Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1745-6150-6-51

https://doi.org/10.1186/1745-6150-6-51

Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data

Cited by: 12
Author(s): Iros Barozzi, Alberto Termanini, Saverio Minucci, Gioacchino Natoli
Published: almost 14 years ago

Software Mentions 6

bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Papers that mentioned: 145
cran: sra
Selection Response Analysis
Papers that mentioned: 14
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: merge
A simple function of merge-sort
Papers that mentioned: 23
pypi: sra
A simple deploy tool
Papers that mentioned: 14