Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: stacks

https://packages.ecosyste.ms/registries/pypi.org/packages/stacks

Build scripts, applications and servers using the concept of facilities operating in a stack
1 version
Latest release: about 13 years ago
35 downloads last month

Papers Mentioning stacks 22

Sex matters: Otolith shape and genomic variation in deacon rockfish (Sebastes diaconus)
Cited by: 18
Author(s): Felix Vaux, Leif K. Rasmuson, Lisa A. Kautzi, Polly S. Rankin, Matthew T. O. Blume, Kelly Lawrence, Sandra Bohn, Kathleen G. O’Malley
Software Mentions: 17
Published: about 5 years ago

10.1111/eva.13202

Adaptive markers distinguish North and South Pacific Albacore amid low population differentiation
Cited by: 15
Author(s): Felix Vaux, Sandra Bohn, John R. Hyde, Kathleen G. O’Malley
Software Mentions: 15
Published: over 3 years ago

10.1038/s41437-019-0204-4

Extreme mito-nuclear discordance in a peninsular lizard: the role of drift, selection, and climate
Cited by: 24
Author(s): Pedro Henrique Bernardo, Santiago Sánchez‐Ramírez, Santiago J. Sánchez-Pacheco, Sergio Ticul Álvarez-Castañeda, Eduardo Felipe Aguilera-Miller, Fausto R. Méndez–de la Cruz, Robert W. Murphy
Software Mentions: 10
Published: over 5 years ago

10.1038/s41437-021-00418-9

Population genomics and conservation management of a declining tropical rodent
Cited by: 9
Author(s): Brenton von Takach, Cara E. Penton, Brett P. Murphy, Ian J. Radford, Hugh F. Davies, Brydie M. Hill, Sam C. Banks
Software Mentions: 9
Published: over 3 years ago

10.1111/1755-0998.13362

Chromosome‐scale assembly of the genome of Salixdunnii reveals a male‐heterogametic sex determination system on chromosome 7
Cited by: 24
Author(s): Li He, Kai‐Hua Jia, Rengang Zhang, Yuan Wang, Tian-Le Shi, Zhichao Li, Si-Wen Zeng, Xin-Jie Cai, Natascha D. Wagner, Elvira Hörandl, Aline Muyle, Ke Yang, Deborah Charlesworth, Jian‐Feng Mao
Software Mentions: 9
Published: over 3 years ago

10.1111/mec.15239

Host plant‐related genomic differentiation in the European cherry fruit fly, Rhagoletis cerasi
Cited by: 10
Author(s): Vid Baković, Hannes Schuler, Martin Schebeck, Jeffrey L. Feder, Christian Stauffer, Gregory J. Ragland
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pgen.1008822

An Africa-wide genomic evolution of insecticide resistance in the malaria vector Anopheles funestus involves selective sweeps, copy number variations, gene conversion and transposons
Cited by: 37
Author(s): Gareth D. Weedall, Jacob M. Riveron, Jack Hearn, Helen Irving, Colince Kamdem, Caroline Fouet, Bradley J. White, Charles S. Wondji
Software Mentions: 6
Published: over 4 years ago

10.1002/ece3.5793

Phylogeography and population genetics of pine butterflies: Sky islands increase genetic divergence
Cited by: 12
Author(s): Dale A. Halbritter, Caroline Storer, Akito Y. Kawahara, Jaret C. Daniels
Software Mentions: 6
Published: about 5 years ago

10.1111/eva.13135

Genome‐wide diversity and habitat underlie fine‐scale phenotypic differentiation in the rainbow darter ( Etheostoma caeruleum )
Cited by: 9
Author(s): Daniel R. A. Oliveira, Brendan N. Reid, Sarah W. Fitzpatrick
Software Mentions: 5
Published: about 4 years ago

10.1111/mec.13550

Bs<scp>RAD</scp>seq: screening <scp>DNA</scp> methylation in natural populations of non‐model species
Cited by: 95
Author(s): Emiliano Trucchi, Anna B. Mazzarella, Gregor D. Gilfillan, María Teresa Cáceres Lorenzo, Peter Schönswetter, Ovidiu Paun
Software Mentions: 5
Published: over 8 years ago

10.1002/ece3.6165

Insights into the neutral and adaptive processes shaping the spatial distribution of genomic variation in the economically important Moroccan locust ( Dociostaurus maroccanus )
Cited by: 4
Author(s): María José González‐Serna, Pedro J. Cordero, Joaquín Ortego
Software Mentions: 4
Published: over 4 years ago

10.1093/gbe/evw262

Salmonid chromosome evolution as revealed by a novel method for comparing RADseq linkage maps
Cited by: 38
Author(s): Ben J. G. Sutherland, Thierry Gosselin, Éric Normandeau, Manuel Lamothe, Nathalie Isabel, Céline Audet, Louis Bernatchez
Software Mentions: 4
Published: about 8 years ago

10.1002/ece3.2819

Outlier analyses to test for local adaptation to breeding grounds in a migratory arctic seabird
Cited by: 26
Author(s): Anna Tigano, Allison J. Shultz, Scott V. Edwards, Gregory J. Robertson, Vicki L. Friesen
Software Mentions: 4
Published: over 7 years ago

10.1111/eva.12907

Rattuspopulation genomics across the Haida Gwaii archipelago provides a framework for guiding invasive species management
Cited by: 11
Author(s): Bryson M. F. Sjodin, Robyn L. Irvine, Adam T. Ford, Gregg R. Howald, Michael A. Russello
Software Mentions: 4
Published: almost 5 years ago

10.3389/fpls.2021.644402

Construction of ddRADseq-Based High-Density Genetic Map and Identification of Quantitative Trait Loci for Trans-resveratrol Content in Peanut Seeds
Cited by: 12
Author(s): Huaiyong Luo, Jianbin Guo, Bin Yu, Weigang Chen, Huan Zhang, Xiaojing Zhou, Yuning Chen, Li Huang, Nian Liu, Xiaoping Ren, Liying Yan, Dongxin Huai, Yong Lei, Boshou Liao, Huifang Jiang
Software Mentions: 4
Published: over 3 years ago

10.1111/eva.12301

Contrasting genetic structure between mitochondrial and nuclear markers in the dengue fever mosquito from Rio de Janeiro: implications for vector control
Cited by: 37
Author(s): Gordana Rašić, Renata Schama, Rosanna Powell, Rafael Maciel-de-Freitas, Nancy M. Endersby‐Harshman, Igor Filipović, Gabriel Sylvestre, Renato Maspero, Ary A. Hoffmann
Software Mentions: 3
Published: about 9 years ago

10.1111/eva.12534

Applying landscape genomic tools to forest management and restoration of Hawaiian koa (Acacia koa) in a changing environment
Cited by: 40
Author(s): Paul F. Gugger, Christina T. Liang, Victoria L. Sork, Paul D. Hodgskiss, Jessica W. Wright
Software Mentions: 3
Published: about 7 years ago

10.1038/s42003-020-01431-0

Fairy circles in Namibia are assembled from genetically distinct grasses
Cited by: 2
Author(s): Christian Kappel, Nicola Illing, Cuong Nguyen Huu, Nichole N. Barger, Michael D. Cramer, Michael Lenhard, Jeremy J. Midgley
Software Mentions: 3
Published: about 4 years ago

10.1111/eva.12704

Population history provides foundational knowledge for utilizing and developing native plant restoration materials
Cited by: 26
Author(s): Rob Massatti, Holly R. Prendeville, Steve Larson, Bryce A. Richardson, Blair L. Waldron, Francis F. Kilkenny
Software Mentions: 3
Published: about 6 years ago

10.1111/1755-0998.13043

A genomic approach to inferring kinship reveals limited intergenerational dispersal in the yellow fever mosquito
Cited by: 47
Author(s): Moshe Jasper, Thomas L. Schmidt, Nazni Wasi Ahmad, Steven P. Sinkins, Ary A. Hoffmann
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0109850

Rapid SNP Discovery and a RAD-Based High-Density Linkage Map in Jujube (Ziziphus Mill.)
Cited by: 25
Author(s): Jin Zhao, Jianbo Jian, Guannan Liu, Jiurui Wang, Minjuan Lin, Ming Yao, Zhiguo Liu, Yingying Chen, Xiuyun Liu, Mengjun Liu
Software Mentions: 2
Published: about 10 years ago

10.1002/evl3.20

The genomic basis of cichlid fish adaptation within the deepwater “twilight zone” of Lake Malawi
Cited by: 19
Author(s): Christoph Hahn, Martin J. Genner, George F. Turner, Domino A. Joyce
Software Mentions: 2
Published: about 7 years ago