport, L. Dematté, Amy Mraz, J. Battilana, Keith Stormo, Fabrizio Costa, Quanzhou Tao, Azeddine Si‐Ammour, Tim Harkins, Angie Lackey, Clotilde Perbost, Bruce E. Taillon, Alessandra Stella, Victor Solovyev, Jeffrey A. Fawcett, Lieven Sterck, Klaas Vandepoele, S. Grando, Stefano Toppo, C. Moser, Jerry S. Lanchbury, Robert Bogden, Mark H. Skolnick, Vittorio Sgaramella, S. K. Bhatnagar, Paolo Fontana, Alexander Gutin, Yves Van de Peer, F. Salamini, Roberto Viola
Software Mentions: 1
Published: about 17 years ago

10.1186/s12870-015-0523-4

Parallel subfunctionalisation of PsbO protein isoforms in angiosperms revealed by phylogenetic analysis and mapping of sequence variability onto protein structure
Cited by: 8
Author(s): Miloš Duchoslav, Lukáš Fischer
Software Mentions: 1
Published: over 9 years ago

10.7759/cureus.1039

Value-Based Care in the Worldwide Battle Against Cancer
Cited by: 15
Author(s): Niloufer J. Johansen, Christobel Saunders
Software Mentions: 1
Published: almost 8 years ago

10.4155/fso.15.15

Selective nuclear localization of siRNA by metallic versus semiconducting single wall carbon nanotubes in keratinocytes
Cited by: 5
Author(s): J. Torin Huzil, Evi Saliaj, М. В. Иванова, Marjan Gharagozloo, Maria Jimena Loureiro, Constanze Lamprecht, Andreas Korinek, Ding-Wen Chen, Marianna Földvári
Software Mentions: 1
Published: about 9 years ago

10.1186/s13059-017-1249-4

Stable centromere positioning in diverse sequence contexts of complex and satellite centromeres of maize and wild relatives
Cited by: 40
Author(s): Jonathan I. Gent, Na Wang, R. Kelly Dawe
Software Mentions: 1
Published: over 7 years ago

10.1155/2014/978609

Genomic Changes in an Attenuated ZB Strain of Foot-and-Mouth Disease Virus Serotype Asia1 and Comparison with Its Virulent Parental Strain
Cited by: 4
Author(s): Aiguo Xin, Mingwang Zhu, Zhenqi Peng, Qi Hu, Chenhong Shi, Defang Liao, Jihua Wang, Huachun Li
Software Mentions: 1
Published: almost 11 years ago

10.1007/s41048-015-0001-4

Physics-based RNA structure prediction
Cited by: 20
Author(s): Xiaojun Xu, Shijie Chen
Software Mentions: 1
Published: over 9 years ago

10.3390/molecules21111451

Accumulation of Stable Full-Length Circular Group I Intron RNAs during Heat-Shock
Cited by: 7
Author(s): Kasper Langebjerg Andersen, Bertrand Beckert, Benoı̂t Masquida, Steinar Johansen, Hans Bruun Nielsen
Software Mentions: 1
Published: about 8 years ago

10.1186/s13567-015-0291-z

Apramycin treatment affects selection and spread of a multidrug-resistant Escherichia coli strain able to colonize the human gut in the intestinal microbiota of pigs
Cited by: 7
Author(s): Ana Herrero-Fresno, Camilla Zachariasen, Monica Hegstad Hansen, Alexander Norup Nielsen, René S. Hendriksen, S. S. Nielsen, John Elmerdahl Olsen
Software Mentions: 1
Published: almost 9 years ago

10.3390/v11121102

Next-Generation Sequencing on Insectivorous Bat Guano: An Accurate Tool to Identify Arthropod Viruses of Potential Agricultural Concern
Cited by: 8
Author(s): Mathieu Bourgarel, Valérie Noël, Davies M. Pfukenyi, Johan Michaux, Adrien André, Pierre Becquart, Frédérique Cerqueira, Célia Barrachina, Vanina Boué, Loïc Talignani, Gift Matope, Dorothée Misse, Sergé Morand, Florian Liégeois
Software Mentions: 1
Published: about 5 years ago

10.1093/bioinformatics/btaa977

On the complexity of haplotyping a microbial community
Cited by: 14
Author(s): Samuel M. Nicholls, Wayne Aubrey, Kurt De Grave, Leander Schietgat, Christopher J. Creevey, Amanda Clare
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0156212

Investigating Salmonella Eko from Various Sources in Nigeria by Whole Genome Sequencing to Identify the Source of Human Infections
Cited by: 8
Author(s): Pimlapas Leekitcharoenphon, Ibrahim A. Raufu, Mette Thorup Nielsen, Birthe S. Rosenqvist Lund, J. A. Ameh, A. G. Ambali, Gitte Sørensen, Simon Le Hello, Frank Møller Aarestrup, René S. Hendriksen
Software Mentions: 1
Published: over 8 years ago

Ecosyste.ms: Papers

Projects: pypi: Assemble

Papers Mentioning Assemble 25