Ecosyste.ms: Papers

10.1371/journal.pone.0137132

Clustering of Expression Data in Chronic Lymphocytic Leukemia Reveals New Molecular Subdivisions
Cited by: 7
Author(s): Sally Yepes, María Mercedes Torres, Rafael Andrade
Software Mentions: 9
Published: about 9 years ago

10.1371/journal.pone.0152747

The Identification of Novel Diagnostic Marker Genes for the Detection of Beer Spoiling Pediococcus damnosus Strains Using the BlAst Diagnostic Gene findEr
Cited by: 32
Author(s): Jürgen Behr, Andreas Geißler, Jonas Schmid, Anja Zehe, Rudi F. Vogel
Software Mentions: 9
Published: over 8 years ago

10.1371/journal.pone.0069624

Transcriptomic Analysis of Insulin-Sensitive Tissues from Anti-Diabetic Drug Treated ZDF Rats, a T2DM Animal Model
Cited by: 4
Author(s): Yo Na Kim, Sangok Kim, Il Yong Kim, Jae Hoon Shin, Sooyoung Cho, Sun Shin Yi, Wankyu Kim, Kyung Sub Kim, Sanghyuk Lee, Je Kyung Seong
Software Mentions: 8
Published: over 11 years ago

10.1186/s12864-020-07111-x

Genome-wide patterns of differentiation within and among U.S. commercial honey bee stocks
Cited by: 19
Author(s): Perot Saelao, Michael Simone-Finstrom, Arián Avalos, Lelania Bilodeau, Robert G. Danka, Lilia de Guzman, Frank D. L. Rinkevich, Philip Tokarz
Software Mentions: 5
Published: about 4 years ago

10.1186/1471-2164-13-26

Postmortem cardiac tissue maintains gene expression profile even after late harvesting
Cited by: 35
Author(s): Saloni Gupta, Marc K. Halushka, Gina M. Hilton, Dan E. Arking
Software Mentions: 5
Published: almost 13 years ago

10.1002/1873-3468.13106

<scp>DDX</scp>3X <scp>RNA</scp> helicase affects breast cancer cell cycle progression by regulating expression of <scp>KLF</scp>4
Cited by: 26
Author(s): Ester Cannizzaro, Andrew J. Bannister, Namshik Han, Andrej Alendar, Tony Kouzarides
Software Mentions: 5
Published: over 6 years ago

10.3389/fonc.2020.573318

PHF20 Promotes Glioblastoma Cell Malignancies Through a WISP1/BGN-Dependent Pathway
Cited by: 6
Author(s): Qianquan Ma, Wenyong Long, Changsheng Xing, Chongming Jiang, Jun Su, Helen Y. Wang, Qing Liu, Rong Fu Wang
Software Mentions: 4
Published: about 4 years ago

10.1002/2211-5463.12976

Adipose‐derived mesenchymal stem cells differentiate into pancreatic cancer‐associated fibroblasts <i>in vitro</i>
Cited by: 29
Author(s): Yoshihiro Miyazaki, Tatsuya Oda, Nobuhito Mori, Yasuyuki S. Kida
Software Mentions: 3
Published: about 4 years ago

10.1186/s12866-020-01737-3

Complete genome sequencing and comparative genomic analyses of Bacillus sp. S3, a novel hyper Sb(III)-oxidizing bacterium
Cited by: 7
Author(s): Jiaokun Li, Tianyuan Gu, Liangzhi Li, Xueling Wu, Li Shen, Runlan Yu, Yuandong Liu, Guanzhou Qiu, Weimin Zeng
Software Mentions: 3
Published: over 4 years ago

10.1155/2016/8239817

The Classification of<i>Sini</i>Decoction Pattern in Traditional Chinese Medicine by Gene Expression Profiling
Cited by: 4
Author(s): Hung-Tsu Cheng, Chaang-Ray Chen, Chia-Yang Li, Chao-Ying Huang, Wun‐Yi Shu, Ian C. Hsu
Software Mentions: 2
Published: almost 9 years ago

10.3390/cells9020289

Urine microRNA Profiling Displays miR-125a Dysregulation in Children with Fragile X Syndrome
Cited by: 9
Author(s): Noora Putkonen, Asta Laiho, Douglas W. Ethell, Juha-Pekka Pursiheimo, Anna‐Kaisa Anttonen, Juho Pitkonen, Adriana‐Mariel Gentile, Yolanda de Diego-Otero, Maija Castrén
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2021.706683

Gut Microbiota Associated With Different Sea Lamprey (Petromyzon marinus) Life Stages
Cited by: 3
Author(s): Prince P. Mathai, Muruleedhara N. Byappanahalli, Nicholas S. Johnson, Michael J. Sadowsky
Software Mentions: 2
Published: about 3 years ago

10.3390/insects11020090

Transcriptome Profiling Revealed Potentially Critical Roles for Digestion and Defense-Related Genes in Insects’ Use of Resistant Host Plants: A Case Study with Sitobion Avenae
Cited by: 4
Author(s): Da Wang, Xiaoqin Shi, Deguang Liu, Yujing Yang, Zheming Shang
Software Mentions: 2
Published: almost 5 years ago

10.1080/23802359.2016.1186518

The complete mitochondrial genome of sponge Tethya sp. (Demospongiae, Tethyida, Tethyidae)
Cited by: 2
Author(s): Yuan Zhang, Dan Huang, Dexiang Wang, Shaoxiong Ding
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2021.694874

Label-Free Quantitative Proteomic Analysis of the Global Response to Indole-3-Acetic Acid in Newly Isolated Pseudomonas sp. Strain LY1
Cited by: 0
Author(s): Shuxue Zhao, Xi Chen, Qianshu Sun, Fei Wang, Chunhui Hu, Leilei Guo, Jie Bai, Hao Yu
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2021.707332

Genetic Features of Plasmid- and Chromosome-Mediated mcr-1 in Escherichia coli Isolates From Animal Organs With Lesions
Cited by: 7
Author(s): Zengyuan Liu, Yingqiu Liu, Wei Xi, Shuangshi Liu, Jia Liu, Haibo Mu, Beibei Chen, Hao He, Yunpeng Fan, Wuren Ma, Weimin Zhang, Mingzhe Fu, Juan Wang, Xiaoping Song
Software Mentions: 1
Published: over 3 years ago

10.1073/pnas.1902702116

A heuristic derived from analysis of the ion channel structural proteome permits the rapid identification of hydrophobic gates
Cited by: 50
Author(s): Shanlin Rao, Gianni Klesse, Phillip J. Stansfeld, Stephen J. Tucker, Mark S. P. Sansom
Software Mentions: 1
Published: over 5 years ago

10.3390/md17050273

Insights into Red Sea Brine Pool Specialized Metabolism Gene Clusters Encoding Potential Metabolites for Biotechnological Applications and Extremophile Survival
Cited by: 11
Author(s): Laila Ziko, Mustafa Adel, Mohamed N. Malash, Rania Siam
Software Mentions: 1
Published: over 5 years ago

10.1128/genomeA.00982-15

Genome Sequence of Bacillus alveayuensis Strain 24KAM51, a Halotolerant Thermophile Isolated from a Hydrothermal Vent
Cited by: 2
Author(s): Sevasti Filippidou, Tina Wunderlin, Thomas Junier, Nicole Jeanneret, Shannon L. Johnson, Kim McMurry, Cheryl D. Gleasner, Chien‐Chi Lo, Po-E Li, Momchilo Vuyisich, Patrick Chain, Pilar Junier
Software Mentions: 1
Published: about 9 years ago

10.1186/s12953-021-00176-w

Comparative proteomics analysis reveals differentially accumulated proteins associated with male and female A. chinensis var. chinensis bud development
Cited by: 0
Author(s): Yu Zhang, Yuexing Wang, Wanying Zhou, Shimao Zheng, Wenhui Zhang
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0060029

Multiple Interkingdom Horizontal Gene Transfers in Pyrenophora and Closely Related Species and Their Contributions to Phytopathogenic Lifestyles
Cited by: 30
Author(s): Bao‐Fa Sun, Jin‐Hua Xiao, Shunmin He, Li Liu, Robert W. Murphy, Dawei Huang
Software Mentions: 1
Published: over 11 years ago

10.1080/13880209.2021.1964542

Network pharmacology-based analysis in determining the mechanisms of Huoxin pill in protecting against myocardial infarction
Cited by: 4
Author(s): Jia He, Da Wo, Martin A. Eglitis, Qing Wang, Jingxiao Chen, Jun Peng, Weidong Zhu, Dan‐ni Ren
Software Mentions: 1
Published: almost 4 years ago