Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: ProtoNet

https://packages.ecosyste.ms/registries/pypi.org/packages/ProtoNet

A lightweight, versatile framework for easy neural net prototyping and research
1 version
Latest release: almost 4 years ago

Papers Mentioning ProtoNet 24

JACOP: A simple and robust method for the automated classification of protein sequences with modular architecture
Cited by: 22
Author(s): Peter Sperisen, Marco Pagni
Software Mentions: 4
Published: over 19 years ago

10.1007/s13205-014-0231-z

Structure-based functional annotation of putative conserved proteins having lyase activity from Haemophilus influenzae
Cited by: 15
Author(s): Mohd Shahbaaz, Faizan Ahmad, Md. Imtaiyaz Hassan
Software Mentions: 4
Published: over 10 years ago

10.1093/bioinformatics/btv398

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation
Cited by: 89
Author(s): Sayoni Das, David A. Lee, Ian Sillitoe, Natalie L. Dawson, Jonathan G. Lees, Christine A. Orengo
Software Mentions: 3
Published: over 9 years ago

10.1186/1756-0381-2-3

Partitioning clustering algorithms for protein sequence data sets
Cited by: 17
Author(s): Sondès Fayech, Nadia Essoussi, Mohamed Limam
Software Mentions: 3
Published: over 15 years ago

10.1371/journal.pone.0084263

Functional Annotation of Conserved Hypothetical Proteins from Haemophilus influenzae Rd KW20
Cited by: 74
Author(s): Mohd Shahbaaz, Md. Imtaiyaz Hassan, Faizan Ahmad
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2105-5-196

Cited by: 36
Author(s): N. Kaplan, Moriah Friedlich, Menachem Fromer, Michal Linial
Software Mentions: 2
Published: almost 21 years ago

10.1007/s13205-014-0274-1

Structure-based function analysis of putative conserved proteins with isomerase activity from Haemophilus influenzae
Cited by: 13
Author(s): Mohd Shahbaaz, Faizan Ahmad
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0124177

Identification of Functional Candidates amongst Hypothetical Proteins of Treponema pallidum ssp. pallidum
Cited by: 37
Author(s): Ahmad Abu Turab Naqvi, Mohd Shahbaaz, Faizan Ahmad
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0058537

DendroBLAST: Approximate Phylogenetic Trees in the Absence of Multiple Sequence Alignments
Cited by: 44
Author(s): Steven Kelly, Philip K. Maini
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0190913

Gene regulation in Kluyveromyces marxianus in the context of chromosomes
Cited by: 5
Author(s): Du Toit W. P. Schabort, S. G. Kilian, J. C. du Preez
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0002247

Global Considerations in Hierarchical Clustering Reveal Meaningful Patterns in Data
Cited by: 17
Author(s): Roy Varshavsky, D. Horn, Michal Linial
Software Mentions: 1
Published: over 16 years ago

10.1002/cfg.328

Fishing With (Proto)Net—A Principled Approach to Protein Target Selection
Cited by: 0
Author(s): Michal Linial
Software Mentions: 1
Published: almost 22 years ago

10.1093/database/bau122

ProtoBug: functional families from the complete proteomes of insects
Cited by: 1
Author(s): Nadav Rappoport, Michal Linial
Software Mentions: 1
Published: almost 10 years ago

10.1155/2018/6813467

A Computational Approach Using Bioinformatics to Screening Drug Targets for Leishmania infantum Species
Cited by: 10
Author(s): Miguel Á. Chávez-Fumagalli, Mônica Santos Schneider, Daniela P. Lage, Grasiele de Sousa Vieira Tavares, Débora V.C. Mendonça, Thaís Teodoro de Oliveira Santos, Rodrigo Maia de Pádua, Ricardo Andrez Machado-de-Ávila, João Paulo Viana Leite, Eduardo Anton̂io Ferraz Coelho
Software Mentions: 1
Published: almost 7 years ago

10.1002/jbmr.559

RANK‐dependent autosomal recessive osteopetrosis: Characterization of five new cases with novel mutations
Cited by: 63
Author(s): Alessandra Pangrazio, Barbara Cassani, Matteo M. Guerrini, Julie C. Crockett, Veronica Marrella, Luca Zammataro, Dario Strina, Ansgar Schulz, Claire Schlack, Uwe Kornak, David Mellis, Angela Duthie, Miep Helfrich, Anne Durandy, Despina Moshous, Ashok Vellodi, Robert Chiesa, Paul Veys, Nadia Lo Iacono, Paolo Vezzoni, Alain Fischer, Anna Villa, Cristina Sobacchi
Software Mentions: 1
Published: almost 13 years ago

10.3390/s21010275

Real-Time Instance Segmentation of Traffic Videos for Embedded Devices
Cited by: 12
Author(s): Ruben Panero Martinez, Ionut Schiopu, Bruno Cornelis, Adrian Munteanu
Software Mentions: 1
Published: almost 4 years ago

10.3390/s21051566

RS-SSKD: Self-Supervision Equipped with Knowledge Distillation for Few-Shot Remote Sensing Scene Classification
Cited by: 12
Author(s): Pei Zhang, Ying Li, Dong Wang, Jiyue Wang
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms19010129

Small Myristoylated Protein-3, Identified as a Potential Virulence Factor in Leishmania amazonensis, Proves to be a Protective Antigen against Visceral Leishmaniasis
Cited by: 15
Author(s): Marcelo Pires-Oliveira, Vívian T. Martins, Thaís T.O. Santos, Daniela P. Lage, Fernanda F. Ramos, Beatriz C.S. Salles, Lourena E. Costa, Daniel Lucas Santos Dias, Patrícia A.F. Ribeiro, Mônica Santos Schneider, Ricardo Andrez Machado-de-Ávila, Antônio Lúcio Teixeira, Eduardo Anton̂io Ferraz Coelho, Miguel Á. Chávez-Fumagalli
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2105-7-277

EVEREST: automatic identification and classification of protein domains in all protein sequences
Cited by: 31
Author(s): Elon Portugaly, Amir Harel, Michal Linial, Michal Linial
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2105-6-15

Cited by: 68
Author(s): Antje Krause, Jens Stoye, Martin Vingron
Software Mentions: 1
Published: almost 20 years ago

10.1186/1471-2105-14-S3-S11

Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex
Cited by: 2
Author(s): Nadav Rappoport, Michal Linial
Software Mentions: 1
Published: almost 12 years ago

10.1155/2020/2562950

Functional and Structural Analysis of Predicted Proteins Obtained fromHomo sapiens’Minisatellite 33.15-Tagged Transcript pAKT-45 Variants
Cited by: 1
Author(s): Mohd Shahbaaz, Awad S. Alsamghan, Arshi Malik, Sarah Afaq, Afaf S. Alwabli, Irfan Ahmad, Mostafa A. Hussien, Mohammad Zubair, Farha Fatima, Shamina Begum, Othman R. Alzahrani, Mohammed Tarique
Software Mentions: 1
Published: over 4 years ago

10.1155/2018/9451547

Comparative Hemolymph Proteomic and Enzymatic Analyses of Two Strains of Rhipicephalus (Boophilus) microplus Ticks Resistant and Susceptible to Ixodicides
Cited by: 10
Author(s): Hugo Aguilar-Díaz, Marcela Esquivel-Velázquez, Rosa Estela Quiroz-Castañeda, Estefan Miranda-Miranda, R. J. P. Conde-Baeye, Mayra Cobaxin-Cárdenas, Pedro Ostoa‐Saloma, Raquel Cossío-Bayúgar
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008227

Few-shot learning for classification of novel macromolecular structures in cryo-electron tomograms
Cited by: 6
Author(s): Ran Li, Liangyong Yu, Bo Zhou, Xiangrui Zeng, Zhenyu Wang, Xin Yang, Jing Zhang, Xin Gao, Rui Jiang, Min Xu
Software Mentions: 1
Published: about 4 years ago