pypi: merge | Projects | Ecosyste.ms: Papers

10.1111/1755-0998.13060

Advancing the integration of multi‐marker metabarcoding data in dietary analysis of trophic generalists
Cited by: 60
Author(s): Luís P. da Silva, Vanessa A. Mata, Pedro Lopes, Paulo Pereira, Simon Jarman, Ricardo Lopes, Pedro Beja
Software Mentions: 6
Published: about 5 years ago

10.1186/1745-6150-6-51

Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data
Cited by: 12
Author(s): Iros Barozzi, Alberto Termanini, Saverio Minucci, Gioacchino Natoli
Software Mentions: 6
Published: almost 14 years ago

10.1371/journal.pgen.1007114

ciRS-7 exonic sequence is embedded in a long non-coding RNA locus
Cited by: 62
Author(s): Steven P. Barrett, Kevin R. Parker, Caroline Horn, Miguel A. Mata, Julia Salzman
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12864-020-06793-7

Coding and long non-coding RNAs provide evidence of distinct transcriptional reprogramming for two ecotypes of the extremophile plant Eutrema salsugineum undergoing water deficit stress
Cited by: 8
Author(s): Caitlin M. A. Simopoulos, Mitchell MacLeod, Solmaz Irani, Wilson W L Sung, Marc J. Champigny, Peter S. Summers, G. Brian Golding, Elizabeth A. Weretilnyk
Software Mentions: 4
Published: over 4 years ago

10.1093/scan/nsaa141

HyPyP: a Hyperscanning Python Pipeline for inter-brain connectivity analysis
Cited by: 38
Author(s): Anaël Ayrolles, Florence Brun, Yi‐Ping Phoebe Chen, Amir Djalovski, Yann Beauxis, Richard Delorme, Thomas Bourgeron, Suzanne Dikker, Guillaume Dumas
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0218719

Transcriptome variation in response to gastrointestinal nematode infection in goats
Cited by: 6
Author(s): Hadeer M. Aboshady, Nathalie Mandonnet, M. J. Stear, Rémy Arquet, Malia Bederina, Julien Sarry, Gwenola Tosser‐Klopp, Christophe Klopp, Anna M. Johansson, Elisabeth Jonas, Jean-Christophe Bambou
Software Mentions: 3
Published: over 5 years ago

10.1186/2193-1801-2-204

A bibliometric analysis of global forest ecology research during 2002–2011
Cited by: 30
Author(s): Yajun Song, Tianzhong Zhao
Software Mentions: 3
Published: over 11 years ago

10.1186/s13071-020-04035-z

Dafachronic acid and temperature regulate canonical dauer pathways during Nippostrongylus brasiliensis infectious larvae activation
Cited by: 10
Author(s): Katherine Omueti Ayoade, Faith R. Carranza, Woong Hee Cho, Zhu Wang, Steven A. Kliewer, David J. Mangelsdorf, Jonathan D. C. Stoltzfus
Software Mentions: 3
Published: over 4 years ago

10.1186/1471-2164-13-726

Development of high-throughput SNP-based genotyping in Acacia auriculiformis x A. mangium hybrids using short-read transcriptome data
Cited by: 13
Author(s): Melissa M L Wong, Charles H. Cannon, R Wickneswari V Ratnam
Software Mentions: 3
Published: almost 12 years ago

10.1186/s13059-021-02490-0

STAT: a fast, scalable, MinHash-based k-mer tool to assess Sequence Read Archive next-generation sequence submissions
Cited by: 35
Author(s): Kenneth S. Katz, Oleg Shutov, Richard T. Lapoint, Michael Kimelman, J. Rodney Brister, Christopher D. O’Sullivan
Software Mentions: 3
Published: about 3 years ago

10.3390/microorganisms8121947

Comparative Genomics of Xanthomonas citri pv. citri A* Pathotype Reveals Three Distinct Clades with Varying Plasmid Distribution
Cited by: 3
Author(s): J Webster, Daniel R. Bogema, Toni A. Chapman
Software Mentions: 2
Published: almost 4 years ago

10.7717/peerj.4806

Finding novel relationships with integrated gene-gene association network analysis of Synechocystis sp. PCC 6803 using species-independent text-mining
Cited by: 3
Author(s): Sanna M Kreula, Suwisa Kaewphan, Filip Ginter, Patrik R. Jones
Software Mentions: 2
Published: over 6 years ago

10.1038/s41396-020-00834-5

Marine Dadabacteria exhibit genome streamlining and phototrophy-driven niche partitioning
Cited by: 28
Author(s): Elaina D. Graham, Benjamin J. Tully
Software Mentions: 2
Published: almost 4 years ago

10.18632/oncotarget.13881

Integrated analyses for genetic markers of polycystic ovary syndrome with 9 case-control studies of gene expression profiles
Cited by: 5
Author(s): Chenqi Lu, Xiaoqin Liu, Lin Wang, Ning Jiang, Jun Yu, Xiaobo Zhao, Hairong Hu, S. Lilly Zheng, Xuelian Li, Guiying Wang
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0163002

Commercial Plant Production and Consumption Still Follow the Latitudinal Gradient in Species Diversity despite Economic Globalization
Cited by: 6
Author(s): Erik Nelson, Matthew R. Helmus, Jeannine Cavender‐Bares, Stephen Polasky, Jesse R. Lasky, Amy E. Zanne, William D. Pearse, Nathan J. B. Kraft, Daniela A. Miteva, William F. Fagan
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pgen.1007858

Comprehensive structural variation genome map of individuals carrying complex chromosomal rearrangements
Cited by: 34
Author(s): Jesper Eisfeldt, Maria Pettersson, Francesco Vezzi, Josephine Wincent, Max Käller, Joel Gruselius, Daniel Nilsson, Elisabeth Syk Lundberg, Claudia M.B. Carvalho, Anna Wedell
Software Mentions: 1
Published: over 5 years ago

10.1107/S2059798319012877

SAD phasing of XFEL data depends critically on the error model
Cited by: 12
Author(s): Aaron S. Brewster, Asmit Bhowmick, Robert Bolotovsky, Derek Mendez, Petrus H. Zwart, Nicholas K. Sauter
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0066001

Human-Derived Physiological Heat Shock Protein 27 Complex Protects Brain after Focal Cerebral Ischemia in Mice
Cited by: 24
Author(s): Shinichiro Teramoto, Hideki Shimura, Ryota Tanaka, Yoshiaki Shimada, Nobukazu Miyamoto, Hajime Arai, Takao Urabe, Nobutaka Hattori
Software Mentions: 1
Published: over 11 years ago

10.1186/s13059-020-1937-3

Purifying selection of long dsRNA is the first line of defense against false activation of innate immunity
Cited by: 25
Author(s): Michal Barák, Hagit T. Porath, Gilad Finkelstein, Binyamin A. Knisbacher, Ilana Buchumenski, Shalom Hillel Roth, Erez Y. Levanon, Eli Eisenberg
Software Mentions: 1
Published: over 4 years ago

10.3390/jcm9020315

Increased Cancer Incidence Following up to 15 Years after Cardiac Catheterization in Infants under One Year between 1980 and 1998—A Single Center Observational Study
Cited by: 7
Author(s): Heiko Stern, Michael Seidenbusch, Alexander Hapfelmeier, Christian Meierhofer, Susanne Naumann, Irene Schmid, Claudia Spix, Peter Ewert
Software Mentions: 1
Published: almost 5 years ago

10.1038/srep10212

Monitoring Brain Activity with Protein Voltage and Calcium Sensors
Cited by: 58
Author(s): Douglas A. Storace, Oliver Braubach, Jin Liu, Lawrence B. Cohen, Uhna Sung
Software Mentions: 1
Published: over 9 years ago

10.1038/srep26511

Engineering the Campylobacter jejuni N-glycan to create an effective chicken vaccine
Cited by: 69
Author(s): Harald Nothaft, Brandi Davis, Yee Ying Lock, María Elisa Pérez-Muñoz, Evgeny Vinogradov, Jens Walter, Colin Coros, Christine M. Szymanski
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-28839-3

Dietary non-fermentable fiber prevents autoimmune neurological disease by changing gut metabolic and immune status
Cited by: 60
Author(s): Kerstin Berer, Inés Martínez, Alesia Walker, Birgit Kunkel, Philippe Schmitt‐Kopplin, Jens Walter, Gurumoorthy Krishnamoorthy
Software Mentions: 1
Published: over 6 years ago

Ecosyste.ms: Papers

Projects: pypi: merge

Papers Mentioning merge 23