pypi projects | Ecosyste.ms: Papers

pypi: FishTaco

FishTaco: a metagenomic computational framework, aiming to identify the taxa that are driving functional shifts in microbiomes.
Papers that mentioned: 26

Very Likely Science (100)

pypi: alt

Web API level tests and test runner
Papers that mentioned: 26

Very Likely Science (65)

pypi: Fold

A binary encoding scheme (optionally keyed)
Papers that mentioned: 26

Very Likely Science (65)

pypi: seq2seq

Real valued sequence to sequence autoencoder
Papers that mentioned: 26

Very Likely Science (65)

pypi: shapes

Tools for analyzing geometric morphometic shape
Papers that mentioned: 26

Very Likely Science (100)

pypi: simpleM

My first Python package
Papers that mentioned: 26

Very Likely Science (65)

pypi: tsne

TSNE algorithms
Papers that mentioned: 26

Very Likely Science (96)

pypi: BitTorrent

UNKNOWN
Papers that mentioned: 26

Very Likely Science (65)

pypi: skimage

Dummy package that points to scikit-image
Papers that mentioned: 26

Very Likely Science (100)

pypi: CDF

This package handles files in NASA Common Data Format
Papers that mentioned: 26

Very Likely Science (80)

pypi: CLAM

Turns command-line tools into fully-fledged RESTful webservices with an auto-generated web-interface for human end-users.
Papers that mentioned: 26

Very Likely Science (100)

pypi: PEAK

The Python Enterprise Application Kit
Papers that mentioned: 25

Likely Science (40)

pypi: perm

Papers that mentioned: 25

Very Likely Science (65)

pypi: PinPoint

A fast geo toolkit for academic affiliation strings
Papers that mentioned: 25

Very Likely Science (80)

pypi: MetaPathways

MetaPathways is a modular pipeline to build PGDBs from Metagenomic sequences.
Papers that mentioned: 25

Very Likely Science (90)

pypi: Assemble

Assemble: Assemble the packages!
Papers that mentioned: 25

Very Likely Science (65)

pypi: DeepARG

Papers that mentioned: 25

Very Likely Science (65)

pypi: dms

database management service dashboard
Papers that mentioned: 25

Very Likely Science (65)

pypi: sqldf

A simple way to run SQL queries (SQLite3) on pandas.Dataframe objects.
Papers that mentioned: 25

Very Likely Science (65)

pypi: MicrobeCensus

A command-line tool for estimating average genome size from shotgun sequence data
Papers that mentioned: 25

Very Likely Science (100)

pypi: cor

Distributed modular computing framework that runs anywhere
Papers that mentioned: 25

Very Likely Science (65)

pypi: Flight

This is building towards a flight simulation
Papers that mentioned: 25

Very Likely Science (75)

pypi: CADET

CADET is a python interface to the CADET chromatography simulator
Papers that mentioned: 25

Very Likely Science (60)

pypi: PIMS

Python Image Sequence
Papers that mentioned: 25

Very Likely Science (100)

pypi: plan

A Python package for writing and deploying cron jobs with a clear and beautiful syntax.
Papers that mentioned: 25

Very Likely Science (65)

pypi: dadi

Fit population genetic models of demography and selection using diffusion approximations to the allele frequency spectrum
Papers that mentioned: 25

Very Likely Science (100)

pypi: migrate

A simple language agnostic database migration tool
Papers that mentioned: 25

Very Likely Science (65)

pypi: prime

Module with extremely simple functions based on prime numbers
Papers that mentioned: 25

Very Likely Science (65)

pypi: extraction

Extract basic info from HTML webpages.
Papers that mentioned: 25

Very Likely Science (65)

pypi: velocyto

RNA velocity analysis for single cell RNA-seq data
Papers that mentioned: 25

Very Likely Science (90)

pypi: Mother

Mother is a Python Orm oriented to introspection and self autoadaption.
Papers that mentioned: 25

Very Likely Science (65)

pypi: FMM

Numerical Computations
Papers that mentioned: 25

Very Likely Science (75)

pypi: Rx

Reactive Extensions (Rx) for Python
Papers that mentioned: 25

Very Likely Science (65)

pypi: SPE

Python IDE with Blender, Kiki, PyChecker, Remote debugger, Uml and wxGlade support
Papers that mentioned: 25

Very Likely Science (65)

pypi: MolVS

Molecule Validation and Standardization
Papers that mentioned: 25

Very Likely Science (80)

pypi: sciplot

Format Matplotlib scientific plots
Papers that mentioned: 24

Very Likely Science (100)

pypi: vmd

Terminal Markdown Renderer
Papers that mentioned: 24

Very Likely Science (90)

pypi: pcalg

CPDAG Estimation using PC-Algorithm
Papers that mentioned: 24

Very Likely Science (100)

pypi: arcgis

ArcGIS API for Python
Papers that mentioned: 24

Very Likely Science (90)

pypi: ProtoNet

A lightweight, versatile framework for easy neural net prototyping and research
Papers that mentioned: 24

Very Likely Science (75)

pypi: MCML

Semi-supervised Dimensionality Reduction for Multi-Class, Multi-Label Data
Papers that mentioned: 24

Very Likely Science (100)

pypi: umap

UNIST synthesis MAP solution
Papers that mentioned: 24

Very Likely Science (65)

pypi: Pass

The pythonic awesome stylesheet language
Papers that mentioned: 24

Very Likely Science (65)

pypi: Comix

A GTK+ comic book viewer for .cbz, .cbr and .cbt files.
Papers that mentioned: 24

Very Likely Science (80)

pypi: primer3plus

An easy-to-use Python API for Primer3 primer design.
Papers that mentioned: 24

Very Likely Science (100)

pypi: fit

FIT file I/O
Papers that mentioned: 24

Very Likely Science (65)

pypi: kraken

OCR/HTR engine for all the languages
Papers that mentioned: 24

Very Likely Science (80)

pypi: pad

Very flexible text editor based on Tk
Papers that mentioned: 24

Very Likely Science (65)

pypi: NPC

Parallel Processing in Network Devices
Papers that mentioned: 24

Very Likely Science (75)

pypi: goatools

Python scripts to find enrichment of GO terms
Papers that mentioned: 24

Very Likely Science (100)

pypi: rsq

Python Package for RNA structurome quantification analysis.
Papers that mentioned: 24

Very Likely Science (90)

pypi: PRC

Python Remote Console
Papers that mentioned: 24

Very Likely Science (65)

pypi: GDM

A language-agnostic
Papers that mentioned: 24

Very Likely Science (65)

pypi: vt

VirusTotal Full API
Papers that mentioned: 24

Likely Science (55)

pypi: imblearn

Toolbox for imbalanced dataset in machine learning.
Papers that mentioned: 24

Very Likely Science (75)

pypi: Wand

Ctypes-based simple MagickWand API binding for Python
Papers that mentioned: 24

Very Likely Science (100)

pypi: phonopy

This is the phonopy module.
Papers that mentioned: 24

Very Likely Science (100)

pypi: ParmEd

Inter-package toolkit for molecular mechanical simulations
Papers that mentioned: 23

Very Likely Science (100)

pypi: pc

process control -- easy fork-exec and pipe with I/O redirection
Papers that mentioned: 23

Very Likely Science (65)

pypi: xds

Loading xds structure
Papers that mentioned: 23

Very Likely Science (65)

pypi: CSIA

CRISPR Sequence Indel Analyze
Papers that mentioned: 23

Very Likely Science (65)

pypi: glimmer

Glimmer is a library built to implement content management systems for python web applications.
Papers that mentioned: 23

Unlikely Science (15)

pypi: stan

Papers that mentioned: 23

Very Likely Science (65)

pypi: Gecko

A framework for building applications to communicate with Exosite
Papers that mentioned: 23

Very Likely Science (65)

pypi: time

Conversion of given time input into proper format
Papers that mentioned: 23

Very Likely Science (65)

pypi: ctree

A C-family AST implementation designed to be an IR for DSL compilers.
Papers that mentioned: 23

Very Likely Science (65)

pypi: merge

A simple function of merge-sort
Papers that mentioned: 23

Very Likely Science (65)

pypi: flash

Fast tool
Papers that mentioned: 23

Very Likely Science (65)

pypi: simulation

simulation functions
Papers that mentioned: 23

Very Likely Science (90)

pypi: bootstrap

Papers that mentioned: 23

Very Likely Science (65)

pypi: Mill

Alternative logging framework for Python
Papers that mentioned: 23

Very Likely Science (65)

pypi: GGA

Interact with Georgia General Assembly website data
Papers that mentioned: 23

Likely Science (40)

pypi: Checkpoint

Checkpoint is a simple media archive management system.
Papers that mentioned: 23

Very Likely Science (65)

pypi: scikit-allel

A Python package for exploring and analysing genetic variation data.
Papers that mentioned: 23

Very Likely Science (100)

pypi: StarCluster

StarCluster is a utility for creating and managing computing clusters hosted on Amazon's Elastic Compute Cloud (EC2).
Papers that mentioned: 23

Likely Science (55)

pypi: lhs

Latin hypercube sampler for scenario modelling
Papers that mentioned: 23

Very Likely Science (90)

pypi: proml

Add a short description here!
Papers that mentioned: 23

Very Likely Science (100)

pypi: BDT

Simple library to write decision trees
Papers that mentioned: 23

Very Likely Science (65)

pypi: Assessor

Django Assessment App
Papers that mentioned: 23

Very Likely Science (65)

pypi: mda

Analysis Tools for MD Simulations
Papers that mentioned: 23

Very Likely Science (75)

pypi: annotation

Papers that mentioned: 23

Very Likely Science (65)

pypi: optmatch

command line parsing library
Papers that mentioned: 23

Very Likely Science (65)

pypi: compare

Alternative syntax for comparing/asserting expressions in Python. Supports pluggable matchers for custom comparisons.
Papers that mentioned: 23

Very Likely Science (75)

pypi: pgls

CLI utility to display postgres database information as a tree.
Papers that mentioned: 23

Likely Science (40)

pypi: stacks

Build scripts, applications and servers using the concept of facilities operating in a stack
Papers that mentioned: 22

Very Likely Science (65)

pypi: Scrapy

A high-level Web Crawling and Web Scraping framework
Papers that mentioned: 22

Very Likely Science (100)

pypi: gnm

Rock n Rolling MCMC Sampler
Papers that mentioned: 22

Very Likely Science (80)

pypi: relax

Utilities to make Django and CouchDB play more nicely with one another.
Papers that mentioned: 22

Very Likely Science (65)

pypi: mac

Technology agnostic orchestration framework
Papers that mentioned: 22

Very Likely Science (80)

pypi: popart

Population based training for Pytorch models.
Papers that mentioned: 22

Very Likely Science (65)

pypi: calc

A simple module with the basic functions of a calculator and the calculator itself.
Papers that mentioned: 22

Very Likely Science (65)

pypi: chewBBACA

A complete suite for gene-by-gene schema creation and strain identification.
Papers that mentioned: 22

Very Likely Science (100)

pypi: PRIM

Patient Rule Induction Method for Python
Papers that mentioned: 22

Very Likely Science (100)

pypi: QMS

Query Made Simple
Papers that mentioned: 22

Very Likely Science (65)

pypi: d3

A D3.js programming API for python
Papers that mentioned: 22

Very Likely Science (65)

pypi: SANE

Python modules for the SANE and pxc200 modules
Papers that mentioned: 22

Very Likely Science (65)

pypi: model

Object Relational Mapper (SQL database wrapper)
Papers that mentioned: 22

Very Likely Science (65)

pypi: fcs

A simple, powerful, and open-source time tracker from the command line
Papers that mentioned: 22

Very Likely Science (65)

pypi: jieba

Chinese Words Segmentation Utilities
Papers that mentioned: 22

Very Likely Science (65)

pypi: CMT

Celeria Map Toolkit, can convert different map formats from one into another.
Papers that mentioned: 22

Very Likely Science (65)

pypi projects 9,932