Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: xds

https://packages.ecosyste.ms/registries/pypi.org/packages/xds

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Latest release: over 5 years ago
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Papers Mentioning xds 23

10.1111/febs.13690
Structural and kinetic studies on RosA, the enzyme catalysing the methylation of 8-demethyl-8-amino-<scp>d</scp> -riboflavin to the antibiotic roseoflavin
Cited by: 13
Author(s): Chanakan Tongsook, M. Uhl, Frank Jankowitsch, Matthias Mack, Karl Gruber, Peter Macheroux
Software Mentions: 6
Published: over 8 years ago
10.1002/2211-5463.12259
Structural flexibility of human α-dystroglycan
Cited by: 12
Author(s): Sonia Covaceuszach, Manuela Bozzi, Maria Giulia Bigotti, Francesca Sciandra, Petr V. Konarev, Andrea Brancaccio, Alberto Cassetta
Software Mentions: 5
Published: over 7 years ago
10.1111/febs.12975
Collapse of the native structure caused by a single amino acid exchange in human<scp>NAD</scp>(P)H:quinone oxidoreductase<sup>1</sup>
Cited by: 53
Author(s): Wolf‐Dieter Lienhart, Venugopal Gudipati, M. Uhl, Alexandra Binter, Sergio Pulido, Robert Saf, Klaus Zangger, Karl Gruber, Peter Macheroux
Software Mentions: 4
Published: about 10 years ago
10.1107/S0907444909047337
<i>XDS</i>
Cited by: 12,921
Author(s): Wolfgang Kabsch
Software Mentions: 3
Published: almost 15 years ago
10.1002/2211-5463.12387
Ligand complex structures of <scp>l</scp> ‐amino acid oxidase/monooxygenase from <i>Pseudomonas</i> sp. <scp>AIU</scp> 813 and its conformational change
Cited by: 11
Author(s): Dohyun Im, Daisuke Matsui, T. Arakawa, Kazuo Isobe, Yasuhisa Asano, Shinya Fushinobu
Software Mentions: 3
Published: almost 7 years ago
10.1002/2211-5463.12807
Structural and biophysical characterization of the type VII collagen vWFA2 subdomain leads to identification of two binding sites
Cited by: 1
Author(s): Jan Gebauer, Florian Flachsenberg, Cordula Windler, Barbara Richer, Ulrich Baumann, Karsten Seeger
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pntd.0006180
Inhibitors of Trypanosoma cruzi Sir2 related protein 1 as potential drugs against Chagas disease
Cited by: 9
Author(s): Luís Gaspar, Ross P.. Coron, Paul Kong Thoo Lin, David Costa, Begoña Pérez-Cabezas, Joana Tavares, Meritxell Roura-Ferrer, Isbaal Ramos, C. Ronin, Louise L. Major, Fabrice Ciesielski, Iain K. Pemberton, Jane MacDougall, Paola Ciapetti, Terry Smith, Anabela Cordeiro-da-Silva
Software Mentions: 3
Published: almost 7 years ago
10.1111/jth.12849
Coagulation factor XII protease domain crystal structure
Cited by: 48
Author(s): Monika Pathak, P.G. Wilmann, James Awford, C. Li, Badraldin Kareem Hamad, Peter M. Fischer, Ingrid Dreveny, Lodewijk V. Dekker, Jonas Emsley
Software Mentions: 2
Published: over 9 years ago
10.1111/febs.13828
Structure and biochemical properties of recombinant human dimethylglycine dehydrogenase and comparison to the disease‐related H109R variant
Cited by: 13
Author(s): Peter Augustín, Altijana Hromic, Tea Pavkov‐Keller, Karl Gruber, Peter Macheroux
Software Mentions: 2
Published: about 8 years ago
10.1111/febs.12308
The architecture of<i><scp>T</scp>rypanosoma brucei</i>tubulin‐binding cofactor <scp>B</scp>and implications for function
Cited by: 6
Author(s): Jennifer R. Fleming, Rachel Morgan, Paul K. Fyfe, Sharon M. Kelly, William N. Hunter
Software Mentions: 2
Published: over 11 years ago
10.1111/j.1742-4658.2011.08276.x
Structural characterization of angiotensin I‐converting enzyme in complex with a selenium analogue of captopril
Cited by: 30
Author(s): M. Akif, Geoffrey Masuyer, S.L.U. Schwager, Bhaskar J. Bhuyan, Govindasamy Mugesh, R. Elwyn Isaac, Edward D. Sturrock, K. Ravi Acharya
Software Mentions: 2
Published: about 13 years ago
10.1002/2211-5463.13159
Crystal structure of a novel homodimeric <scp>l</scp> ‐ribulose 3‐epimerase from <i>Methylomonus</i> sp.
Cited by: 5
Author(s): Hiromi Yoshida, Akihide Yoshihara, Shiro Kato, Susumu Mochizuki, Kazuya Akimitsu, Ken Izumori, Shigehiro Kamitori
Software Mentions: 2
Published: over 3 years ago
10.1002/2211-5463.12264
Anthranilate phosphoribosyltransferase from the hyperthermophilic archaeon<i>Thermococcus kodakarensis</i>shows maximum activity with zinc and forms a unique dimeric structure
Cited by: 9
Author(s): Sumera Perveen, Naeem Rashid, Xiaofeng Tang, Tadayuki Imanaka, Anastassios C. Papageorgiou
Software Mentions: 2
Published: over 7 years ago
10.1002/2211-5463.13222
Structural and functional characterization of a plant alpha‐actinin
Cited by: 1
Author(s): Karina Persson, Lars Backman
Software Mentions: 2
Published: over 3 years ago
10.1002/2211-5463.12132
The structure of Toho1 β‐lactamase in complex with penicillin reveals the role of Tyr105 in substrate recognition
Cited by: 11
Author(s): Patricia S. Langan, Venu Gopal Vandavasi, Kevin L. Weiss, J.B. Cooper, Stephan L. Ginell, Leighton Coates
Software Mentions: 2
Published: about 8 years ago
10.1002/2211-5463.12772
Crystal structure of the translation recovery factor Trf from <i>Sulfolobus solfataricus</i>
Cited by: 1
Author(s): Marco Kaiser, Jan Philip Wurm, Birgit Märtens, Udo Bläsi, Denys Pogoryelov, Jens Wöhnert
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.ppat.1003714
Structures of B-Lymphotropic Polyomavirus VP1 in Complex with Oligosaccharide Ligands
Cited by: 24
Author(s): Ursula Neu, Z.M. Khan, Benjamin Schuch, Angelina S. Palma, Yan Liu, Michael Pawlita, Ten Feizi, Thilo Stehle
Software Mentions: 1
Published: about 11 years ago
10.1002/2211-5463.12935
Structural insights into the enhanced carbapenemase efficiency of OXA‐655 compared to OXA‐10
Cited by: 7
Author(s): Hanna‐Kirsti S. Leiros, Ane Molden Thomassen, Ørjan Samuelsen, Carl-Fredrik Flach, Stathis D. Kotsakis, D. G. Joakim Larsson
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0193602
The crystal structure of the Leishmania infantum Silent Information Regulator 2 related protein 1: Implications to protein function and drug design
Cited by: 14
Author(s): C. Ronin, David Costa, Joana Tavares, Joana Faria, Fabrice Ciesielski, Paola Ciapetti, Terry Smith, Jane MacDougall, Anabela Cordeiro-da-Silva, Iain K. Pemberton
Software Mentions: 1
Published: over 6 years ago
10.1111/febs.14051
Catalytic competence, structure and stability of the cancer‐associated R139W variant of the human <scp>NAD</scp> (P)H:quinone oxidoreductase 1 ( <scp>NQO</scp> 1)
Cited by: 27
Author(s): Wolf Dieter Lienhart, Emilia Sofia Strandback, Venugopal Gudipati, Karin Koch, Alexandra Binter, M. Uhl, David M. Rantasa, Benjamin Bourgeois, Tobias Madl, Klaus Zangger, Karl Gruber, Peter Macheroux
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0119054
Molecular and Biochemical Analysis of Chalcone Synthase from Freesia hybrid in Flavonoid Biosynthetic Pathway
Cited by: 94
Author(s): Wei Sun, Xiangyu Meng, Lingjie Liang, Wangshu Jiang, Yafei Huang, Jie He, Haiyan Hu, Jonas Almqvist, Xiang Gao, Li Wang
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.ppat.1002738
Structures of Merkel Cell Polyomavirus VP1 Complexes Define a Sialic Acid Binding Site Required for Infection
Cited by: 81
Author(s): Ursula Neu, Holger Hengel, Bärbel S. Blaum, Rachel M. Schowalter, Dennis G. Macejak, Michel Gilbert, Warren W. Wakarchuk, Akira Imamura, Hiromune Ando, Makoto Kiso, Niklas Arnberg, Robert L. Garcea, Thomas Peters, Christopher B. Buck, Thilo Stehle
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.ppat.1003688
A Structure-Guided Mutation in the Major Capsid Protein Retargets BK Polyomavirus
Cited by: 66
Author(s): Ursula Neu, Stacy Ann A. Allen, Bärbel S. Blaum, Yan Liu, Martin Frank, Angelina S. Palma, L.J. Stroh, Ten Feizi, Thomas Peters, Walter J. Atwood, Thilo Stehle
Software Mentions: 1
Published: about 11 years ago