pypi: beagle | Projects | Ecosyste.ms: Papers

10.1371/journal.pgen.1009566

Drainage-structuring of ancestral variation and a common functional pathway shape limited genomic convergence in natural high- and low-predation guppies
Cited by: 19
Author(s): James R. Whiting, Josephine R. Paris, Mijke J. van der Zee, Paul J. Parsons, Detlef Weigel, Bonnie A. Fraser
Software Mentions: 7
Published: over 3 years ago

10.1111/age.12873

Genomic regions influencing intramuscular fat in divergently selected rabbit lines
Cited by: 15
Author(s): Bolívar Samuel Sosa-Madrid, Pilar Hernández, A. Blasco, Chris Haley, Luca Fontanesi, M. A. Santacreu, Ramona N. Pena, Pau Navarro, Noelia Ibáñez‐Escriche
Software Mentions: 6
Published: about 5 years ago

10.1111/tpj.14760

High‐density genetic variation maps reveal the correlation between asymmetric interspecific introgressions and improvement of agronomic traits in Upland and Pima cotton varieties developed in Xinjiang, China
Cited by: 20
Author(s): Xiaoqin Nie, Tianwang Wen, Panxia Shao, Binghui Tang, Nurimanguli Aini, Yu Yu, Xinying Du, Chunyuan You, Zhongxu Lin
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pgen.1009010

Candidate variants in TUB are associated with familial tremor
Cited by: 2
Author(s): M. Reza Sailani, Fereshteh Jahanbani, Charles W. Abbott, Hayan Lee, Amin Zia, Shannon Rego, Juliane Winkelmann, Franziska Hopfner, Tahir Naeem Khan, Nicholas Katsanis, Stefanie H. Müller, Daniela Berg, Katherine M. Lyman, Christian Mychajliw, G. Deuschl, Jonathan A. Bernstein, Gregor Kuhlenbäumer, M Snyder
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-021-85203-8

GWAS findings improved genomic prediction accuracy of lipid profile traits: Tehran Cardiometabolic Genetic Study
Cited by: 8
Author(s): Mahdi Akbarzadeh, Saeid Rasekhi Dehkordi, Mahmoud Amiri Roudbar, Mehdi Sargolzaei, Kamran Guity, Bahareh Sedaghati-Khayat, Parisa Riahi, Fereidoun Azizi, Maryam Sadat Daneshpour
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0050358

Past Climate Change and Plant Evolution in Western North America: A Case Study in Rosaceae
Cited by: 47
Author(s): Mats Töpel, Alexandre Antonelli, Chris Yesson, Bente Eriksen
Software Mentions: 4
Published: almost 12 years ago

10.1111/mec.13146

Heterogeneity of genetic architecture of body size traits in a free‐living population
Cited by: 69
Author(s): Camillo Bérénos, Philip A Ellis, Jill G. Pilkington, Sang Lee, Jacob Gratten, Josephine M. Pemberton
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-021-86389-7

Genome-wide association study and Mendelian randomization analysis provide insights for improving rice yield potential
Cited by: 7
Author(s): Jing Su, Kai Xu, Zirong Li, Yumei Hu, Zhongli Hu, Xianwei Zheng, Shufeng Song, Zhonghai Tang, Lanzhi Li
Software Mentions: 3
Published: over 3 years ago

10.1111/age.13068

A natural knockout of the <i>MYO7A</i> gene leads to pre‐weaning mortality in pigs
Cited by: 4
Author(s): Martijn F.L. Derks, Hendrik Jan Megens, W. L. Giacomini, M.A.M. Groenen, Marcos S. Lopes
Software Mentions: 3
Published: over 3 years ago

10.1111/age.12853

Accuracies of genomic prediction for twenty economically important traits in Chinese Simmental beef cattle
Cited by: 19
Author(s): Bo Zhu, Ping Guo, Z. Wang, W. Zhang, Y. Chen, Long Zhang, Huijiang Gao, Xue Gao, Lingyang Xu, J. Li
Software Mentions: 3
Published: about 5 years ago

10.1099/mgen.0.000057

Bayesian codon substitution modelling to identify sources of pathogen evolutionary rate variation
Cited by: 4
Author(s): Guy Baele, Marc A. Suchard, Filip Bielejec, Philippe Lemey
Software Mentions: 3
Published: over 8 years ago

10.1111/eva.12857

Twin introductions by independent invader mussel lineages are both associated with recent admixture with a native congener in Australia
Cited by: 36
Author(s): Iva Popovic, Ambrocio Melvin A. Matias, Nicolas Bierne, Cynthia Riginos
Software Mentions: 3
Published: about 5 years ago

10.1186/s13059-015-0837-4

Genomic legacy of the African cheetah, Acinonyx jubatus
Cited by: 159
Author(s): Pavel Dobrynin, Shi Ping Liu, Gaik Tamazian, Zijun Xiong, Andrey A. Yurchenko, Ksenia Krasheninnikova, Sergei Kliver, Anne Schmidt‐Küntzel, Klaus‐Peter Koepfli, Warren E. Johnson, Lukas F. K. Kuderna, Raquel García-Pérez, Marc de Manuel, Ricardo Godinez, Aleksey Komissarov, Alex Makunin, Vladimir Brukhin, Wei‐Lin Qiu, Long Zhang, Fang Li, Jine Yi, Carlos A. Driscoll, Agostinho Antunes, Tarás K. Oleksyk, Eduardo Eizirik, Polina L. Perelman, Melody E. Roelke, David E. Wildt, Mark Diekhans, Tomàs Marquès‐Bonet, Laurie Marker, Jong Bhak, Jun Wang, Guojie Zhang, Stephen J. O’Brien
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12864-020-6711-0

GWAS and co-expression network combination uncovers multigenes with close linkage effects on the oleic acid content accumulation in Brassica napus
Cited by: 12
Author(s): Yang Gi Min, Mei Guan, Zhenqian Zhang, Qiuping Zhang, Yixin Cui, Hao Chen, Wei Liu, Habib U. Jan, Kai P. Voss-Fels, Christian R. Werner, Xin He, Zhongsong Liu, Chunyun Guan, Rod J. Snowdon, Wei Hua, Lunwen Qian
Software Mentions: 2
Published: over 4 years ago

10.1186/s12859-017-1746-1

HLA-check: evaluating HLA data from SNP information
Cited by: 7
Author(s): M Jeanmougin, Josselin Noirel, Cédric Coulonges, Jean‐François Zagury
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2018.00921

Genome-Wide Association Study Reveals Both Overlapping and Independent Genetic Loci to Control Seed Weight and Silique Length in Brassica napus
Cited by: 29
Author(s): Hongli Dong, Chuandong Tan, Yuzhen Li, Yan He, Shuai Wei, Yixin Cui, Yangui Chen, Dongfeng Wei, Ying Fu, Ying He, Heng Wan, Lin Zhi, Qing Xiong, Kun Lu, Jiana Li, Wei Qian
Software Mentions: 2
Published: over 6 years ago

10.1016/j.ajhg.2017.06.013

Continuity and Admixture in the Last Five Millennia of Levantine History from Ancient Canaanite and Present-Day Lebanese Genome Sequences
Cited by: 87
Author(s): Marc Haber, Claude Doumet-Serhal, Christiana L. Scheib, Yali Xue, Petr Danecek, Massimo Mezzavilla, Sonia Youhanna, Rui Martiniano, Javier Prado-Martinez, Michał Szpak, Elizabeth Matisoo-Smith, Holger Schutkowski, Richard Mikulski, Pierre Zalloua, Toomas Kivisild, Chris Tyler‐Smith
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0040996

Constructing Endophenotypes of Complex Diseases Using Non-Negative Matrix Factorization and Adjusted Rand Index
Cited by: 8
Author(s): Huimin Wang, Ching‐Lin Hsiao, Ai-Ru Hsieh, Yi‐Hao Lin, Cathy S.J. Fann
Software Mentions: 2
Published: over 12 years ago

10.1111/age.12615

Exploiting whole genome sequence data to fine map and characterize candidate genes within a quantitative trait loci region affecting androstenone on porcine chromosome 5
Cited by: 5
Author(s): Maren van Son, Rahul Agarwal, Matthew Kent, Harald Grove, Eli Grindflek, Sigbjørn Lien
Software Mentions: 1
Published: about 7 years ago

10.1186/s12284-021-00468-x

OryzaGenome2.1: Database of Diverse Genotypes in Wild Oryza Species
Cited by: 14
Author(s): Hiromi Kajiya‐Kanegae, Hajime Ohyanagi, Toshinobu Ebata, Yasuhiro Tanizawa, Akio Onogi, Yuji Sawada, Masami Yokota Hirai, Zixuan Wang, Bin Han, Atsushi Toyoda, Asao Fujiyama, Hiroyoshi Iwata, Katsutoshi Tsuda, Toshiya Suzuki, Misuzu Nosaka-Takahashi, Ken‐Ichi Nonomura, Yasukazu Nakamura, Shoko Kawamoto, Nori Kurata, Yutaka Satō
Software Mentions: 1
Published: over 3 years ago

10.1186/1759-8753-4-7

Evolution of a transposon in Daphnia hybrid genomes
Cited by: 7
Author(s): Roland Vergilino, Tyler A. Elliott, Philippe Desjardins-Proulx, Teresa J. Crease
Software Mentions: 1
Published: almost 12 years ago

Ecosyste.ms: Papers

Projects: pypi: beagle

Papers Mentioning beagle 22