pypi: PRC | Projects | Ecosyste.ms: Papers

10.1186/s40168-021-01054-5

A multi-OMIC characterisation of biodegradation and microbial community succession within the PET plastisphere
Cited by: 39
Author(s): Robyn J. Wright, Rafael Bosch, Morgan G. I. Langille, Matthew I. Gibson, Joseph Alexander Christie-Oleza
Software Mentions: 9
Published: over 3 years ago

10.1186/1472-6807-13-2

Designing and benchmarking the MULTICOM protein structure prediction system
Cited by: 25
Author(s): Jilong Li, Xin Deng, Jesse Eickholt, Jianlin Cheng
Software Mentions: 7
Published: over 11 years ago

10.1371/journal.pone.0166358

Accelerating Information Retrieval from Profile Hidden Markov Model Databases
Cited by: 0
Author(s): A. Faleh Tamimi, Yaqoub Ashhab, Hashem Tamimi
Software Mentions: 4
Published: almost 8 years ago

10.1186/1471-2105-12-275

AlignHUSH: Alignment of HMMs using structure and hydrophobicity information
Cited by: 11
Author(s): Krishnadev Oruganty, Narayanaswamy Srinivasan
Software Mentions: 4
Published: over 13 years ago

10.3389/fmolb.2021.617176

BIO-GATS: A Tool for Automated GPCR Template Selection Through a Biophysical Approach for Homology Modeling
Cited by: 3
Author(s): Amara Jabeen, Ramya Vijayram, Shoba Ranganathan
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-92395-6

MULTICOM2 open-source protein structure prediction system powered by deep learning and distance prediction
Cited by: 1
Author(s): Tai Tsun Wu, Jian Liu, Zhiye Guo, Jie Hou, Jianlin Cheng
Software Mentions: 3
Published: over 3 years ago

10.1186/s12859-015-0775-x

A large-scale conformation sampling and evaluation server for protein tertiary structure prediction and its assessment in CASP11
Cited by: 21
Author(s): Jilong Li, Renzhi Cao, Jianlin Cheng
Software Mentions: 3
Published: about 9 years ago

10.1155/2013/172784

<i>In Silico</i>Determination and Validation of Baumannii Acinetobactin Utilization A Structure and Ligand Binding Site
Cited by: 28
Author(s): Fatemeh Sefid, Iraj Rasooli, Abolfazl Jahangiri
Software Mentions: 3
Published: almost 12 years ago

10.1186/1746-4811-5-18

Computer aided data acquisition tool for high-throughput phenotyping of plant populations
Cited by: 26
Author(s): Raju Naik Vankadavath, Appibhai Jakir Hussain, Reddaiah Bodanapu, Eros Kharshiing, P. Osman Basha, S. Dutta Gupta, Yellamaraju Sreelakshmi, Rameshwar Sharma
Software Mentions: 3
Published: almost 15 years ago

10.2174/138920209789177575

Hidden Markov Models and their Applications in Biological Sequence Analysis
Cited by: 247
Author(s): Byung-Jun Yoon
Software Mentions: 3
Published: about 15 years ago

10.12688/f1000research.12301.2

In silico analysis of natural compounds targeting structural and nonstructural proteins of chikungunya virus
Cited by: 16
Author(s): Jaspreet Jain, Anchala Kumari, Pallavi Somvanshi, Abhinav Grover, S. Somnath Pai, Sujatha Sunil
Software Mentions: 3
Published: almost 7 years ago

10.1002/prot.25697

Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13
Cited by: 142
Author(s): Jie Hou, Tai Tsun Wu, Renzhi Cao, Jianlin Cheng
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-64755-1

Atypical chemokine receptor ACKR2-V41A has decreased CCL2 binding, scavenging, and activation, supporting sustained inflammation and increased Alzheimer’s disease risk
Cited by: 6
Author(s): Josue D. Gonzalez Murcia, Allen Weinert, Claudia M. Tellez Freitas, Daniel K. Arens, Meganne Ferrel, Julianne H. Grose, Perry G. Ridge, Eric Wilson, John Kauwe, K. Scott Weber
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2016.01817

Finding Potential Therapeutic Targets against Shigella flexneri through Proteome Exploration
Cited by: 19
Author(s): Mohammad Uzzal Hossain, Mukhtar A. Khan, Abu Hashem, Md. Monirul Islam, Mohammad Neaz Morshed, Chaman Ara Keya, Md. Salimullah
Software Mentions: 2
Published: almost 8 years ago

10.1186/1471-2164-9-455

Unassigned MURF1 of kinetoplastids codes for NADH dehydrogenase subunit 2
Cited by: 12
Author(s): Sivakumar Kannan, Gertraud Burger
Software Mentions: 2
Published: almost 17 years ago

10.1186/1743-422X-6-62

Hepatitis C virus NS4B carboxy terminal domain is a membrane binding domain
Cited by: 20
Author(s): Jolanda M. P. Liefhebber, Bernd W. Brandt, R. Broer, Willy J. M. Spaan, Hans C. van Leeuwen
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0089195

Defining the Interactions and Role of DCAF1/VPRBP in the DDB1-Cullin4A E3 Ubiquitin Ligase Complex Engaged by HIV-1 Vpr to Induce a G2 Cell Cycle Arrest
Cited by: 15
Author(s): Francine C A Gérard, Ruifeng Yang, Bizhan Romani, Alexis Poisson, Jean-Philippe Belzile, Nicole Rougeau, Éric A. Cohen
Software Mentions: 2
Published: over 10 years ago

10.3390/antibiotics9040148

Development of Staphylococcus Enzybiotics: The Ph28 Gene of Staphylococcus epidermidis Phage PH15 Is a Two-Domain Endolysin
Cited by: 5
Author(s): Magdy Mohamed Muharram, Ashraf Abulhamd, Mohammed F. Aldawsari, Mohammed H. Alqarni, Nikolaos E. Labrou
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1006946

TASmania: A bacterial Toxin-Antitoxin Systems database
Cited by: 65
Author(s): Hatice Akarsu, Patricia Bordes, Moise Mansour, Donna-Joe Bigot, Pierre Genevaux, Laurent Falquet
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0138787

Cysteine-Rich Atrial Secretory Protein from the Snail Achatina achatina: Purification and Structural Characterization
Cited by: 6
Author(s): Sergey Shabelnikov, Artem Kiselev
Software Mentions: 1
Published: about 9 years ago

10.1107/S1744309110001685

DUFs: families in search of function
Cited by: 192
Author(s): Alex Bateman, Penny Coggill
Software Mentions: 1
Published: over 14 years ago

10.12688/f1000research.21104.1

Profile Comparer Extended: phylogeny of lytic polysaccharide monooxygenase families using profile hidden Markov model alignments
Cited by: 4
Author(s): Gerben P. Voshol, Peter J. Punt, Erik Vijgenboom
Software Mentions: 1
Published: about 5 years ago

10.3389/fchem.2019.00261

Synthesis, Biological Evaluation, and Molecular Modeling Studies of New Thiadiazole Derivatives as Potent P2X7 Receptor Inhibitors
Cited by: 13
Author(s): Daniel T. G. Gonzaga, Felipe H. Oliveira, Natalia Lidmar von Ranke, G. Q. Pinho, Juliana Salles, Murilo Lamim Bello, Carlos Rangel Rodrigues, Helena C. Castro, Hellen Valério Chaves Moura de Souza, Caroline Rodrigues Chaves Dos Reis, Rennan Papaleo Paes Leme, João Carlos Martins Mafra, Luiz C. S. Pinheiro, Lucas Villas Bôas Hoelz, Núbia Boechat, Robson Xavier Faria
Software Mentions: 1
Published: over 5 years ago

10.1155/2015/198214

Identification of Novel Inhibitors for Tobacco Mosaic Virus Infection in Solanaceae Plants
Cited by: 4
Author(s): Archana Prabahar, Subashini Swaminathan, L. Arul, Jegadeesan Ramalingam
Software Mentions: 1
Published: about 9 years ago

Ecosyste.ms: Papers

Projects: pypi: PRC

Papers Mentioning PRC 24