pypi: relax | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0023947

Rational Design of Temperature-Sensitive Alleles Using Computational Structure Prediction
Cited by: 19
Author(s): Christopher S. Poultney, Glenn L. Butterfoss, Michelle Gutwein, Kevin Drew, David Gresham, Kristin C. Gunsalus, Dennis Shasha, Richard Bonneau
Software Mentions: 8
Published: about 13 years ago

10.1016/j.csbj.2021.05.005

Comparison of the pH- and thermally-induced fluctuations of a therapeutic antibody Fab fragment by molecular dynamics simulation
Cited by: 6
Author(s): Cheng Zhang, Nuria Codina, Jiazhi Tang, Haoran Yu, Nesrine Chakroun, Frank Kozielski, Paul A. Dalby
Software Mentions: 6
Published: almost 4 years ago

10.1111/mec.15539

No evidence for accumulation of deleterious mutations and fitness degradation in clonal fish hybrids: Abandoning sex without regrets
Cited by: 16
Author(s): Ján Kočí, Jan Röslein, Jan Pačes, Jan Kotusz, Karel Halačka, Ján Koščo, Jakub Fedorčák, Nataliia Iakovenko, Karel Janko
Software Mentions: 5
Published: over 4 years ago

10.1093/bioinformatics/btu166

relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data
Cited by: 44
Author(s): Sébastien Morin, Troels Emtekær Linnet, Mathilde Lescanne, Paul Schanda, Gary S. Thompson, Martin Tollinger, Kaare Teilum, Stéphane M. Gagné, Dominique Marion, Christian Griesinger, Martin Blackledge, Edward J. d’Auvergne
Software Mentions: 4
Published: over 10 years ago

10.1007/s10858-018-0220-3

NMR-STAR: comprehensive ontology for representing, archiving and exchanging data from nuclear magnetic resonance spectroscopic experiments
Cited by: 28
Author(s): Eldon L. Ulrich, Kumaran Baskaran, Hesam Dashti, Yannis Ioannidis, Miron Livny, Pedro Romero, Dimitri Maziuk, Jonathan R. Wedell, Hongyang Yao, Hamid R. Eghbalnia, Jeffrey C. Hoch, John L. Markley
Software Mentions: 4
Published: almost 6 years ago

10.7554/eLife.16761

Origin of a folded repeat protein from an intrinsically disordered ancestor
Cited by: 40
Author(s): Hongbo Zhu, Edgardo Sepúlveda, M.D. Hartmann, Manjunatha Kogenaru, Astrid Ursinus, Eva Sulz, R. Albrecht, Murray Coles, Jörg Martin, Andrei N. Lupas
Software Mentions: 4
Published: about 8 years ago

10.1186/s40246-020-00295-z

KVarPredDB: a database for predicting pathogenicity of missense sequence variants of keratin genes associated with genodermatoses
Cited by: 3
Author(s): Yuyi Ying, Lu Lu, Santasree Banerjee, Lizhen Xu, Qiang Zhao, Hao Wu, Ruiqi Li, Xiao Xu, Hua Yu, Dante Neculai, Yongmei Xi, Fan Yang, Jiale Qin, Chen Li
Software Mentions: 3
Published: almost 4 years ago

10.7554/eLife.46574

Structural mapping of oligomeric intermediates in an amyloid assembly pathway
Cited by: 43
Author(s): Theodoros K. Karamanos, Matthew P. Jackson, Antonio N. Calabrese, Sophia C. Goodchild, Emma E. Cawood, Gary S. Thompson, Arnout P. Kalverda, Eric W. Hewitt, Sheena E. Radford
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0020420

VPS29 Is Not an Active Metallo-Phosphatase but Is a Rigid Scaffold Required for Retromer Interaction with Accessory Proteins
Cited by: 52
Author(s): James Swarbrick, Daniel Shaw, Sandeep Chhabra, Rajesh Ghai, Eugene Valkov, Suzanne J. Norwood, Matthew N. Seaman, Brett M. Collins
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0049876

Effects of Molecular Crowding on the Dynamics of Intrinsically Disordered Proteins
Cited by: 82
Author(s): Elio A. Cino, Mikko Karttunen, Wing‐Yiu Choy
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pcbi.1004398

An Integrated Framework Advancing Membrane Protein Modeling and Design
Cited by: 140
Author(s): Rebecca F. Alford, Julia Koehler Leman, Brian D. Weitzner, Amanda Duran, Drew C. Tilley, Assaf Elazar, Jeffrey J. Gray
Software Mentions: 2
Published: about 9 years ago

10.1074/jbc.M115.682203

Structure of a CGI-58 Motif Provides the Molecular Basis of Lipid Droplet Anchoring
Cited by: 41
Author(s): Andras Boeszoermenyi, Harald M. Nagy, Haribabu Arthanari, Christoph Pillip, Hanna Lindermuth, Rafael E. Luna, Gerhard Wagner, Rudolf Zechner, Klaus Zangger, Monika Oberer
Software Mentions: 2
Published: about 9 years ago

10.1007/s10858-020-00350-w

RING NMR dynamics: software for analysis of multiple NMR relaxation experiments
Cited by: 9
Author(s): Martha A. Beckwith, Teddy Erazo-Colon, B. V. Johnson
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-018-23821-5

Structural basis of interaction between dimeric cyclophilin 1 and Myb1 transcription factor in Trichomonas vaginalis
Cited by: 3
Author(s): Tesmine Martin, Yuan‐Chao Lou, Chun Chou, Shu‐Yi Wei, Sushant Sadotra, Chao-Cheng Cho, Meng-Hsuan Lin, Jung-Hsiang Tai, Chun‐Hua Hsu, Chinpan Chen
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0003820

NMRDyn: A Program for NMR Relaxation Studies of Protein Association
Cited by: 1
Author(s): Conan K. Wang, Horst Joachim Schirra, David J. Craik
Software Mentions: 2
Published: almost 16 years ago

10.1016/j.jmb.2007.02.055

Global Changes in Local Protein Dynamics Reduce the Entropic Cost of Carbohydrate Binding in the Arabinose-binding Protein
Cited by: 66
Author(s): Christopher A. MacRaild, Antonio Hernández Daranas, Agnieszka K. Bronowska, Steve W. Homans
Software Mentions: 1
Published: over 17 years ago

10.1002/pro.3822

Differences in the chitinolytic activity of mammalian chitinases on soluble and insoluble substrates
Cited by: 12
Author(s): Benjamin A. Barad, Lin Liu, Roberto Efrain Diaz, Ralp Basilio, Steven J. Van Dyken, Richard M. Locksley, James S. Fraser
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0140518

A High Affinity hRpn2-Derived Peptide That Displaces Human Rpn13 from Proteasome in 293T Cells
Cited by: 21
Author(s): Xiuxiu Lu, Fen Liu, Sarah Durham, Sergey G. Tarasov, Kylie J. Walters
Software Mentions: 1
Published: about 9 years ago

10.3390/pathogens9100826

Structural and Functional Analysis of BBA03, Borrelia burgdorferi Competitive Advantage Promoting Outer Surface Lipoprotein
Cited by: 0
Author(s): Jēkabs Fridmanis, Raitis Bobrovs, Kalvis Brangulis, Kaspars Tārs, Kristaps Jaudzems
Software Mentions: 1
Published: about 4 years ago

10.1021/jacsau.0c00094

Entropy–Entropy Compensation between the Protein, Ligand, and Solvent Degrees of Freedom Fine-Tunes Affinity in Ligand Binding to Galectin-3C
Cited by: 13
Author(s): Johan Wallerstein, Vilhelm Ekberg, Majda Misini Ignjatović, Rohit Kumar, Octav Caldararu, Kristoffer Peterson, Sven Wernersson, Ulrika Brath, Hakon Leffler, Esko Oksanen, D.T. Logan, Ulf J. Nilsson, Ulf Ryde, Mikael Akke
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0052283

Chimeric β-Lactamases: Global Conservation of Parental Function and Fast Time-Scale Dynamics with Increased Slow Motions
Cited by: 16
Author(s): Christopher M. Clouthier, Sébastien Morin, S. Gobeil, Nicolas Doucet, Jonathan Blanchet, Élisabeth Nguyen, Stéphane M. Gagné, Joelle N. Pelletier
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0109108

The Structure of an LIM-Only Protein 4 (LMO4) and Deformed Epidermal Autoregulatory Factor-1 (DEAF1) Complex Reveals a Common Mode of Binding to LMO4
Cited by: 14
Author(s): Soumya Joseph, Ann H. Kwan, Philippa H. Stokes, Joel P. Mackay, Liza Cubeddu, Jacqueline M. Matthews
Software Mentions: 1
Published: about 10 years ago

Ecosyste.ms: Papers

Projects: pypi: relax

Papers Mentioning relax 22